Wall clock time and date at job start Mon Mar 30 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47567 * 2 1 4 4 N 1.46906 * 109.46776 * 120.00043 * 2 1 3 5 5 C 1.46902 * 110.99573 * 274.99857 * 4 2 1 6 6 C 1.53008 * 109.46622 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.47223 * 304.99930 * 6 5 4 8 8 C 1.47198 * 109.46966 * 65.00286 * 6 5 4 9 9 N 4.90944 * 135.90967 * 112.22955 * 2 1 3 10 10 C 1.53008 * 109.46744 * 185.00131 * 6 5 4 11 11 C 1.50694 * 109.46650 * 175.00063 * 10 6 5 12 12 H 1.08003 * 120.00498 * 359.97438 * 11 10 6 13 13 C 1.37876 * 119.99879 * 179.97438 * 11 10 6 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00416 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47065 * 59.99677 * 15 13 11 17 17 H 1.48494 * 109.47505 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46992 * 300.00046 * 15 13 11 19 19 C 1.50696 * 109.47272 * 239.99632 * 2 1 3 20 20 C 1.29821 * 118.55427 * 115.00259 * 19 2 1 21 21 C 1.50146 * 123.28496 * 180.37151 * 20 19 2 22 22 N 1.46838 * 110.27624 * 342.95111 * 21 20 19 23 23 C 1.46906 * 110.99927 * 174.31032 * 22 21 20 24 24 C 1.47246 * 110.20294 * 50.92662 * 22 21 20 25 25 C 1.50308 * 118.55278 * 294.74092 * 19 2 1 26 26 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47030 * 300.00758 * 1 2 3 28 28 H 1.09002 * 109.46644 * 60.00101 * 1 2 3 29 29 H 1.00896 * 111.00309 * 151.04268 * 4 2 1 30 30 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 31 31 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 32 32 H 1.09005 * 109.46614 * 294.99810 * 10 6 5 33 33 H 1.08993 * 109.46898 * 55.00161 * 10 6 5 34 34 H 0.97000 * 119.99810 * 180.02562 * 14 13 11 35 35 H 1.07997 * 118.35932 * 0.35299 * 20 19 2 36 36 H 1.09001 * 109.33254 * 103.20265 * 21 20 19 37 37 H 1.08998 * 109.33318 * 222.86549 * 21 20 19 38 38 H 1.08998 * 109.46877 * 63.96056 * 23 22 21 39 39 H 1.08998 * 109.46942 * 183.95607 * 23 22 21 40 40 H 1.09002 * 109.47063 * 303.95376 * 23 22 21 41 41 H 1.08999 * 109.63801 * 50.89233 * 24 22 21 42 42 H 1.09005 * 109.63327 * 171.29364 * 24 22 21 43 43 H 1.09000 * 109.43164 * 283.57109 * 25 19 2 44 44 H 1.08999 * 109.43287 * 43.42642 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5949 -0.5332 3.5746 7 1 1.9689 -1.4081 3.7501 8 6 3.9837 -0.9622 3.3422 9 7 5.0562 -1.2923 3.1621 10 6 2.5425 0.3851 4.7973 11 6 2.9302 -0.3942 6.0275 12 1 3.1878 -1.4398 5.9456 13 6 2.9562 0.2278 7.2578 14 7 2.6421 1.5010 7.3576 15 14 3.4360 -0.7381 8.7829 16 1 4.8135 -1.2684 8.6199 17 1 3.3866 0.1533 9.9694 18 1 2.4901 -1.8672 8.9716 19 6 2.0324 -0.7105 -1.2304 20 6 2.6937 -0.0277 -2.1146 21 6 3.2349 -0.6255 -3.3812 22 7 3.2728 -2.0897 -3.2772 23 6 3.6718 -2.6980 -4.5534 24 6 1.9654 -2.6021 -2.8343 25 6 1.7510 -2.1797 -1.3768 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.9172 -1.1206 1.0289 30 1 2.7588 1.0461 2.1183 31 1 1.0870 0.6164 2.5525 32 1 3.2363 1.2143 4.6588 33 1 1.5312 0.7734 4.9170 34 1 2.6607 1.9387 8.2231 35 1 2.8627 1.0229 -1.9302 36 1 2.5962 -0.3394 -4.2169 37 1 4.2442 -0.2520 -3.5540 38 1 4.6908 -2.3970 -4.7965 39 1 3.6240 -3.7836 -4.4691 40 1 2.9966 -2.3647 -5.3416 41 1 1.1770 -2.1845 -3.4606 42 1 1.9541 -3.6896 -2.9080 43 1 2.4225 -2.7438 -0.7297 44 1 0.7186 -2.3814 -1.0910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576510962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:31 Heat of formation + Delta-G solvation = 12.840448 kcal Electronic energy + Delta-G solvation = -21190.641510 eV Core-core repulsion = 18141.705818 eV Total energy + Delta-G solvation = -3048.935692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38726 -38.89885 -37.32407 -35.69796 -34.61593 -32.98136 -31.79764 -30.61443 -28.04687 -27.61376 -24.89260 -24.72262 -23.63014 -23.20972 -21.67711 -18.70857 -18.44497 -18.21796 -17.43693 -16.67356 -16.43311 -16.20952 -15.75496 -15.51067 -15.07800 -14.82690 -14.54959 -14.34208 -14.29349 -13.90422 -13.70150 -13.53026 -13.45666 -13.23135 -13.08911 -12.91912 -12.85515 -12.73667 -12.47263 -12.41548 -12.35369 -12.10639 -11.95341 -11.78248 -11.42632 -11.28268 -11.04208 -10.54511 -9.82675 -9.38720 -9.28429 -8.19063 -6.27366 1.21959 1.41538 1.42949 1.50194 1.94585 1.96880 2.41982 3.01301 3.15867 3.21741 3.25763 3.64631 3.85363 4.14135 4.22522 4.25678 4.36828 4.39118 4.45039 4.54149 4.55012 4.58890 4.65620 4.71199 4.78449 4.86502 4.93557 4.94501 4.96812 5.00975 5.08000 5.16918 5.23634 5.44995 5.47359 5.51235 5.62972 5.79521 5.89265 6.05776 6.09444 6.19418 6.23838 6.37168 6.75897 6.87529 7.41098 8.91704 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.003179 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.468289 B = 8804.769043 C = 9201.569742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.116 3.884 3 H 0.044 0.956 4 N -0.679 5.679 5 C 0.079 3.921 6 C 0.020 3.980 7 H 0.124 0.876 8 C 0.251 3.749 9 N -0.506 5.506 10 C 0.040 3.960 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.924 5.924 15 Si 0.949 3.051 16 H -0.281 1.281 17 H -0.282 1.282 18 H -0.262 1.262 19 C -0.115 4.115 20 C -0.167 4.167 21 C 0.087 3.913 22 N -0.560 5.560 23 C 0.024 3.976 24 C 0.053 3.947 25 C -0.070 4.070 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.334 0.666 30 H 0.029 0.971 31 H 0.106 0.894 32 H -0.001 1.001 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 -4.396 -23.454 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.062 0.938 4 N -0.310 5.310 5 C -0.052 4.052 6 C -0.002 4.002 7 H 0.142 0.858 8 C -0.065 4.065 9 N -0.183 5.183 10 C 0.001 3.999 11 C -0.578 4.578 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.564 5.564 15 Si 0.774 3.226 16 H -0.207 1.207 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.116 4.116 20 C -0.186 4.186 21 C -0.040 4.040 22 N -0.284 5.284 23 C -0.124 4.124 24 C -0.075 4.075 25 C -0.107 4.107 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.017 0.983 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.814 -5.131 -23.084 24.132 hybrid contribution 0.399 0.768 0.495 0.997 sum -4.415 -4.363 -22.589 23.426 Atomic orbital electron populations 1.21746 0.92772 1.02700 1.01724 1.20707 0.96975 0.94695 0.86868 0.93763 1.60686 1.33014 1.33003 1.04290 1.21976 1.01997 0.92878 0.88301 1.19236 0.82925 1.01273 0.96750 0.85825 1.29708 0.95359 0.91170 0.90276 1.81059 1.13497 1.11696 1.12061 1.18974 0.97721 0.93434 0.89794 1.21537 1.46062 0.96844 0.93405 0.92780 1.25719 0.95270 0.95759 1.02030 1.70027 1.49499 1.11189 1.25637 0.85747 0.78724 0.78989 0.79116 1.20721 1.20690 1.18697 1.21073 0.98581 0.96371 0.95558 1.22252 0.99570 1.00034 0.96770 1.20941 1.00968 0.87150 0.94937 1.62427 1.29545 1.05848 1.30629 1.22423 1.00979 1.00289 0.88706 1.22285 0.89224 1.00466 0.95493 1.20389 1.02274 0.92001 0.96015 0.91675 0.92353 0.91739 0.84862 0.95275 0.87597 0.98285 0.94466 0.92697 0.86868 0.92905 0.89606 0.91009 0.90678 0.94850 0.94099 0.89627 0.91418 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.26 71.98 0.67 -1.79 16 2 C 0.12 2.52 2.76 44.17 0.12 2.65 16 3 H 0.04 1.00 7.28 -2.39 -0.02 0.98 16 4 N -0.68 -17.46 6.07 -495.42 -3.01 -20.46 16 5 C 0.08 2.28 4.92 86.31 0.42 2.70 16 6 C 0.02 0.73 2.42 -12.59 -0.03 0.70 16 7 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 8 C 0.25 10.27 12.98 89.44 1.16 11.43 16 9 N -0.51 -22.50 18.54 20.01 0.37 -22.13 16 10 C 0.04 1.84 4.42 29.85 0.13 1.98 16 11 C -0.54 -28.90 8.60 25.60 0.22 -28.68 16 12 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 13 C 0.01 0.62 5.46 84.65 0.46 1.08 16 14 N -0.92 -53.39 13.29 21.45 0.28 -53.11 16 15 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 19 C -0.12 -2.38 4.58 -15.40 -0.07 -2.45 16 20 C -0.17 -3.29 9.53 26.69 0.25 -3.03 16 21 C 0.09 1.52 5.66 85.40 0.48 2.01 16 22 N -0.56 -10.34 4.97 -926.81 -4.61 -14.95 16 23 C 0.02 0.33 9.62 127.69 1.23 1.55 16 24 C 0.05 0.90 5.60 86.32 0.48 1.38 16 25 C -0.07 -1.35 5.76 29.81 0.17 -1.18 16 26 H 0.06 1.21 6.97 -2.39 -0.02 1.19 16 27 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.33 9.51 7.42 -89.70 -0.67 8.85 16 30 H 0.03 0.88 8.05 -2.39 -0.02 0.86 16 31 H 0.11 2.79 7.44 -2.38 -0.02 2.77 16 32 H 0.00 -0.07 8.14 -2.38 -0.02 -0.08 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.11 2.10 7.64 -2.91 -0.02 2.07 16 36 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.92 7.98 -2.39 -0.02 0.90 16 40 H 0.03 0.39 8.09 -2.39 -0.02 0.37 16 41 H 0.04 0.64 8.08 -2.39 -0.02 0.63 16 42 H 0.09 1.27 7.95 -2.38 -0.02 1.25 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 1.53 6.86 -2.39 -0.02 1.52 16 Total: -1.00 -62.18 357.50 1.08 -61.10 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.30 Total: 15.47 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.71 Total: -11.68 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -6.96 Total: -110.65 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -62.18 1.08 -61.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576510962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.940 kcal (2) G-P(sol) polarization free energy of solvation -62.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds