Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.72817 * 2 1 4 4 C 1.54941 * 110.66883 * 236.90428 * 2 1 3 5 5 C 1.54591 * 102.92320 * 204.15008 * 4 2 1 6 6 H 1.09002 * 110.39300 * 262.99876 * 5 4 2 7 7 N 1.46894 * 110.30821 * 140.87164 * 5 4 2 8 8 C 1.46905 * 111.00148 * 157.83291 * 7 5 4 9 9 C 1.52999 * 109.47061 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.47270 * 304.99586 * 9 8 7 11 11 C 1.47199 * 109.47604 * 64.99713 * 9 8 7 12 12 N 6.91377 * 117.14128 * 222.67058 * 2 1 3 13 13 C 1.53004 * 109.46745 * 184.99943 * 9 8 7 14 14 C 1.50705 * 109.46900 * 175.00020 * 13 9 8 15 15 H 1.07995 * 120.00053 * 359.97438 * 14 13 9 16 16 C 1.37882 * 119.99811 * 179.97438 * 14 13 9 17 17 N 1.31515 * 119.99711 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99956 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46938 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46952 * 120.00177 * 18 16 14 21 21 H 1.48503 * 109.47198 * 240.00386 * 18 16 14 22 22 C 1.53997 * 105.13862 * 21.95584 * 5 4 2 23 23 N 1.47898 * 107.05794 * 1.22553 * 22 5 4 24 24 C 1.46906 * 110.99718 * 214.15522 * 23 22 5 25 25 C 1.52998 * 117.49903 * 128.50020 * 24 23 22 26 26 C 1.52991 * 117.49945 * 59.87556 * 24 23 22 27 27 H 1.09003 * 109.46435 * 296.90256 * 1 2 3 28 28 H 1.08998 * 109.46888 * 56.90439 * 1 2 3 29 29 H 1.08993 * 109.46885 * 176.90630 * 1 2 3 30 30 H 1.08997 * 110.72523 * 85.78892 * 4 2 1 31 31 H 1.09001 * 110.71619 * 322.51002 * 4 2 1 32 32 H 1.00899 * 111.00323 * 33.87336 * 7 5 4 33 33 H 1.09002 * 109.46793 * 299.99568 * 8 7 5 34 34 H 1.08993 * 109.47210 * 59.99885 * 8 7 5 35 35 H 1.09005 * 109.46900 * 294.99323 * 13 9 8 36 36 H 1.08993 * 109.47667 * 54.99912 * 13 9 8 37 37 H 0.97004 * 119.99610 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.91708 * 241.87022 * 22 5 4 39 39 H 1.09005 * 109.91290 * 120.58035 * 22 5 4 40 40 H 1.08998 * 115.54830 * 274.20012 * 24 23 22 41 41 H 1.09004 * 117.49768 * 359.97438 * 25 24 23 42 42 H 1.08997 * 117.50254 * 145.01687 * 25 24 23 43 43 H 1.08999 * 117.50124 * 214.97807 * 26 24 23 44 44 H 1.08998 * 117.49944 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0769 -0.7916 -1.2145 5 6 3.4853 -1.2197 -0.7423 6 1 4.2386 -0.5271 -1.1178 7 7 3.7806 -2.5862 -1.1930 8 6 5.2295 -2.8257 -1.2336 9 6 5.4969 -4.2558 -1.7070 10 1 4.9584 -4.9565 -1.0689 11 6 5.0382 -4.4063 -3.0976 12 7 4.6840 -4.5237 -4.1700 13 6 6.9972 -4.5461 -1.6306 14 6 7.2477 -5.9907 -1.9790 15 1 6.4197 -6.6372 -2.2294 16 6 8.5341 -6.4870 -1.9781 17 7 9.5424 -5.6998 -1.6727 18 14 8.8446 -8.2778 -2.4092 19 1 7.5529 -8.9453 -2.7117 20 1 9.7311 -8.3542 -3.5981 21 1 9.4966 -8.9576 -1.2611 22 6 3.4279 -1.1647 0.7956 23 7 2.0543 -0.7588 1.1642 24 6 2.0581 0.0720 2.3757 25 6 1.3157 1.4086 2.3181 26 6 2.8455 1.3830 2.3307 27 1 -0.3632 0.4650 0.9165 28 1 -0.3633 0.5611 -0.8609 29 1 -0.3633 -1.0261 -0.0555 30 1 2.1430 -0.1513 -2.0941 31 1 1.4561 -1.6643 -1.4171 32 1 3.3584 -2.7702 -2.0907 33 1 5.6948 -2.1219 -1.9238 34 1 5.6485 -2.6882 -0.2369 35 1 7.5276 -3.9052 -2.3351 36 1 7.3545 -4.3488 -0.6200 37 1 10.4474 -6.0490 -1.6716 38 1 4.1441 -0.4322 1.1679 39 1 3.6487 -2.1481 1.2108 40 1 2.0414 -0.4730 3.3195 41 1 0.8248 1.6716 1.3810 42 1 0.8104 1.7431 3.2240 43 1 3.3465 1.7008 3.2451 44 1 3.3610 1.6289 1.4024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572751933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = 36.168475 kcal Electronic energy + Delta-G solvation = -21340.482714 eV Core-core repulsion = 18292.558600 eV Total energy + Delta-G solvation = -3047.924113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06319 -38.89246 -37.26962 -35.81778 -34.98661 -33.19930 -32.06019 -30.00349 -27.79239 -26.40414 -24.52562 -23.56402 -23.29246 -22.98472 -21.25417 -20.11589 -18.52799 -18.31085 -18.01847 -16.90911 -16.63641 -16.21142 -15.89538 -15.42975 -15.03889 -14.68787 -14.46020 -14.40169 -14.02357 -13.92778 -13.69705 -13.52813 -13.13602 -13.11833 -13.03371 -12.69646 -12.53899 -12.46155 -12.33217 -12.20234 -12.13412 -11.92265 -11.89935 -11.58242 -11.45525 -11.35460 -11.10158 -10.99201 -10.55861 -9.44772 -9.21778 -8.19967 -6.27980 1.38963 1.41877 1.52484 1.93704 1.96108 2.41293 2.76905 3.07128 3.12586 3.15186 3.24650 3.57600 3.72555 3.92377 4.05702 4.08283 4.15968 4.23672 4.28751 4.36311 4.51887 4.55337 4.65355 4.73283 4.78934 4.81952 4.89218 4.94842 4.96242 5.05136 5.05454 5.13135 5.14584 5.20125 5.22083 5.46136 5.47165 5.62209 5.79174 5.93238 6.10529 6.18902 6.21946 6.35137 6.74686 6.87138 7.40635 8.91151 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.003204 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.799136 B = 8737.978744 C = 9322.118482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.060 3.940 3 H 0.060 0.940 4 C -0.121 4.121 5 C 0.076 3.924 6 H 0.053 0.947 7 N -0.679 5.679 8 C 0.079 3.921 9 C 0.019 3.981 10 H 0.122 0.878 11 C 0.252 3.748 12 N -0.504 5.504 13 C 0.039 3.961 14 C -0.538 4.538 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.923 5.923 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.049 3.951 23 N -0.488 5.488 24 C 0.002 3.998 25 C -0.180 4.180 26 C -0.215 4.215 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.338 0.662 33 H 0.033 0.967 34 H 0.102 0.898 35 H 0.001 0.999 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.219 16.212 8.874 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.048 4.048 3 H 0.078 0.922 4 C -0.159 4.159 5 C -0.035 4.035 6 H 0.071 0.929 7 N -0.311 5.311 8 C -0.051 4.051 9 C -0.002 4.002 10 H 0.140 0.860 11 C -0.064 4.064 12 N -0.181 5.181 13 C 0.000 4.000 14 C -0.576 4.576 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.775 3.225 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.079 4.079 23 N -0.211 5.211 24 C -0.107 4.107 25 C -0.217 4.217 26 C -0.254 4.254 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.156 0.844 33 H 0.051 0.949 34 H 0.120 0.880 35 H 0.019 0.981 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.982 15.289 8.016 24.216 hybrid contribution 1.681 0.116 -0.887 1.904 sum -15.300 15.405 7.130 22.853 Atomic orbital electron populations 1.21823 0.92759 1.02438 1.02485 1.22795 0.96830 0.95736 0.89465 0.92165 1.22758 0.94863 1.00560 0.97728 1.22404 0.96990 0.88665 0.95403 0.92893 1.60638 1.10771 1.25411 1.34231 1.21963 0.88356 0.92708 1.02090 1.19213 0.98647 0.99285 0.83104 0.86038 1.29609 0.90531 0.90987 0.95283 1.81011 1.12693 1.10901 1.13510 1.18986 0.88052 0.95277 0.97703 1.21586 0.92720 0.96862 1.46465 0.92820 1.25716 0.96281 1.01595 0.95219 1.70040 0.99542 1.37060 1.49688 0.85637 0.78188 0.80772 0.77941 1.19390 1.21100 1.19797 1.22891 0.89296 1.01428 0.94237 1.64767 1.18602 1.35613 1.02156 1.23052 1.05179 0.86973 0.95512 1.23537 0.94443 0.98879 1.04792 1.23402 0.94931 1.03498 1.03532 0.91353 0.91158 0.92704 0.90073 0.90311 0.84379 0.94853 0.88010 0.98106 0.94582 0.92717 0.93102 0.90096 0.85801 0.87344 0.87176 0.87783 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.93 71.98 0.64 -1.35 16 2 C 0.06 1.01 2.23 45.27 0.10 1.11 16 3 H 0.06 0.96 5.76 -2.39 -0.01 0.95 16 4 C -0.12 -2.24 5.96 31.80 0.19 -2.05 16 5 C 0.08 1.61 3.31 45.79 0.15 1.76 16 6 H 0.05 1.12 7.86 -2.39 -0.02 1.10 16 7 N -0.68 -17.12 6.17 -487.05 -3.00 -20.12 16 8 C 0.08 2.24 4.96 86.30 0.43 2.67 16 9 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 10 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 11 C 0.25 10.04 12.98 89.45 1.16 11.20 16 12 N -0.50 -21.69 18.53 20.00 0.37 -21.32 16 13 C 0.04 1.79 4.42 29.85 0.13 1.92 16 14 C -0.54 -28.67 8.60 25.60 0.22 -28.45 16 15 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 16 C 0.01 0.59 5.46 84.66 0.46 1.05 16 17 N -0.92 -53.14 13.29 21.45 0.28 -52.85 16 18 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.05 1.05 6.29 86.45 0.54 1.60 16 23 N -0.49 -9.61 5.23 -833.26 -4.36 -13.97 16 24 C 0.00 0.04 6.26 44.91 0.28 0.32 16 25 C -0.18 -2.31 8.61 30.59 0.26 -2.05 16 26 C -0.21 -3.09 8.86 30.59 0.27 -2.82 16 27 H 0.07 0.91 5.92 -2.39 -0.01 0.90 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.61 7.88 -2.39 -0.02 1.60 16 32 H 0.34 8.86 7.47 -89.69 -0.67 8.19 16 33 H 0.03 0.96 8.07 -2.39 -0.02 0.94 16 34 H 0.10 2.70 8.11 -2.39 -0.02 2.68 16 35 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 38 H 0.05 1.02 6.72 -2.39 -0.02 1.01 16 39 H 0.08 1.98 7.93 -2.38 -0.02 1.97 16 40 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.11 1.35 4.64 -2.39 -0.01 1.34 16 42 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 1.35 7.19 -2.39 -0.02 1.33 16 Total: -1.00 -60.94 350.04 0.45 -60.49 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.32 Total: 16.49 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 4.82 Total: -14.42 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -6.71 Total: -108.26 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -60.94 0.45 -60.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572751933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.656 kcal (2) G-P(sol) polarization free energy of solvation -60.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds