Wall clock time and date at job start Mon Mar 30 2020 01:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50695 * 120.00401 * 2 1 4 4 N 1.46901 * 109.47533 * 124.99625 * 3 2 1 5 5 C 1.46847 * 111.00376 * 169.99779 * 4 3 2 6 6 C 1.53038 * 109.52359 * 185.84161 * 5 4 3 7 7 C 1.53120 * 109.27781 * 300.82305 * 6 5 4 8 8 N 1.46900 * 109.52067 * 177.56150 * 7 6 5 9 9 C 1.46904 * 110.99779 * 155.12713 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 9.04198 * 135.27433 * 277.08201 * 3 1 2 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.53121 * 109.21213 * 57.62509 * 7 6 5 24 24 C 1.46846 * 111.00081 * 294.21719 * 4 3 2 25 25 H 1.08003 * 120.00106 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00566 * 180.02562 * 1 2 3 27 27 H 1.08009 * 119.99676 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47318 * 4.99682 * 3 2 1 29 29 H 1.09001 * 109.47511 * 245.00121 * 3 2 1 30 30 H 1.09004 * 109.45282 * 65.82614 * 5 4 3 31 31 H 1.09000 * 109.45502 * 305.85689 * 5 4 3 32 32 H 1.08999 * 109.49863 * 180.88690 * 6 5 4 33 33 H 1.09000 * 109.50112 * 60.76578 * 6 5 4 34 34 H 1.08999 * 109.52301 * 297.68822 * 7 6 5 35 35 H 1.00899 * 110.99585 * 279.07944 * 8 7 6 36 36 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 37 37 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 38 38 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 39 39 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 40 40 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 41 41 H 1.08990 * 109.50361 * 62.31467 * 23 7 6 42 42 H 1.09002 * 109.49990 * 182.43649 * 23 7 6 43 43 H 1.09002 * 109.45977 * 294.17020 * 24 4 3 44 44 H 1.08995 * 109.46701 * 54.14683 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 3.9123 2.4754 1.0358 6 6 4.9584 2.3904 2.1495 7 6 4.2520 2.3943 3.5080 8 7 5.2473 2.2541 4.5793 9 6 4.7489 2.8231 5.8386 10 6 5.8103 2.6581 6.9281 11 1 6.0903 1.6077 7.0066 12 6 6.9970 3.4576 6.5821 13 7 7.9123 4.0757 6.3144 14 6 5.2456 3.1369 8.2670 15 6 6.2448 2.8613 9.3610 16 1 7.1885 2.3921 9.1249 17 6 5.9568 3.2140 10.6625 18 7 6.8311 2.9784 11.6164 19 14 4.3249 4.0261 11.0708 20 1 3.3195 2.9820 11.3934 21 1 4.4982 4.9246 12.2405 22 1 3.8599 4.8173 9.9034 23 6 3.2677 1.2228 3.5674 24 6 2.2715 1.3409 2.4116 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 3.3480 3.4024 1.1374 31 1 4.4112 2.4582 0.0668 32 1 5.6286 3.2476 2.0855 33 1 5.5322 1.4701 2.0404 34 1 3.7105 3.3318 3.6343 35 1 5.5153 1.2888 4.6997 36 1 3.8385 2.3033 6.1371 37 1 4.5331 3.8823 5.6985 38 1 4.3176 2.6063 8.4805 39 1 5.0485 4.2076 8.2162 40 1 6.6283 3.2262 12.5320 41 1 3.8141 0.2837 3.4812 42 1 2.7308 1.2465 4.5158 43 1 1.7150 2.2733 2.5069 44 1 1.5788 0.4999 2.4421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580709623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:43 Heat of formation + Delta-G solvation = 16.299428 kcal Electronic energy + Delta-G solvation = -21032.201743 eV Core-core repulsion = 17983.416044 eV Total energy + Delta-G solvation = -3048.785700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34840 -38.65785 -36.98746 -35.61679 -34.77716 -33.55141 -31.71450 -31.41481 -28.62379 -26.43742 -24.37158 -23.93580 -23.28630 -22.79464 -20.85647 -20.53823 -18.89826 -18.45309 -17.24306 -16.53968 -16.29080 -15.93132 -15.78511 -15.48780 -15.22248 -15.06573 -14.96368 -14.43774 -14.29356 -13.92873 -13.87087 -13.72470 -13.36570 -13.21768 -13.12505 -12.95419 -12.56054 -12.39056 -12.29307 -12.10819 -12.05636 -11.88858 -11.66931 -11.64416 -11.47282 -11.33991 -11.10293 -10.72586 -10.28066 -9.28801 -9.19485 -8.24262 -6.29797 1.37514 1.42320 1.45780 1.55849 2.07047 2.14223 2.41376 3.02660 3.11629 3.18064 3.34864 3.87007 3.91521 4.05793 4.17191 4.22316 4.24198 4.35415 4.37823 4.49081 4.59970 4.62696 4.66354 4.71172 4.76335 4.80995 4.81777 4.95206 4.98092 5.07077 5.09819 5.16133 5.24614 5.32045 5.40717 5.46669 5.64613 5.74943 5.78012 6.13995 6.16700 6.21390 6.27756 6.56795 6.78072 6.92529 7.34659 8.92798 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026190 B = 0.003145 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.856532 B = 8901.351544 C = 9646.219833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C 0.080 3.920 4 N -0.544 5.544 5 C 0.060 3.940 6 C -0.099 4.099 7 C 0.092 3.908 8 N -0.698 5.698 9 C 0.077 3.923 10 C 0.025 3.975 11 H 0.116 0.884 12 C 0.263 3.737 13 N -0.517 5.517 14 C -0.003 4.003 15 C -0.531 4.531 16 H 0.029 0.971 17 C 0.002 3.998 18 N -0.955 5.955 19 Si 0.949 3.051 20 H -0.256 1.256 21 H -0.296 1.296 22 H -0.238 1.238 23 C -0.139 4.139 24 C 0.064 3.936 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.349 0.651 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.030 0.970 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.223 -5.331 -24.085 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.171 4.171 3 C -0.047 4.047 4 N -0.268 5.268 5 C -0.068 4.068 6 C -0.138 4.138 7 C -0.018 4.018 8 N -0.329 5.329 9 C -0.053 4.053 10 C 0.003 3.997 11 H 0.134 0.866 12 C -0.054 4.054 13 N -0.195 5.195 14 C -0.042 4.042 15 C -0.569 4.569 16 H 0.047 0.953 17 C -0.195 4.195 18 N -0.596 5.596 19 Si 0.772 3.228 20 H -0.180 1.180 21 H -0.223 1.223 22 H -0.161 1.161 23 C -0.179 4.179 24 C -0.065 4.065 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.159 -4.223 -24.511 29.128 hybrid contribution -1.274 0.157 1.255 1.795 sum -16.433 -4.066 -23.256 28.765 Atomic orbital electron populations 1.24007 0.95758 1.02528 1.00373 1.22880 0.95763 0.98405 1.00034 1.21248 0.94179 0.94959 0.94322 1.61925 1.19587 1.43099 1.02228 1.22071 0.94092 0.91021 0.99594 1.21483 0.97273 1.02345 0.92670 1.21581 0.91034 0.97975 0.91198 1.60520 1.41556 1.24960 1.05875 1.21949 0.94937 1.01143 0.87264 1.19070 0.86666 0.98041 0.95923 0.86602 1.29471 0.93869 0.92437 0.89582 1.81012 1.13149 1.12264 1.13043 1.19581 0.96858 0.97590 0.90139 1.21417 1.03067 1.39646 0.92744 0.95313 1.26059 1.01205 0.96007 0.96221 1.70092 1.38112 1.49837 1.01514 0.85676 0.79321 0.79276 0.78513 1.18049 1.22282 1.16082 1.22270 0.97971 0.99451 0.98174 1.21982 0.95342 1.00511 0.88645 0.88408 0.87435 0.87091 0.94396 0.89429 0.94900 0.89839 0.91857 0.91606 0.91112 0.83130 0.90639 0.90794 0.91895 0.95623 0.92676 0.91039 0.90680 0.95132 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 14.32 67.79 0.97 -1.06 16 2 C -0.15 -1.90 8.52 25.65 0.22 -1.69 16 3 C 0.08 1.04 5.41 85.56 0.46 1.51 16 4 N -0.54 -8.43 4.65 -900.92 -4.19 -12.61 16 5 C 0.06 0.93 5.46 86.33 0.47 1.40 16 6 C -0.10 -1.81 5.71 30.65 0.17 -1.63 16 7 C 0.09 1.69 2.53 45.00 0.11 1.81 16 8 N -0.70 -15.44 5.95 -491.16 -2.92 -18.37 16 9 C 0.08 1.85 4.85 86.30 0.42 2.27 16 10 C 0.02 0.82 2.35 -12.60 -0.03 0.79 16 11 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 12 C 0.26 10.80 13.67 89.44 1.22 12.02 16 13 N -0.52 -23.92 18.54 20.01 0.37 -23.55 16 14 C 0.00 -0.11 3.49 29.85 0.10 0.00 16 15 C -0.53 -28.68 9.15 25.60 0.23 -28.45 16 16 H 0.03 1.76 7.84 -2.91 -0.02 1.74 16 17 C 0.00 0.09 5.47 84.66 0.46 0.55 16 18 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 19 Si 0.95 41.45 27.47 68.60 1.88 43.34 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.30 -13.30 7.11 99.48 0.71 -12.60 16 22 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 23 C -0.14 -2.19 5.35 30.65 0.16 -2.03 16 24 C 0.06 0.97 5.31 86.33 0.46 1.42 16 25 H 0.10 0.96 7.84 -2.91 -0.02 0.94 16 26 H 0.11 0.96 8.06 -2.91 -0.02 0.93 16 27 H 0.11 1.45 8.06 -2.91 -0.02 1.42 16 28 H 0.04 0.49 7.78 -2.39 -0.02 0.47 16 29 H 0.09 1.03 7.99 -2.39 -0.02 1.01 16 30 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.08 1.15 8.02 -2.39 -0.02 1.13 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.36 7.80 -2.39 -0.02 1.34 16 35 H 0.35 7.09 8.45 -89.69 -0.76 6.33 16 36 H 0.08 1.45 7.50 -2.39 -0.02 1.43 16 37 H 0.07 1.84 8.05 -2.39 -0.02 1.82 16 38 H 0.06 2.20 7.58 -2.38 -0.02 2.18 16 39 H 0.03 1.04 7.19 -2.39 -0.02 1.02 16 40 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.07 1.19 8.10 -2.39 -0.02 1.17 16 42 H 0.07 1.11 7.53 -2.39 -0.02 1.09 16 43 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.08 1.16 7.10 -2.39 -0.02 1.14 16 Total: -1.00 -68.38 356.80 1.03 -67.35 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.14 Total: 15.95 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 5.45 Total: -13.08 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -6.44 Total: -113.56 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.88 Total: 43.34 kcal Total: -68.38 1.03 -67.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580709623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.649 kcal (2) G-P(sol) polarization free energy of solvation -68.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds