Wall clock time and date at job start Mon Mar 30 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.72817 * 2 1 4 4 C 1.54941 * 110.66883 * 236.90428 * 2 1 3 5 5 C 1.54591 * 102.92320 * 204.15008 * 4 2 1 6 6 H 1.09002 * 110.39300 * 262.99876 * 5 4 2 7 7 N 1.46894 * 110.30821 * 140.87164 * 5 4 2 8 8 C 1.46905 * 111.00148 * 157.83291 * 7 5 4 9 9 C 1.52999 * 109.47061 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.47270 * 304.99586 * 9 8 7 11 11 C 1.47199 * 109.47604 * 64.99713 * 9 8 7 12 12 N 6.91377 * 117.14128 * 222.67058 * 2 1 3 13 13 C 1.53004 * 109.46745 * 184.99943 * 9 8 7 14 14 C 1.50705 * 109.46900 * 175.00020 * 13 9 8 15 15 H 1.07995 * 120.00053 * 359.97438 * 14 13 9 16 16 C 1.37882 * 119.99811 * 179.97438 * 14 13 9 17 17 N 1.31515 * 119.99711 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99956 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46938 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46952 * 120.00177 * 18 16 14 21 21 H 1.48503 * 109.47198 * 240.00386 * 18 16 14 22 22 C 1.53997 * 105.13862 * 21.95584 * 5 4 2 23 23 N 1.47898 * 107.05794 * 1.22553 * 22 5 4 24 24 C 1.46906 * 110.99718 * 214.15522 * 23 22 5 25 25 C 1.52998 * 117.49903 * 128.50020 * 24 23 22 26 26 C 1.52991 * 117.49945 * 59.87556 * 24 23 22 27 27 H 1.09003 * 109.46435 * 296.90256 * 1 2 3 28 28 H 1.08998 * 109.46888 * 56.90439 * 1 2 3 29 29 H 1.08993 * 109.46885 * 176.90630 * 1 2 3 30 30 H 1.08997 * 110.72523 * 85.78892 * 4 2 1 31 31 H 1.09001 * 110.71619 * 322.51002 * 4 2 1 32 32 H 1.00899 * 111.00323 * 33.87336 * 7 5 4 33 33 H 1.09002 * 109.46793 * 299.99568 * 8 7 5 34 34 H 1.08993 * 109.47210 * 59.99885 * 8 7 5 35 35 H 1.09005 * 109.46900 * 294.99323 * 13 9 8 36 36 H 1.08993 * 109.47667 * 54.99912 * 13 9 8 37 37 H 0.97004 * 119.99610 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.91708 * 241.87022 * 22 5 4 39 39 H 1.09005 * 109.91290 * 120.58035 * 22 5 4 40 40 H 1.08998 * 115.54830 * 274.20012 * 24 23 22 41 41 H 1.09004 * 117.49768 * 359.97438 * 25 24 23 42 42 H 1.08997 * 117.50254 * 145.01687 * 25 24 23 43 43 H 1.08999 * 117.50124 * 214.97807 * 26 24 23 44 44 H 1.08998 * 117.49944 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0769 -0.7916 -1.2145 5 6 3.4853 -1.2197 -0.7423 6 1 4.2386 -0.5271 -1.1178 7 7 3.7806 -2.5862 -1.1930 8 6 5.2295 -2.8257 -1.2336 9 6 5.4969 -4.2558 -1.7070 10 1 4.9584 -4.9565 -1.0689 11 6 5.0382 -4.4063 -3.0976 12 7 4.6840 -4.5237 -4.1700 13 6 6.9972 -4.5461 -1.6306 14 6 7.2477 -5.9907 -1.9790 15 1 6.4197 -6.6372 -2.2294 16 6 8.5341 -6.4870 -1.9781 17 7 9.5424 -5.6998 -1.6727 18 14 8.8446 -8.2778 -2.4092 19 1 7.5529 -8.9453 -2.7117 20 1 9.7311 -8.3542 -3.5981 21 1 9.4966 -8.9576 -1.2611 22 6 3.4279 -1.1647 0.7956 23 7 2.0543 -0.7588 1.1642 24 6 2.0581 0.0720 2.3757 25 6 1.3157 1.4086 2.3181 26 6 2.8455 1.3830 2.3307 27 1 -0.3632 0.4650 0.9165 28 1 -0.3633 0.5611 -0.8609 29 1 -0.3633 -1.0261 -0.0555 30 1 2.1430 -0.1513 -2.0941 31 1 1.4561 -1.6643 -1.4171 32 1 3.3584 -2.7702 -2.0907 33 1 5.6948 -2.1219 -1.9238 34 1 5.6485 -2.6882 -0.2369 35 1 7.5276 -3.9052 -2.3351 36 1 7.3545 -4.3488 -0.6200 37 1 10.4474 -6.0490 -1.6716 38 1 4.1441 -0.4322 1.1679 39 1 3.6487 -2.1481 1.2108 40 1 2.0414 -0.4730 3.3195 41 1 0.8248 1.6716 1.3810 42 1 0.8104 1.7431 3.2240 43 1 3.3465 1.7008 3.2451 44 1 3.3610 1.6289 1.4024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572751933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:32 Heat of formation + Delta-G solvation = 54.187973 kcal Electronic energy + Delta-G solvation = -21339.701330 eV Core-core repulsion = 18292.558600 eV Total energy + Delta-G solvation = -3047.142729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29843 -37.57440 -36.14667 -34.41971 -33.36993 -31.74218 -31.17599 -28.85690 -26.19917 -25.56253 -23.14916 -22.67255 -22.17446 -21.82361 -20.36827 -19.35554 -17.38381 -16.71781 -16.50031 -15.88357 -15.47826 -14.92003 -14.63863 -14.50766 -13.89879 -13.38280 -13.23139 -13.14612 -12.97286 -12.61608 -12.37119 -12.27262 -12.09825 -11.83725 -11.68847 -11.49690 -11.28923 -11.25690 -11.14479 -11.03001 -10.82301 -10.76165 -10.71426 -10.48703 -10.35324 -10.24856 -9.54034 -9.21149 -8.51579 -8.45876 -8.33077 -6.09708 -4.12602 3.28770 3.36931 3.41807 3.43941 3.56558 3.62330 3.77205 4.16509 4.34307 4.42051 4.51423 4.59865 4.68843 4.74054 4.80353 4.94753 5.12700 5.24640 5.28495 5.31670 5.31858 5.47988 5.49590 5.58451 5.62063 5.66239 5.70642 5.77533 5.79040 5.82195 5.94022 6.05186 6.13633 6.15140 6.37573 6.54658 6.74919 6.92516 7.14800 7.41849 7.44778 7.52918 7.85757 8.23209 8.39770 8.92278 9.52949 11.01232 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.003204 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.799136 B = 8737.978744 C = 9322.118482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.057 3.943 3 H 0.055 0.945 4 C -0.123 4.123 5 C 0.076 3.924 6 H 0.050 0.950 7 N -0.679 5.679 8 C 0.066 3.934 9 C 0.007 3.993 10 H 0.112 0.888 11 C 0.242 3.758 12 N -0.477 5.477 13 C 0.032 3.968 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.282 1.282 22 C 0.046 3.954 23 N -0.475 5.475 24 C 0.018 3.982 25 C -0.191 4.191 26 C -0.217 4.217 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.340 0.660 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.139 15.529 8.333 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.051 4.051 3 H 0.073 0.927 4 C -0.162 4.162 5 C -0.034 4.034 6 H 0.068 0.932 7 N -0.311 5.311 8 C -0.064 4.064 9 C -0.015 4.015 10 H 0.130 0.870 11 C -0.075 4.075 12 N -0.154 5.154 13 C -0.006 4.006 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.082 4.082 23 N -0.198 5.198 24 C -0.091 4.091 25 C -0.228 4.228 26 C -0.256 4.256 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.159 0.841 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.143 0.857 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.885 14.601 7.468 22.831 hybrid contribution 1.365 0.304 -0.738 1.581 sum -14.520 14.905 6.729 21.869 Atomic orbital electron populations 1.21847 0.93647 1.02869 1.01529 1.22773 0.96193 0.95824 0.90353 0.92730 1.22766 0.95961 1.00570 0.96872 1.22348 0.96071 0.89820 0.95195 0.93210 1.60664 1.12124 1.23864 1.34411 1.22143 0.87113 0.95336 1.01769 1.19330 1.01825 0.96584 0.83788 0.87044 1.29302 0.91170 0.91877 0.95126 1.81011 1.11864 1.09814 1.12743 1.19167 0.85127 0.97488 0.98857 1.21190 0.92817 0.95187 1.47143 0.92427 1.24959 0.96201 0.97854 0.95012 1.69950 0.99179 1.35423 1.48506 0.86535 0.78398 0.85067 0.78088 1.19649 1.21031 1.20809 1.22998 0.88489 1.02136 0.94590 1.64800 1.19188 1.34543 1.01301 1.23012 1.03509 0.86512 0.96089 1.23474 0.94775 1.00546 1.04021 1.23407 0.94389 1.04372 1.03439 0.91928 0.92539 0.91549 0.91242 0.89439 0.84115 0.94782 0.89092 0.95808 0.94200 0.92868 0.93475 0.88454 0.85724 0.87607 0.88506 0.88540 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.93 37.16 0.33 -0.82 16 2 C 0.06 0.53 2.23 -65.78 -0.15 0.38 16 3 H 0.05 0.49 5.76 -51.93 -0.30 0.20 16 4 C -0.12 -1.23 5.96 -24.87 -0.15 -1.38 16 5 C 0.08 0.86 3.31 -66.36 -0.22 0.64 16 6 H 0.05 0.56 7.86 -51.93 -0.41 0.16 16 7 N -0.68 -8.91 6.17 -105.30 -0.65 -9.56 16 8 C 0.07 0.97 4.96 -3.82 -0.02 0.95 16 9 C 0.01 0.12 2.42 -93.41 -0.23 -0.10 16 10 H 0.11 1.98 8.14 -51.93 -0.42 1.55 16 11 C 0.24 4.87 12.98 -20.78 -0.27 4.61 16 12 N -0.48 -10.37 18.53 42.13 0.78 -9.59 16 13 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 14 C -0.53 -14.00 8.60 -34.44 -0.30 -14.30 16 15 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.05 0.51 6.29 -2.75 -0.02 0.49 16 23 N -0.48 -4.96 5.23 -214.73 -1.12 -6.09 16 24 C 0.02 0.17 6.26 -67.71 -0.42 -0.26 16 25 C -0.19 -1.44 8.61 -26.73 -0.23 -1.67 16 26 C -0.22 -1.75 8.86 -26.74 -0.24 -1.99 16 27 H 0.06 0.48 5.92 -51.93 -0.31 0.18 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.95 7.88 -51.93 -0.41 0.54 16 32 H 0.34 4.63 7.47 -39.29 -0.29 4.34 16 33 H 0.03 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.05 0.50 6.72 -51.93 -0.35 0.15 16 39 H 0.10 1.22 7.93 -51.93 -0.41 0.81 16 40 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.11 0.79 4.64 -51.93 -0.24 0.55 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.80 7.19 -51.93 -0.37 0.42 16 LS Contribution 350.04 15.07 5.27 5.27 Total: -1.00 -29.11 350.04 -9.39 -38.50 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.27 Total: 1.15 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -2.12 Total: -11.23 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.26 Total: -50.06 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.11 -9.39 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572751933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.692 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds