Wall clock time and date at job start Mon Mar 30 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.46768 * 2 1 4 4 C 1.54385 * 110.40976 * 237.58643 * 2 1 3 5 5 C 1.54265 * 105.05869 * 217.37206 * 4 2 1 6 6 H 1.09000 * 110.40853 * 118.94262 * 5 4 2 7 7 N 1.46902 * 110.31861 * 241.10060 * 5 4 2 8 8 C 1.46902 * 110.99815 * 202.08913 * 7 5 4 9 9 C 1.52998 * 109.47115 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.47296 * 305.00295 * 9 8 7 11 11 C 1.47202 * 109.47037 * 65.00230 * 9 8 7 12 12 N 6.33948 * 170.00568 * 298.55340 * 2 1 3 13 13 C 1.53001 * 109.47278 * 185.00124 * 9 8 7 14 14 C 1.50695 * 109.47075 * 174.99903 * 13 9 8 15 15 H 1.08000 * 120.00145 * 0.02562 * 14 13 9 16 16 C 1.37879 * 119.99811 * 179.97438 * 14 13 9 17 17 N 1.31513 * 120.00220 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99793 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47087 * 90.00911 * 18 16 14 20 20 H 1.48504 * 109.47126 * 210.00242 * 18 16 14 21 21 H 1.48501 * 109.47247 * 330.00189 * 18 16 14 22 22 C 1.54375 * 105.06080 * 359.97438 * 5 4 2 23 23 N 1.48558 * 104.59753 * 23.85801 * 22 5 4 24 24 C 1.46899 * 111.00307 * 200.95822 * 23 22 5 25 25 C 1.53002 * 117.49731 * 356.83122 * 24 23 22 26 26 C 1.52996 * 59.99869 * 252.51073 * 25 24 23 27 27 H 1.08998 * 109.46563 * 297.58421 * 1 2 3 28 28 H 1.08997 * 109.46747 * 57.58309 * 1 2 3 29 29 H 1.09002 * 109.47078 * 177.58886 * 1 2 3 30 30 H 1.09000 * 110.32161 * 98.47339 * 4 2 1 31 31 H 1.08998 * 110.32269 * 336.26318 * 4 2 1 32 32 H 1.00907 * 110.99894 * 78.14358 * 7 5 4 33 33 H 1.08996 * 109.46766 * 60.00650 * 8 7 5 34 34 H 1.08999 * 109.47514 * 300.00515 * 8 7 5 35 35 H 1.08996 * 109.47111 * 294.99936 * 13 9 8 36 36 H 1.08995 * 109.46838 * 55.00169 * 13 9 8 37 37 H 0.96996 * 119.99856 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.40958 * 142.63506 * 22 5 4 39 39 H 1.08995 * 110.41413 * 265.07504 * 22 5 4 40 40 H 1.08994 * 115.55170 * 142.53720 * 24 23 22 41 41 H 1.09004 * 117.49447 * 0.02562 * 25 24 23 42 42 H 1.08997 * 117.50013 * 145.02158 * 25 24 23 43 43 H 1.08999 * 117.49865 * 252.50611 * 26 25 24 44 44 H 1.09010 * 117.49905 * 107.49207 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2215 5 6 3.3177 -1.5190 -0.7054 6 1 3.1878 -2.5965 -0.8067 7 7 4.5123 -1.0789 -1.4384 8 6 5.5780 -2.0870 -1.3618 9 6 6.8030 -1.5938 -2.1345 10 1 6.5128 -1.3448 -3.1553 11 6 7.3506 -0.3975 -1.4744 12 7 7.7733 0.5259 -0.9664 13 6 7.8664 -2.6936 -2.1606 14 6 9.0212 -2.2554 -3.0238 15 1 8.9992 -1.2889 -3.5054 16 6 10.1065 -3.0878 -3.1981 17 7 10.1335 -4.2645 -2.6113 18 14 11.5383 -2.5443 -4.2675 19 1 12.5361 -1.8285 -3.4325 20 1 12.1740 -3.7352 -4.8864 21 1 11.0432 -1.6372 -5.3340 22 6 3.4294 -1.1295 0.7842 23 7 2.0486 -0.7456 1.1754 24 6 2.0577 0.1024 2.3749 25 6 3.4097 0.3743 3.0375 26 6 2.4039 -0.5634 3.7081 27 1 -0.3632 0.4759 0.9109 28 1 -0.3633 0.5509 -0.8675 29 1 -0.3633 -1.0268 -0.0432 30 1 2.3416 -0.0841 -2.0186 31 1 1.3235 -1.4880 -1.5759 32 1 4.8353 -0.1848 -1.0998 33 1 5.2256 -3.0220 -1.7973 34 1 5.8487 -2.2512 -0.3188 35 1 8.2208 -2.8804 -1.1469 36 1 7.4341 -3.6073 -2.5685 37 1 10.8968 -4.8502 -2.7342 38 1 3.7693 -1.9801 1.3751 39 1 4.1078 -0.2852 0.9066 40 1 1.3194 0.9041 2.3894 41 1 4.2924 -0.0757 2.5831 42 1 3.5611 1.3552 3.4881 43 1 1.8937 -0.1995 4.5999 44 1 2.6249 -1.6308 3.6953 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572751932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:29 Heat of formation + Delta-G solvation = 32.638751 kcal Electronic energy + Delta-G solvation = -21410.868611 eV Core-core repulsion = 18362.791437 eV Total energy + Delta-G solvation = -3048.077174 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.90921 -38.82246 -37.36009 -35.99975 -35.20995 -33.36093 -31.50420 -30.17084 -27.81576 -26.47372 -24.48094 -23.63304 -23.48421 -22.77825 -21.15336 -20.71729 -18.58104 -18.23474 -17.77100 -16.93591 -16.51213 -16.18961 -15.98429 -15.35335 -15.20041 -14.66544 -14.58263 -14.25451 -14.07394 -13.95087 -13.69953 -13.58259 -13.28113 -13.06247 -12.82405 -12.80407 -12.59537 -12.53236 -12.48473 -12.34044 -12.22102 -12.00002 -11.82123 -11.61666 -11.49774 -11.38244 -11.19121 -11.08507 -10.56062 -9.51445 -9.24308 -8.19972 -6.28217 1.39684 1.41760 1.51123 1.92130 1.94347 2.40964 2.61011 3.01847 3.15044 3.21321 3.23653 3.60548 3.68843 3.91107 4.00987 4.02610 4.14044 4.20898 4.27533 4.39234 4.42970 4.49422 4.62699 4.68447 4.71434 4.81015 4.87389 4.90901 4.94279 4.98097 5.02761 5.06351 5.15975 5.20300 5.28309 5.41713 5.46909 5.61858 5.75762 5.79164 6.05225 6.08335 6.21064 6.28593 6.73195 6.86672 7.40400 8.90924 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027885 B = 0.003338 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.889665 B = 8385.998758 C = 8712.751073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 H 0.047 0.953 4 C -0.106 4.106 5 C 0.084 3.916 6 H 0.096 0.904 7 N -0.677 5.677 8 C 0.078 3.922 9 C 0.019 3.981 10 H 0.124 0.876 11 C 0.251 3.749 12 N -0.505 5.505 13 C 0.038 3.962 14 C -0.539 4.539 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.923 5.923 18 Si 0.948 3.052 19 H -0.284 1.284 20 H -0.278 1.278 21 H -0.264 1.264 22 C 0.003 3.997 23 N -0.477 5.477 24 C 0.005 3.995 25 C -0.224 4.224 26 C -0.160 4.160 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.333 0.667 33 H 0.107 0.893 34 H 0.031 0.969 35 H -0.001 1.001 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.134 5.916 6.702 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.052 4.052 3 H 0.065 0.935 4 C -0.144 4.144 5 C -0.027 4.027 6 H 0.114 0.886 7 N -0.307 5.307 8 C -0.052 4.052 9 C -0.003 4.003 10 H 0.142 0.858 11 C -0.065 4.065 12 N -0.182 5.182 13 C 0.000 4.000 14 C -0.577 4.577 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.774 3.226 19 H -0.211 1.211 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.127 4.127 23 N -0.199 5.199 24 C -0.105 4.105 25 C -0.262 4.262 26 C -0.198 4.198 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.049 0.951 35 H 0.018 0.982 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.143 0.857 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.977 6.465 6.974 23.032 hybrid contribution 2.128 0.569 0.351 2.230 sum -18.849 7.034 7.326 21.411 Atomic orbital electron populations 1.21671 0.92334 1.02633 1.02024 1.22749 0.97107 0.95579 0.89771 0.93516 1.22424 0.95767 0.99482 0.96765 1.22387 0.90515 1.00770 0.88977 0.88583 1.60785 1.06009 1.05189 1.58752 1.21973 0.88849 0.96362 0.98054 1.19247 0.94840 0.86795 0.99450 0.85810 1.29666 0.91346 0.93604 0.91884 1.81014 1.11018 1.14080 1.12133 1.18982 0.91837 0.93118 0.96099 1.21559 1.03774 1.02432 1.29981 0.92772 1.25714 1.00903 0.95036 0.97129 1.70029 1.31653 1.09847 1.44782 0.85702 0.79596 0.78039 0.79306 1.21053 1.20355 1.18790 1.23991 0.90766 0.99896 0.98044 1.65274 1.16798 1.35464 1.02398 1.22912 0.98272 0.98769 0.90548 1.23508 0.94427 1.02045 1.06266 1.23046 1.02177 0.98635 0.95941 0.92650 0.90997 0.91921 0.90094 0.89474 0.84874 0.87435 0.95085 0.98234 0.94444 0.92708 0.90859 0.93923 0.85692 0.89648 0.88121 0.86934 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.37 71.98 0.67 -1.09 16 2 C 0.06 0.96 2.81 45.07 0.13 1.09 16 3 H 0.05 0.87 7.99 -2.39 -0.02 0.85 16 4 C -0.11 -1.88 6.34 31.49 0.20 -1.68 16 5 C 0.08 1.74 3.37 45.81 0.15 1.90 16 6 H 0.10 1.95 7.86 -2.39 -0.02 1.94 16 7 N -0.68 -16.37 6.20 -486.95 -3.02 -19.39 16 8 C 0.08 2.15 4.96 86.30 0.43 2.58 16 9 C 0.02 0.65 2.42 -12.60 -0.03 0.62 16 10 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 11 C 0.25 9.92 12.97 89.45 1.16 11.08 16 12 N -0.50 -21.67 18.53 20.00 0.37 -21.30 16 13 C 0.04 1.76 4.42 29.85 0.13 1.90 16 14 C -0.54 -28.52 8.60 25.60 0.22 -28.30 16 15 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 16 C 0.01 0.61 5.46 84.66 0.46 1.07 16 17 N -0.92 -53.02 13.29 21.45 0.28 -52.73 16 18 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 C 0.00 0.06 4.84 86.45 0.42 0.48 16 23 N -0.48 -9.35 5.27 -831.79 -4.38 -13.73 16 24 C 0.00 0.08 5.83 44.92 0.26 0.35 16 25 C -0.22 -4.31 9.35 30.59 0.29 -4.02 16 26 C -0.16 -2.76 10.36 30.59 0.32 -2.44 16 27 H 0.05 0.72 7.66 -2.39 -0.02 0.71 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 30 H 0.08 1.49 7.95 -2.39 -0.02 1.47 16 31 H 0.09 1.38 7.82 -2.39 -0.02 1.36 16 32 H 0.33 8.69 7.23 -89.69 -0.65 8.05 16 33 H 0.11 2.71 8.07 -2.39 -0.02 2.69 16 34 H 0.03 0.89 8.11 -2.39 -0.02 0.87 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.03 5.61 -2.39 -0.01 1.02 16 40 H 0.13 1.96 7.59 -2.39 -0.02 1.94 16 41 H 0.09 1.94 5.80 -2.39 -0.01 1.92 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -60.31 356.07 0.42 -59.89 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.33 Total: 18.27 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.81 Total: -16.46 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -6.75 Total: -107.15 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -60.31 0.42 -59.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572751932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.531 kcal (2) G-P(sol) polarization free energy of solvation -60.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds