Wall clock time and date at job start Mon Mar 30 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.46768 * 2 1 4 4 C 1.54385 * 110.40976 * 237.58643 * 2 1 3 5 5 C 1.54265 * 105.05869 * 217.37206 * 4 2 1 6 6 H 1.09000 * 110.40853 * 118.94262 * 5 4 2 7 7 N 1.46902 * 110.31861 * 241.10060 * 5 4 2 8 8 C 1.46902 * 110.99815 * 202.08913 * 7 5 4 9 9 C 1.52998 * 109.47115 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.47296 * 305.00295 * 9 8 7 11 11 C 1.47202 * 109.47037 * 65.00230 * 9 8 7 12 12 N 6.33948 * 170.00568 * 298.55340 * 2 1 3 13 13 C 1.53001 * 109.47278 * 185.00124 * 9 8 7 14 14 C 1.50695 * 109.47075 * 174.99903 * 13 9 8 15 15 H 1.08000 * 120.00145 * 0.02562 * 14 13 9 16 16 C 1.37879 * 119.99811 * 179.97438 * 14 13 9 17 17 N 1.31513 * 120.00220 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99793 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47087 * 90.00911 * 18 16 14 20 20 H 1.48504 * 109.47126 * 210.00242 * 18 16 14 21 21 H 1.48501 * 109.47247 * 330.00189 * 18 16 14 22 22 C 1.54375 * 105.06080 * 359.97438 * 5 4 2 23 23 N 1.48558 * 104.59753 * 23.85801 * 22 5 4 24 24 C 1.46899 * 111.00307 * 200.95822 * 23 22 5 25 25 C 1.53002 * 117.49731 * 356.83122 * 24 23 22 26 26 C 1.52996 * 59.99869 * 252.51073 * 25 24 23 27 27 H 1.08998 * 109.46563 * 297.58421 * 1 2 3 28 28 H 1.08997 * 109.46747 * 57.58309 * 1 2 3 29 29 H 1.09002 * 109.47078 * 177.58886 * 1 2 3 30 30 H 1.09000 * 110.32161 * 98.47339 * 4 2 1 31 31 H 1.08998 * 110.32269 * 336.26318 * 4 2 1 32 32 H 1.00907 * 110.99894 * 78.14358 * 7 5 4 33 33 H 1.08996 * 109.46766 * 60.00650 * 8 7 5 34 34 H 1.08999 * 109.47514 * 300.00515 * 8 7 5 35 35 H 1.08996 * 109.47111 * 294.99936 * 13 9 8 36 36 H 1.08995 * 109.46838 * 55.00169 * 13 9 8 37 37 H 0.96996 * 119.99856 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.40958 * 142.63506 * 22 5 4 39 39 H 1.08995 * 110.41413 * 265.07504 * 22 5 4 40 40 H 1.08994 * 115.55170 * 142.53720 * 24 23 22 41 41 H 1.09004 * 117.49447 * 0.02562 * 25 24 23 42 42 H 1.08997 * 117.50013 * 145.02158 * 25 24 23 43 43 H 1.08999 * 117.49865 * 252.50611 * 26 25 24 44 44 H 1.09010 * 117.49905 * 107.49207 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2215 5 6 3.3177 -1.5190 -0.7054 6 1 3.1878 -2.5965 -0.8067 7 7 4.5123 -1.0789 -1.4384 8 6 5.5780 -2.0870 -1.3618 9 6 6.8030 -1.5938 -2.1345 10 1 6.5128 -1.3448 -3.1553 11 6 7.3506 -0.3975 -1.4744 12 7 7.7733 0.5259 -0.9664 13 6 7.8664 -2.6936 -2.1606 14 6 9.0212 -2.2554 -3.0238 15 1 8.9992 -1.2889 -3.5054 16 6 10.1065 -3.0878 -3.1981 17 7 10.1335 -4.2645 -2.6113 18 14 11.5383 -2.5443 -4.2675 19 1 12.5361 -1.8285 -3.4325 20 1 12.1740 -3.7352 -4.8864 21 1 11.0432 -1.6372 -5.3340 22 6 3.4294 -1.1295 0.7842 23 7 2.0486 -0.7456 1.1754 24 6 2.0577 0.1024 2.3749 25 6 3.4097 0.3743 3.0375 26 6 2.4039 -0.5634 3.7081 27 1 -0.3632 0.4759 0.9109 28 1 -0.3633 0.5509 -0.8675 29 1 -0.3633 -1.0268 -0.0432 30 1 2.3416 -0.0841 -2.0186 31 1 1.3235 -1.4880 -1.5759 32 1 4.8353 -0.1848 -1.0998 33 1 5.2256 -3.0220 -1.7973 34 1 5.8487 -2.2512 -0.3188 35 1 8.2208 -2.8804 -1.1469 36 1 7.4341 -3.6073 -2.5685 37 1 10.8968 -4.8502 -2.7342 38 1 3.7693 -1.9801 1.3751 39 1 4.1078 -0.2852 0.9066 40 1 1.3194 0.9041 2.3894 41 1 4.2924 -0.0757 2.5831 42 1 3.5611 1.3552 3.4881 43 1 1.8937 -0.1995 4.5999 44 1 2.6249 -1.6308 3.6953 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572751932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:29 Heat of formation + Delta-G solvation = 50.162769 kcal Electronic energy + Delta-G solvation = -21410.108712 eV Core-core repulsion = 18362.791437 eV Total energy + Delta-G solvation = -3047.317275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.07479 -37.49417 -36.30175 -34.69167 -33.50397 -31.79353 -30.66261 -29.01309 -26.21978 -25.63995 -23.07132 -22.71545 -22.08069 -21.73797 -20.30917 -19.92266 -16.95802 -16.75167 -16.57911 -15.75249 -15.40731 -15.05038 -14.69076 -14.37605 -14.01257 -13.36885 -13.23468 -13.04256 -12.89622 -12.79680 -12.26930 -12.18396 -12.10787 -11.96273 -11.82461 -11.72477 -11.34544 -11.28033 -11.07277 -11.03599 -10.81419 -10.75364 -10.72198 -10.52483 -10.40902 -10.28119 -9.55809 -9.24214 -8.58986 -8.46683 -8.30546 -6.10714 -4.13938 3.29047 3.35703 3.38620 3.39831 3.53551 3.59145 3.82373 4.17808 4.39240 4.45401 4.51012 4.66772 4.76467 4.76886 4.89368 4.94664 5.06742 5.19164 5.26945 5.27356 5.37552 5.45691 5.50431 5.58537 5.63043 5.65797 5.71238 5.75048 5.79879 5.91892 5.94600 6.00470 6.09583 6.14148 6.33765 6.51883 6.61538 6.84165 7.10833 7.36957 7.42560 7.51305 7.84224 8.21740 8.36553 8.90594 9.51625 11.00154 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027885 B = 0.003338 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.889665 B = 8385.998758 C = 8712.751073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 H 0.052 0.948 4 C -0.111 4.111 5 C 0.084 3.916 6 H 0.092 0.908 7 N -0.682 5.682 8 C 0.066 3.934 9 C 0.006 3.994 10 H 0.111 0.889 11 C 0.241 3.759 12 N -0.477 5.477 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.002 4.002 23 N -0.472 5.472 24 C 0.008 3.992 25 C -0.217 4.217 26 C -0.166 4.166 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.337 0.663 33 H 0.093 0.907 34 H 0.035 0.965 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.711 5.407 7.141 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.052 4.052 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.027 4.027 6 H 0.111 0.889 7 N -0.312 5.312 8 C -0.064 4.064 9 C -0.016 4.016 10 H 0.129 0.871 11 C -0.075 4.075 12 N -0.154 5.154 13 C -0.006 4.006 14 C -0.565 4.565 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.132 4.132 23 N -0.195 5.195 24 C -0.101 4.101 25 C -0.255 4.255 26 C -0.204 4.204 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.537 5.949 7.417 21.727 hybrid contribution 1.702 0.723 0.184 1.859 sum -17.834 6.671 7.601 20.502 Atomic orbital electron populations 1.21706 0.93747 1.02500 1.01245 1.22702 0.96050 0.96113 0.90364 0.92962 1.22450 0.96338 0.99440 0.96736 1.22332 0.90830 1.00374 0.89174 0.88941 1.60781 1.06201 1.05888 1.58364 1.22130 0.89799 0.95610 0.98819 1.19348 0.94957 0.89100 0.98200 0.87101 1.29324 0.92031 0.93649 0.92545 1.81014 1.10266 1.13063 1.11073 1.19159 0.91415 0.91680 0.98348 1.21142 1.02658 1.02699 1.29996 0.92518 1.24953 0.98369 0.94848 0.95796 1.69935 1.30813 1.08865 1.43385 0.86593 0.82570 0.78203 0.80721 1.20701 1.21067 1.19701 1.24110 0.90379 1.00640 0.98063 1.65247 1.17558 1.34877 1.01783 1.22784 0.98278 0.98443 0.90638 1.23541 0.94811 1.01515 1.05674 1.22997 1.02728 0.99200 0.95459 0.92979 0.92230 0.91735 0.89921 0.90530 0.84401 0.88876 0.94692 0.95785 0.94159 0.92783 0.90094 0.92719 0.86900 0.87994 0.88869 0.88687 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.37 37.16 0.35 -0.72 16 2 C 0.06 0.53 2.81 -66.08 -0.19 0.34 16 3 H 0.05 0.52 7.99 -51.93 -0.42 0.11 16 4 C -0.11 -1.09 6.34 -25.34 -0.16 -1.25 16 5 C 0.08 0.93 3.37 -66.33 -0.22 0.70 16 6 H 0.09 1.02 7.86 -51.93 -0.41 0.61 16 7 N -0.68 -8.67 6.20 -105.27 -0.65 -9.32 16 8 C 0.07 0.95 4.96 -3.82 -0.02 0.93 16 9 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 10 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 11 C 0.24 4.81 12.97 -20.78 -0.27 4.54 16 12 N -0.48 -10.28 18.53 42.13 0.78 -9.49 16 13 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 14 C -0.53 -13.97 8.60 -34.44 -0.30 -14.27 16 15 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.00 -0.03 4.84 -2.19 -0.01 -0.04 16 23 N -0.47 -4.91 5.27 -214.26 -1.13 -6.04 16 24 C 0.01 0.08 5.83 -67.71 -0.39 -0.31 16 25 C -0.22 -2.14 9.35 -26.73 -0.25 -2.39 16 26 C -0.17 -1.52 10.36 -26.74 -0.28 -1.80 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 31 H 0.08 0.70 7.82 -51.93 -0.41 0.29 16 32 H 0.34 4.55 7.23 -39.29 -0.28 4.26 16 33 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 34 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.66 5.61 -51.93 -0.29 0.37 16 40 H 0.11 0.99 7.59 -51.93 -0.39 0.60 16 41 H 0.10 1.13 5.80 -51.93 -0.30 0.83 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.95 8.14 -51.92 -0.42 0.52 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -28.75 356.07 -9.59 -38.34 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.49 Total: 1.75 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.19 Total: -12.14 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.26 Total: -49.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.75 -9.59 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572751932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.507 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds