Wall clock time and date at job start Mon Mar 30 2020 01:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.37010 * 2 1 4 4 C 1.54380 * 110.32699 * 237.81867 * 2 1 3 5 5 N 1.48553 * 104.59591 * 217.24925 * 4 2 1 6 6 C 1.46902 * 111.00428 * 159.03937 * 5 4 2 7 7 C 1.53009 * 117.49292 * 3.87107 * 6 5 4 8 8 C 1.53005 * 117.49385 * 295.21755 * 6 5 4 9 9 C 1.48563 * 104.22166 * 39.48231 * 5 4 2 10 10 C 1.54259 * 110.32369 * 122.17857 * 2 1 3 11 11 H 1.08999 * 110.32602 * 237.89413 * 10 2 1 12 12 N 1.46892 * 110.32563 * 0.02562 * 10 2 1 13 13 C 1.46897 * 111.00133 * 195.83993 * 12 10 2 14 14 C 1.53001 * 109.46945 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.47915 * 55.00036 * 14 13 12 16 16 C 1.47201 * 109.47067 * 294.99814 * 14 13 12 17 17 N 5.49071 * 56.81990 * 93.33479 * 2 1 3 18 18 C 1.53005 * 109.47071 * 175.00265 * 14 13 12 19 19 C 1.50698 * 109.47233 * 184.99780 * 18 14 13 20 20 H 1.08003 * 119.99996 * 0.02562 * 19 18 14 21 21 C 1.37874 * 120.00010 * 179.97438 * 19 18 14 22 22 N 1.31516 * 120.00046 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46998 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47073 * 120.00099 * 23 21 19 26 26 H 1.48500 * 109.47360 * 240.00376 * 23 21 19 27 27 H 1.08994 * 109.47216 * 304.08928 * 1 2 3 28 28 H 1.09002 * 109.47093 * 64.08943 * 1 2 3 29 29 H 1.08998 * 109.46530 * 184.08806 * 1 2 3 30 30 H 1.08995 * 110.40899 * 336.03059 * 4 2 1 31 31 H 1.09003 * 110.41068 * 98.47205 * 4 2 1 32 32 H 1.08990 * 115.55278 * 149.54305 * 6 5 4 33 33 H 1.09000 * 117.50031 * 0.02562 * 7 6 5 34 34 H 1.09002 * 117.49494 * 145.02098 * 7 6 5 35 35 H 1.08998 * 117.49445 * 214.97447 * 8 6 5 36 36 H 1.08994 * 117.50056 * 359.97438 * 8 6 5 37 37 H 1.09005 * 110.41290 * 201.73481 * 9 5 4 38 38 H 1.08999 * 110.41395 * 79.29468 * 9 5 4 39 39 H 1.00901 * 110.99926 * 319.79624 * 12 10 2 40 40 H 1.09006 * 109.47273 * 299.99512 * 13 12 10 41 41 H 1.08994 * 109.47225 * 60.00428 * 13 12 10 42 42 H 1.09006 * 109.46746 * 304.99332 * 18 14 13 43 43 H 1.08999 * 109.47109 * 64.99551 * 18 14 13 44 44 H 0.97000 * 120.00010 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0663 -0.7710 -1.2253 5 7 3.2694 -1.4827 -0.7225 6 6 3.6070 -2.6216 -1.5868 7 6 2.7674 -2.8230 -2.8500 8 6 2.6028 -3.7736 -1.6616 9 6 2.8807 -1.9421 0.6358 10 6 2.0658 -0.7704 1.2244 11 1 2.7067 -0.1262 1.8263 12 7 0.9513 -1.2805 2.0339 13 6 1.4111 -1.6794 3.3708 14 6 0.2252 -2.2047 4.1823 15 1 -0.2633 -3.0093 3.6328 16 6 -0.7352 -1.1128 4.4106 17 7 -1.4749 -0.2673 4.5877 18 6 0.7233 -2.7355 5.5282 19 6 -0.4242 -3.3638 6.2762 20 1 -1.4101 -3.3830 5.8355 21 6 -0.2153 -3.9150 7.5225 22 7 0.9853 -3.8920 8.0589 23 14 -1.6379 -4.6932 8.4501 24 1 -2.8753 -4.5903 7.6354 25 1 -1.3353 -6.1234 8.7113 26 1 -1.8340 -3.9850 9.7405 27 1 -0.3633 0.5760 0.8510 28 1 -0.3633 0.4491 -0.9244 29 1 -0.3632 -1.0251 0.0733 30 1 1.3230 -1.4848 -1.5803 31 1 2.3395 -0.0778 -2.0209 32 1 4.6662 -2.8729 -1.6410 33 1 1.9650 -2.1102 -3.0399 34 1 3.2744 -3.2070 -3.7352 35 1 3.0015 -4.7827 -1.7655 36 1 1.6921 -3.6866 -1.0692 37 1 3.7671 -2.1307 1.2415 38 1 2.2649 -2.8392 0.5721 39 1 0.2080 -0.6009 2.0951 40 1 2.1628 -2.4634 3.2776 41 1 1.8455 -0.8179 3.8777 42 1 1.4993 -3.4822 5.3595 43 1 1.1321 -1.9126 6.1145 44 1 1.1323 -4.2802 8.9356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582780718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:00 Heat of formation + Delta-G solvation = 57.972229 kcal Electronic energy + Delta-G solvation = -21629.512226 eV Core-core repulsion = 18582.533595 eV Total energy + Delta-G solvation = -3046.978631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25569 -37.66460 -36.34779 -34.33121 -33.25529 -31.97421 -31.14270 -28.04640 -26.26246 -25.98717 -23.31638 -22.52907 -22.34504 -21.81914 -19.96870 -19.28407 -16.93011 -16.82822 -16.55151 -16.12338 -15.58539 -15.22634 -14.68163 -14.44370 -13.78291 -13.42053 -13.27626 -12.95567 -12.83348 -12.67515 -12.46420 -12.24450 -12.06026 -11.86988 -11.66197 -11.59832 -11.36479 -11.13729 -10.98973 -10.86112 -10.80390 -10.72461 -10.66335 -10.49195 -10.32504 -10.22434 -9.55571 -9.22312 -8.59577 -8.47030 -8.35202 -6.10618 -4.13750 3.27623 3.35909 3.40339 3.45924 3.53588 3.58994 3.77225 4.32987 4.38741 4.43480 4.46007 4.64535 4.70977 4.77699 4.78655 4.92233 5.22485 5.27495 5.33994 5.39687 5.42880 5.45662 5.52583 5.61235 5.62874 5.70402 5.75930 5.81992 5.85478 5.94515 5.99926 6.02259 6.14016 6.22164 6.34104 6.52108 6.61440 6.86697 7.13725 7.40973 7.43850 7.52077 7.84553 8.22013 8.37550 8.91060 9.51862 11.00280 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023562 B = 0.003630 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.054552 B = 7711.572818 C = 8310.796608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.077 0.923 4 C 0.034 3.966 5 N -0.481 5.481 6 C 0.012 3.988 7 C -0.191 4.191 8 C -0.209 4.209 9 C 0.040 3.960 10 C 0.084 3.916 11 H 0.053 0.947 12 N -0.686 5.686 13 C 0.065 3.935 14 C 0.007 3.993 15 H 0.110 0.890 16 C 0.241 3.759 17 N -0.477 5.477 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.284 1.284 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.343 0.657 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.040 0.960 43 H 0.024 0.976 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 3.167 -20.514 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.096 0.904 4 C -0.093 4.093 5 N -0.204 5.204 6 C -0.097 4.097 7 C -0.229 4.229 8 C -0.248 4.248 9 C -0.088 4.088 10 C -0.027 4.027 11 H 0.071 0.929 12 N -0.321 5.321 13 C -0.065 4.065 14 C -0.015 4.015 15 H 0.128 0.872 16 C -0.076 4.076 17 N -0.154 5.154 18 C -0.006 4.006 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.210 1.210 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.165 0.835 40 H 0.109 0.891 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.042 0.958 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.156 4.118 -20.329 21.373 hybrid contribution -0.986 -0.535 1.016 1.513 sum 4.170 3.584 -19.313 20.081 Atomic orbital electron populations 1.21772 0.94199 1.03172 1.01209 1.22009 0.96221 0.99221 0.94147 0.90419 1.23285 0.91634 0.97168 0.97257 1.65456 1.32918 1.20044 1.01978 1.23016 0.97233 0.92371 0.97096 1.23388 1.03348 1.03322 0.92796 1.23422 1.02830 0.96272 1.02265 1.23243 0.98786 0.97488 0.89261 1.22211 0.92072 0.94571 0.93848 0.92859 1.60842 1.10535 1.45988 1.14727 1.22129 0.97007 1.00212 0.87144 1.19331 0.90363 0.90888 1.00892 0.87215 1.29398 0.93420 0.93502 0.91253 1.81089 1.11001 1.12597 1.10733 1.19168 0.97240 0.96695 0.87539 1.21182 0.95165 1.37849 1.02204 0.92468 1.24954 0.95655 0.95940 0.97434 1.69948 1.20788 1.45250 1.16999 0.86544 0.82687 0.79014 0.79885 1.19681 1.20814 1.20999 0.92596 0.92782 0.90811 0.92682 0.90351 0.85783 0.88080 0.88528 0.88416 0.88216 0.90154 0.91381 0.83521 0.89116 0.94617 0.94197 0.95750 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 7.81 37.16 0.29 -1.14 16 2 C -0.10 -0.97 3.65 -89.24 -0.33 -1.29 16 3 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 4 C 0.03 0.33 4.78 -2.19 -0.01 0.32 16 5 N -0.48 -5.02 5.65 -222.02 -1.25 -6.28 16 6 C 0.01 0.11 6.48 -67.70 -0.44 -0.33 16 7 C -0.19 -1.52 9.51 -26.69 -0.25 -1.78 16 8 C -0.21 -1.84 9.08 -26.69 -0.24 -2.08 16 9 C 0.04 0.44 5.71 -2.18 -0.01 0.43 16 10 C 0.08 0.95 3.34 -66.34 -0.22 0.73 16 11 H 0.05 0.64 7.96 -51.93 -0.41 0.23 16 12 N -0.69 -8.75 5.32 -105.27 -0.56 -9.31 16 13 C 0.07 0.95 4.96 -3.83 -0.02 0.93 16 14 C 0.01 0.13 2.42 -93.40 -0.23 -0.10 16 15 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 16 C 0.24 4.81 12.98 -20.72 -0.27 4.54 16 17 N -0.48 -10.27 18.55 42.20 0.78 -9.49 16 18 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 19 C -0.53 -13.94 8.60 -34.44 -0.30 -14.24 16 20 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 23 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.06 0.59 7.06 -51.93 -0.37 0.22 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 30 H 0.06 0.52 5.45 -51.93 -0.28 0.24 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.10 0.80 5.82 -51.93 -0.30 0.50 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.99 6.82 -51.93 -0.35 0.64 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.80 6.06 -51.93 -0.31 0.49 16 39 H 0.34 4.56 5.25 -39.29 -0.21 4.36 16 40 H 0.09 1.25 7.87 -51.93 -0.41 0.84 16 41 H 0.04 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -28.76 348.11 -9.54 -38.30 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.22 Total: 1.78 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.25 Total: -11.77 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.30 Total: -49.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.76 -9.54 -38.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582780718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.272 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds