Wall clock time and date at job start Mon Mar 30 2020 01:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 H 1.08990 * 109.47170 * 54.99770 * 6 5 4 8 8 C 1.47196 * 109.47160 * 294.99517 * 6 5 4 9 9 N 4.90936 * 135.91293 * 247.77070 * 2 1 3 10 10 C 1.53002 * 109.46776 * 174.99873 * 6 5 4 11 11 C 1.50701 * 109.46807 * 184.99822 * 10 6 5 12 12 H 1.07998 * 120.00496 * 359.97438 * 11 10 6 13 13 C 1.37879 * 119.99849 * 180.02562 * 11 10 6 14 14 N 1.31514 * 119.99832 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00049 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46944 * 59.99994 * 15 13 11 17 17 H 1.48494 * 109.47003 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47091 * 300.00102 * 15 13 11 19 19 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 20 20 C 1.29818 * 118.55373 * 245.00111 * 19 2 1 21 21 C 1.50142 * 123.28687 * 180.36991 * 20 19 2 22 22 N 1.46849 * 110.27422 * 342.94666 * 21 20 19 23 23 C 1.46897 * 110.99899 * 174.31133 * 22 21 20 24 24 C 1.47248 * 110.20195 * 50.92467 * 22 21 20 25 25 C 1.50308 * 118.55358 * 64.73114 * 19 2 1 26 26 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 28 28 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 29 29 H 1.00898 * 110.99995 * 208.95221 * 4 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 32 32 H 1.08993 * 109.47416 * 304.99509 * 10 6 5 33 33 H 1.09001 * 109.46966 * 65.00241 * 10 6 5 34 34 H 0.97010 * 119.99808 * 180.02562 * 14 13 11 35 35 H 1.08003 * 118.35813 * 0.39374 * 20 19 2 36 36 H 1.08995 * 109.34129 * 103.19387 * 21 20 19 37 37 H 1.09003 * 109.34123 * 222.86795 * 21 20 19 38 38 H 1.09000 * 109.46862 * 56.05121 * 23 22 21 39 39 H 1.09005 * 109.46862 * 176.04605 * 23 22 21 40 40 H 1.08991 * 109.47561 * 296.04845 * 23 22 21 41 41 H 1.09002 * 109.63527 * 50.89080 * 24 22 21 42 42 H 1.09002 * 109.63171 * 171.29562 * 24 22 21 43 43 H 1.09002 * 109.42871 * 283.58050 * 25 19 2 44 44 H 1.08995 * 109.42986 * 43.43316 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5949 -0.5333 -3.5745 7 1 1.9690 -1.4081 -3.7500 8 6 3.9837 -0.9622 -3.3421 9 7 5.0563 -1.2922 -3.1618 10 6 2.5426 0.3850 -4.7972 11 6 2.9303 -0.3943 -6.0275 12 1 3.1887 -1.4397 -5.9455 13 6 2.9563 0.2277 -7.2577 14 7 2.6431 1.5011 -7.3574 15 14 3.4377 -0.7380 -8.7826 16 1 2.4927 -1.8679 -8.9717 17 1 3.3868 0.1532 -9.9694 18 1 4.8155 -1.2671 -8.6190 19 6 2.0324 -0.7104 1.2304 20 6 2.6936 -0.0276 2.1147 21 6 3.2487 -0.6287 3.3735 22 7 2.6092 -1.9226 3.6446 23 6 3.2338 -2.5875 4.7960 24 6 2.6647 -2.7780 2.4473 25 6 1.7406 -2.1770 1.3827 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 2.9172 -1.1205 -1.0288 30 1 2.7588 1.0462 -2.1183 31 1 1.0870 0.6163 -2.5525 32 1 1.5312 0.7733 -4.9170 33 1 3.2363 1.2142 -4.6588 34 1 2.6611 1.9387 -8.2231 35 1 2.8519 1.0257 1.9360 36 1 4.3231 -0.7737 3.2611 37 1 3.0611 0.0458 4.2090 38 1 3.1952 -1.9267 5.6620 39 1 2.6966 -3.5096 5.0184 40 1 4.2726 -2.8196 4.5621 41 1 3.6871 -2.8158 2.0712 42 1 2.3299 -3.7840 2.7001 43 1 0.7011 -2.3107 1.6826 44 1 1.9105 -2.6812 0.4315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576510971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:39 Heat of formation + Delta-G solvation = 30.961982 kcal Electronic energy + Delta-G solvation = -21196.749696 eV Core-core repulsion = 18148.599812 eV Total energy + Delta-G solvation = -3048.149884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.57587 -37.64453 -36.07035 -34.10350 -33.11012 -31.57304 -31.03563 -29.46273 -26.99067 -26.25997 -24.08694 -23.44409 -22.38058 -21.82390 -20.75593 -17.78499 -16.82224 -16.64691 -16.28228 -15.65748 -15.26282 -14.98459 -14.82685 -14.40643 -13.97890 -13.63018 -13.31343 -13.07900 -12.87875 -12.74134 -12.69303 -12.50978 -12.17135 -11.98328 -11.92233 -11.87462 -11.67841 -11.42778 -11.20053 -11.06347 -10.96407 -10.71819 -10.57987 -10.35564 -10.24526 -9.55171 -9.25428 -9.00780 -8.60461 -8.45415 -8.31371 -6.09561 -4.12769 2.05509 3.31196 3.35345 3.38934 3.56306 3.61731 3.68014 4.23859 4.41805 4.50335 4.63727 4.80442 4.90763 5.01574 5.08464 5.13906 5.23331 5.28357 5.30403 5.37273 5.38920 5.49887 5.55055 5.58212 5.68293 5.71410 5.82327 5.84830 5.95371 6.01356 6.13641 6.24573 6.35092 6.38371 6.55042 6.71721 6.76795 6.88209 7.16320 7.42933 7.46801 7.53235 7.85284 8.23070 8.39833 8.91557 9.52608 11.01286 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.003157 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.765211 B = 8868.014643 C = 9247.060594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.116 3.884 3 H 0.047 0.953 4 N -0.683 5.683 5 C 0.067 3.933 6 C 0.007 3.993 7 H 0.111 0.889 8 C 0.242 3.758 9 N -0.478 5.478 10 C 0.033 3.967 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.104 4.104 20 C -0.166 4.166 21 C 0.087 3.913 22 N -0.538 5.538 23 C 0.023 3.977 24 C 0.049 3.951 25 C -0.074 4.074 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.338 0.662 30 H 0.034 0.966 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.110 0.890 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -4.014 21.714 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 H 0.065 0.935 4 N -0.315 5.315 5 C -0.063 4.063 6 C -0.015 4.015 7 H 0.129 0.871 8 C -0.075 4.075 9 N -0.155 5.155 10 C -0.006 4.006 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.105 4.105 20 C -0.185 4.185 21 C -0.041 4.041 22 N -0.263 5.263 23 C -0.126 4.126 24 C -0.079 4.079 25 C -0.111 4.111 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.623 -4.522 21.802 22.559 hybrid contribution 1.591 0.175 -1.028 1.903 sum -2.031 -4.347 20.774 21.321 Atomic orbital electron populations 1.21753 0.93739 1.02564 1.01225 1.20645 0.96340 0.94964 0.87357 0.93490 1.60701 1.33267 1.33454 1.04032 1.22137 1.01704 0.93390 0.89054 1.19332 0.83636 1.01528 0.96992 0.87103 1.29359 0.95151 0.91912 0.91076 1.81056 1.12605 1.10714 1.11116 1.19155 0.98879 0.93732 0.88800 1.21111 1.46759 0.96642 0.92000 0.92560 1.24954 0.95026 0.94873 0.99108 1.69931 1.48257 1.09893 1.24973 0.86652 0.79245 0.79910 0.82261 1.19994 1.21188 1.20287 1.21056 0.97888 0.96192 0.95365 1.22048 1.01227 0.99623 0.95617 1.20925 0.95783 0.90861 0.96507 1.62466 1.54810 1.03817 1.05168 1.22388 0.96973 0.99584 0.93629 1.22304 0.98668 0.96522 0.90411 1.20446 1.00025 0.92099 0.98558 0.91780 0.92870 0.92188 0.84339 0.94786 0.88980 0.94195 0.95811 0.92739 0.87222 0.93922 0.89922 0.91381 0.91207 0.95668 0.94470 0.90451 0.90013 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.28 37.16 0.34 -1.09 16 2 C 0.12 1.34 2.76 -68.86 -0.19 1.15 16 3 H 0.05 0.56 7.28 -51.93 -0.38 0.18 16 4 N -0.68 -8.99 5.75 -107.95 -0.62 -9.61 16 5 C 0.07 0.99 4.92 -3.82 -0.02 0.97 16 6 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 7 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 8 C 0.24 4.90 12.98 -20.74 -0.27 4.63 16 9 N -0.48 -10.46 18.54 42.18 0.78 -9.68 16 10 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 11 C -0.53 -14.06 8.60 -34.44 -0.30 -14.35 16 12 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 15 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.10 -1.14 4.58 -100.92 -0.46 -1.61 16 20 C -0.17 -1.75 9.53 -35.96 -0.34 -2.09 16 21 C 0.09 0.82 5.66 -5.27 -0.03 0.80 16 22 N -0.54 -5.20 4.97 -244.30 -1.21 -6.41 16 23 C 0.02 0.17 9.55 60.06 0.57 0.74 16 24 C 0.05 0.47 5.60 -3.51 -0.02 0.45 16 25 C -0.07 -0.76 5.52 -27.95 -0.15 -0.92 16 26 H 0.06 0.68 7.73 -51.93 -0.40 0.28 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 29 H 0.34 4.75 7.34 -39.29 -0.29 4.46 16 30 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 31 H 0.09 1.28 7.44 -51.93 -0.39 0.90 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.11 1.08 7.64 -52.48 -0.40 0.68 16 36 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 40 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 42 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 43 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 44 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -29.37 358.53 -8.89 -38.27 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.65 Total: -0.32 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.31 Total: -9.13 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.32 Total: -50.55 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.37 -8.89 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576510971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.228 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds