Wall clock time and date at job start Mon Mar 30 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47567 * 2 1 4 4 N 1.46906 * 109.46776 * 120.00043 * 2 1 3 5 5 C 1.46902 * 110.99573 * 274.99857 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.47223 * 304.99930 * 6 5 4 8 8 C 1.47198 * 109.46966 * 65.00286 * 6 5 4 9 9 N 4.90944 * 135.90967 * 112.22955 * 2 1 3 10 10 C 1.53008 * 109.46744 * 185.00131 * 6 5 4 11 11 C 1.50694 * 109.46650 * 175.00063 * 10 6 5 12 12 H 1.08003 * 120.00498 * 359.97438 * 11 10 6 13 13 C 1.37876 * 119.99879 * 179.97438 * 11 10 6 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00416 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47065 * 59.99677 * 15 13 11 17 17 H 1.48494 * 109.47505 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46992 * 300.00046 * 15 13 11 19 19 C 1.50696 * 109.47272 * 239.99632 * 2 1 3 20 20 C 1.29821 * 118.55427 * 115.00259 * 19 2 1 21 21 C 1.50146 * 123.28496 * 180.37151 * 20 19 2 22 22 N 1.46838 * 110.27624 * 342.95111 * 21 20 19 23 23 C 1.46906 * 110.99927 * 174.31032 * 22 21 20 24 24 C 1.47246 * 110.20294 * 50.92662 * 22 21 20 25 25 C 1.50308 * 118.55278 * 294.74092 * 19 2 1 26 26 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47030 * 300.00758 * 1 2 3 28 28 H 1.09002 * 109.46644 * 60.00101 * 1 2 3 29 29 H 1.00896 * 111.00309 * 151.04268 * 4 2 1 30 30 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 31 31 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 32 32 H 1.09005 * 109.46614 * 294.99810 * 10 6 5 33 33 H 1.08993 * 109.46898 * 55.00161 * 10 6 5 34 34 H 0.97000 * 119.99810 * 180.02562 * 14 13 11 35 35 H 1.07997 * 118.35932 * 0.35299 * 20 19 2 36 36 H 1.09001 * 109.33254 * 103.20265 * 21 20 19 37 37 H 1.08998 * 109.33318 * 222.86549 * 21 20 19 38 38 H 1.08998 * 109.46877 * 63.96056 * 23 22 21 39 39 H 1.08998 * 109.46942 * 183.95607 * 23 22 21 40 40 H 1.09002 * 109.47063 * 303.95376 * 23 22 21 41 41 H 1.08999 * 109.63801 * 50.89233 * 24 22 21 42 42 H 1.09005 * 109.63327 * 171.29364 * 24 22 21 43 43 H 1.09000 * 109.43164 * 283.57109 * 25 19 2 44 44 H 1.08999 * 109.43287 * 43.42642 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5949 -0.5332 3.5746 7 1 1.9689 -1.4081 3.7501 8 6 3.9837 -0.9622 3.3422 9 7 5.0562 -1.2923 3.1621 10 6 2.5425 0.3851 4.7973 11 6 2.9302 -0.3942 6.0275 12 1 3.1878 -1.4398 5.9456 13 6 2.9562 0.2278 7.2578 14 7 2.6421 1.5010 7.3576 15 14 3.4360 -0.7381 8.7829 16 1 4.8135 -1.2684 8.6199 17 1 3.3866 0.1533 9.9694 18 1 2.4901 -1.8672 8.9716 19 6 2.0324 -0.7105 -1.2304 20 6 2.6937 -0.0277 -2.1146 21 6 3.2349 -0.6255 -3.3812 22 7 3.2728 -2.0897 -3.2772 23 6 3.6718 -2.6980 -4.5534 24 6 1.9654 -2.6021 -2.8343 25 6 1.7510 -2.1797 -1.3768 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.9172 -1.1206 1.0289 30 1 2.7588 1.0461 2.1183 31 1 1.0870 0.6164 2.5525 32 1 3.2363 1.2143 4.6588 33 1 1.5312 0.7734 4.9170 34 1 2.6607 1.9387 8.2231 35 1 2.8627 1.0229 -1.9302 36 1 2.5962 -0.3394 -4.2169 37 1 4.2442 -0.2520 -3.5540 38 1 4.6908 -2.3970 -4.7965 39 1 3.6240 -3.7836 -4.4691 40 1 2.9966 -2.3647 -5.3416 41 1 1.1770 -2.1845 -3.4606 42 1 1.9541 -3.6896 -2.9080 43 1 2.4225 -2.7438 -0.7297 44 1 0.7186 -2.3814 -1.0910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576510962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:32 Heat of formation + Delta-G solvation = 31.354375 kcal Electronic energy + Delta-G solvation = -21189.838686 eV Core-core repulsion = 18141.705818 eV Total energy + Delta-G solvation = -3048.132868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.57922 -37.62417 -36.04902 -34.07710 -33.09877 -31.55850 -31.04633 -29.44622 -27.01609 -26.23698 -24.09579 -23.46281 -22.34026 -21.79650 -20.75140 -17.79822 -16.80206 -16.61785 -16.28873 -15.64207 -15.30243 -15.00062 -14.73733 -14.35509 -14.10295 -13.60886 -13.23740 -13.01484 -12.96982 -12.78518 -12.66707 -12.44221 -12.19343 -12.10458 -11.95803 -11.76420 -11.58505 -11.42644 -11.18593 -11.04154 -10.93741 -10.69323 -10.57605 -10.37540 -10.22306 -9.52981 -9.23894 -8.99831 -8.58732 -8.43674 -8.29097 -6.07900 -4.10958 2.05032 3.32676 3.36685 3.40516 3.61095 3.66657 3.67875 4.26696 4.43375 4.49196 4.62466 4.84009 4.90300 5.00904 5.07535 5.12639 5.23182 5.29181 5.30029 5.36107 5.38436 5.47110 5.56532 5.60588 5.64999 5.71452 5.75954 5.80284 5.97965 6.04455 6.14950 6.25522 6.32087 6.40641 6.57519 6.72139 6.77691 6.88630 7.19030 7.44996 7.50311 7.55564 7.87188 8.25104 8.44594 8.93453 9.54347 11.02992 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.003179 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.468289 B = 8804.769043 C = 9201.569742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.116 3.884 3 H 0.047 0.953 4 N -0.683 5.683 5 C 0.067 3.933 6 C 0.008 3.992 7 H 0.111 0.889 8 C 0.240 3.760 9 N -0.476 5.476 10 C 0.033 3.967 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.104 4.104 20 C -0.166 4.166 21 C 0.088 3.912 22 N -0.539 5.539 23 C 0.023 3.977 24 C 0.050 3.950 25 C -0.072 4.072 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.341 0.659 30 H 0.034 0.966 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.110 0.890 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 -3.715 -22.475 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 H 0.065 0.935 4 N -0.314 5.314 5 C -0.063 4.063 6 C -0.014 4.014 7 H 0.129 0.871 8 C -0.076 4.076 9 N -0.153 5.153 10 C -0.006 4.006 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.105 4.105 20 C -0.185 4.185 21 C -0.039 4.039 22 N -0.263 5.263 23 C -0.125 4.125 24 C -0.077 4.077 25 C -0.109 4.109 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.159 0.841 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.055 -4.440 -22.089 22.893 hybrid contribution 0.150 0.538 0.237 0.607 sum -3.905 -3.902 -21.852 22.538 Atomic orbital electron populations 1.21780 0.93931 1.02476 1.01220 1.20647 0.96142 0.95032 0.87493 0.93487 1.60678 1.33561 1.33306 1.03895 1.22135 1.01610 0.93423 0.89123 1.19323 0.83687 1.01489 0.96949 0.87141 1.29336 0.95148 0.91989 0.91159 1.81060 1.12609 1.10610 1.10993 1.19153 0.98837 0.93743 0.88822 1.21117 1.46698 0.96644 0.91998 0.92541 1.24953 0.95039 0.94878 0.99104 1.69931 1.48292 1.09916 1.24965 0.86650 0.79261 0.79900 0.82252 1.20270 1.21210 1.20002 1.21058 0.97832 0.95978 0.95635 1.22047 1.00334 0.99723 0.96424 1.20919 1.00654 0.87175 0.95196 1.62424 1.29092 1.05560 1.29240 1.22395 1.00661 1.00036 0.89396 1.22302 0.89251 0.99930 0.96261 1.20425 1.02390 0.92651 0.95482 0.91780 0.92071 0.93031 0.84052 0.94801 0.89080 0.95809 0.94242 0.92760 0.87212 0.93991 0.89891 0.91292 0.91246 0.95737 0.94648 0.90483 0.89679 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.26 37.16 0.34 -1.06 16 2 C 0.12 1.34 2.76 -68.86 -0.19 1.15 16 3 H 0.05 0.56 7.28 -51.93 -0.38 0.18 16 4 N -0.68 -9.17 6.07 -107.94 -0.66 -9.83 16 5 C 0.07 1.01 4.92 -3.82 -0.02 0.99 16 6 C 0.01 0.14 2.42 -93.40 -0.23 -0.09 16 7 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 8 C 0.24 4.96 12.98 -20.74 -0.27 4.69 16 9 N -0.48 -10.62 18.54 42.18 0.78 -9.84 16 10 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 11 C -0.53 -14.13 8.60 -34.44 -0.30 -14.43 16 12 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.10 -1.14 4.58 -100.93 -0.46 -1.61 16 20 C -0.17 -1.75 9.53 -35.96 -0.34 -2.09 16 21 C 0.09 0.84 5.66 -5.28 -0.03 0.81 16 22 N -0.54 -5.39 4.97 -244.29 -1.21 -6.60 16 23 C 0.02 0.18 9.62 60.07 0.58 0.76 16 24 C 0.05 0.47 5.60 -3.50 -0.02 0.45 16 25 C -0.07 -0.74 5.76 -27.94 -0.16 -0.91 16 26 H 0.06 0.66 6.97 -51.93 -0.36 0.29 16 27 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.34 4.99 7.42 -39.29 -0.29 4.69 16 30 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 31 H 0.09 1.28 7.44 -51.93 -0.39 0.89 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.11 1.08 7.64 -52.49 -0.40 0.68 16 36 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.48 7.98 -51.93 -0.41 0.07 16 40 H 0.02 0.17 8.09 -51.93 -0.42 -0.25 16 41 H 0.04 0.31 8.08 -51.93 -0.42 -0.10 16 42 H 0.08 0.63 7.95 -51.93 -0.41 0.22 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.77 6.86 -51.93 -0.36 0.42 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -29.75 357.50 -8.86 -38.61 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.56 Total: -0.15 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.31 Total: -9.05 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.35 Total: -51.24 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.75 -8.86 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576510962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.962 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds