Wall clock time and date at job start Mon Mar 30 2020 01:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50695 * 120.00401 * 2 1 4 4 N 1.46901 * 109.47533 * 124.99625 * 3 2 1 5 5 C 1.46847 * 111.00376 * 169.99779 * 4 3 2 6 6 C 1.53038 * 109.52359 * 185.84161 * 5 4 3 7 7 C 1.53120 * 109.27781 * 300.82305 * 6 5 4 8 8 N 1.46900 * 109.52067 * 177.56150 * 7 6 5 9 9 C 1.46904 * 110.99779 * 155.12713 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 9.04198 * 135.27433 * 277.08201 * 3 1 2 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.53121 * 109.21213 * 57.62509 * 7 6 5 24 24 C 1.46846 * 111.00081 * 294.21719 * 4 3 2 25 25 H 1.08003 * 120.00106 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00566 * 180.02562 * 1 2 3 27 27 H 1.08009 * 119.99676 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47318 * 4.99682 * 3 2 1 29 29 H 1.09001 * 109.47511 * 245.00121 * 3 2 1 30 30 H 1.09004 * 109.45282 * 65.82614 * 5 4 3 31 31 H 1.09000 * 109.45502 * 305.85689 * 5 4 3 32 32 H 1.08999 * 109.49863 * 180.88690 * 6 5 4 33 33 H 1.09000 * 109.50112 * 60.76578 * 6 5 4 34 34 H 1.08999 * 109.52301 * 297.68822 * 7 6 5 35 35 H 1.00899 * 110.99585 * 279.07944 * 8 7 6 36 36 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 37 37 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 38 38 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 39 39 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 40 40 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 41 41 H 1.08990 * 109.50361 * 62.31467 * 23 7 6 42 42 H 1.09002 * 109.49990 * 182.43649 * 23 7 6 43 43 H 1.09002 * 109.45977 * 294.17020 * 24 4 3 44 44 H 1.08995 * 109.46701 * 54.14683 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 3.9123 2.4754 1.0358 6 6 4.9584 2.3904 2.1495 7 6 4.2520 2.3943 3.5080 8 7 5.2473 2.2541 4.5793 9 6 4.7489 2.8231 5.8386 10 6 5.8103 2.6581 6.9281 11 1 6.0903 1.6077 7.0066 12 6 6.9970 3.4576 6.5821 13 7 7.9123 4.0757 6.3144 14 6 5.2456 3.1369 8.2670 15 6 6.2448 2.8613 9.3610 16 1 7.1885 2.3921 9.1249 17 6 5.9568 3.2140 10.6625 18 7 6.8311 2.9784 11.6164 19 14 4.3249 4.0261 11.0708 20 1 3.3195 2.9820 11.3934 21 1 4.4982 4.9246 12.2405 22 1 3.8599 4.8173 9.9034 23 6 3.2677 1.2228 3.5674 24 6 2.2715 1.3409 2.4116 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 3.3480 3.4024 1.1374 31 1 4.4112 2.4582 0.0668 32 1 5.6286 3.2476 2.0855 33 1 5.5322 1.4701 2.0404 34 1 3.7105 3.3318 3.6343 35 1 5.5153 1.2888 4.6997 36 1 3.8385 2.3033 6.1371 37 1 4.5331 3.8823 5.6985 38 1 4.3176 2.6063 8.4805 39 1 5.0485 4.2076 8.2162 40 1 6.6283 3.2262 12.5320 41 1 3.8141 0.2837 3.4812 42 1 2.7308 1.2465 4.5158 43 1 1.7150 2.2733 2.5069 44 1 1.5788 0.4999 2.4421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580709623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:44 Heat of formation + Delta-G solvation = 36.953837 kcal Electronic energy + Delta-G solvation = -21031.306101 eV Core-core repulsion = 17983.416044 eV Total energy + Delta-G solvation = -3047.890057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.60872 -37.40871 -35.87265 -34.27275 -33.40454 -32.05889 -31.01285 -30.31502 -27.18156 -25.55815 -23.45438 -22.97701 -22.07340 -21.38977 -20.17324 -19.92583 -17.12741 -16.85102 -16.46892 -15.66698 -15.15892 -15.07236 -14.73741 -14.40211 -14.29168 -14.00153 -13.51326 -13.42015 -13.15054 -12.84782 -12.52779 -12.43473 -12.15853 -12.11883 -11.96406 -11.60506 -11.42389 -11.32571 -11.22467 -11.16556 -10.78516 -10.75192 -10.63292 -10.40365 -9.92436 -9.77661 -9.71199 -9.32399 -8.63420 -8.62055 -8.29993 -6.10853 -4.11421 1.87858 3.25078 3.34181 3.35031 3.65485 3.71332 3.80016 4.13172 4.37878 4.52098 4.61504 4.69119 4.79126 4.80770 4.96287 5.02741 5.12061 5.19339 5.23949 5.30162 5.35702 5.43310 5.45853 5.49179 5.58961 5.61863 5.63388 5.78163 5.84772 5.94692 6.07567 6.16250 6.24886 6.26307 6.30046 6.31325 6.79710 6.83230 6.91706 7.07098 7.12783 7.46165 7.63736 8.40635 8.56551 8.93077 9.48997 11.02318 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026190 B = 0.003145 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.856532 B = 8901.351544 C = 9646.219833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 C 0.079 3.921 4 N -0.535 5.535 5 C 0.056 3.944 6 C -0.103 4.103 7 C 0.088 3.912 8 N -0.687 5.687 9 C 0.064 3.936 10 C 0.020 3.980 11 H 0.104 0.896 12 C 0.252 3.748 13 N -0.471 5.471 14 C -0.005 4.005 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.147 4.147 24 C 0.061 3.939 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.344 0.656 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.025 0.975 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 -5.233 -22.750 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.160 4.160 3 C -0.048 4.048 4 N -0.260 5.260 5 C -0.072 4.072 6 C -0.142 4.142 7 C -0.022 4.022 8 N -0.317 5.317 9 C -0.066 4.066 10 C -0.002 4.002 11 H 0.122 0.878 12 C -0.065 4.065 13 N -0.148 5.148 14 C -0.044 4.044 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.186 4.186 24 C -0.067 4.067 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.132 0.868 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.163 0.837 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.053 -4.111 -23.134 26.407 hybrid contribution -2.328 0.187 0.883 2.497 sum -14.381 -3.924 -22.251 26.783 Atomic orbital electron populations 1.23875 0.95943 1.01876 1.01575 1.22899 0.95484 0.98683 0.98917 1.21228 0.94277 0.94716 0.94592 1.61923 1.19147 1.43138 1.01807 1.22122 0.94363 0.90943 0.99753 1.21549 0.97131 1.03226 0.92270 1.21600 0.91234 0.97556 0.91842 1.60580 1.40594 1.24436 1.06048 1.22116 0.95829 1.00615 0.88026 1.18949 0.86927 0.98261 0.96093 0.87788 1.28718 0.93824 0.93134 0.90800 1.81016 1.11666 1.10684 1.11421 1.19631 0.97231 0.97111 0.90410 1.21038 1.03531 1.41072 0.90905 0.90765 1.24998 0.96767 0.95057 0.96326 1.69906 1.35190 1.47467 1.00946 0.86818 0.84393 0.79971 0.78373 1.20062 1.21314 1.18872 1.22353 0.98282 1.00324 0.97663 1.22015 0.95493 1.00461 0.88768 0.88837 0.88285 0.86776 0.94542 0.89936 0.94973 0.90630 0.90773 0.90924 0.90888 0.83749 0.93363 0.90646 0.94994 0.95697 0.92566 0.90713 0.91280 0.95069 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 14.32 29.02 0.42 -0.83 16 2 C -0.14 -1.01 8.52 -36.03 -0.31 -1.31 16 3 C 0.08 0.59 5.41 -4.98 -0.03 0.56 16 4 N -0.54 -4.66 4.65 -236.11 -1.10 -5.76 16 5 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 6 C -0.10 -1.01 5.71 -26.65 -0.15 -1.16 16 7 C 0.09 0.91 2.53 -67.59 -0.17 0.74 16 8 N -0.69 -8.34 5.95 -106.60 -0.63 -8.97 16 9 C 0.06 0.87 4.85 -3.82 -0.02 0.85 16 10 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 11 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 12 C 0.25 5.23 13.67 -20.74 -0.28 4.95 16 13 N -0.47 -10.79 18.54 42.17 0.78 -10.01 16 14 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 15 C -0.53 -14.22 9.15 -34.44 -0.32 -14.53 16 16 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 19 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 23 C -0.15 -1.35 5.35 -26.65 -0.14 -1.49 16 24 C 0.06 0.53 5.31 -3.83 -0.02 0.51 16 25 H 0.09 0.56 7.84 -52.48 -0.41 0.15 16 26 H 0.10 0.55 8.06 -52.48 -0.42 0.12 16 27 H 0.11 0.82 8.06 -52.48 -0.42 0.40 16 28 H 0.04 0.27 7.78 -51.93 -0.40 -0.13 16 29 H 0.08 0.56 7.99 -51.93 -0.41 0.14 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.58 8.02 -51.93 -0.42 0.17 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.80 7.80 -51.93 -0.41 0.39 16 35 H 0.34 3.86 8.45 -39.29 -0.33 3.53 16 36 H 0.05 0.58 7.50 -51.93 -0.39 0.19 16 37 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 38 H 0.03 0.63 7.58 -51.93 -0.39 0.24 16 39 H 0.02 0.54 7.19 -51.93 -0.37 0.17 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 43 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.65 7.10 -51.93 -0.37 0.28 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -30.95 356.80 -8.60 -39.56 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.68 Total: -0.37 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.46 Total: -9.44 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.18 Total: -51.10 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.95 -8.60 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580709623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.509 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds