Wall clock time and date at job start Mon Mar 30 2020 01:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 110.90608 * 2 1 4 4 C 1.55111 * 111.14876 * 236.10414 * 2 1 3 5 5 N 1.47856 * 104.90454 * 205.05192 * 4 2 1 6 6 C 1.46900 * 110.99630 * 146.24245 * 5 4 2 7 7 C 1.53002 * 117.49884 * 122.77883 * 6 5 4 8 8 C 1.52996 * 59.99984 * 252.50433 * 7 6 5 9 9 C 1.47443 * 108.56508 * 23.97332 * 5 4 2 10 10 C 1.54316 * 107.23629 * 359.00772 * 9 5 4 11 11 H 1.09005 * 110.70024 * 96.27451 * 10 9 5 12 12 N 1.46893 * 110.70568 * 219.33358 * 10 9 5 13 13 C 1.46896 * 111.00219 * 271.19691 * 12 10 9 14 14 C 1.53003 * 109.47068 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.47372 * 54.99946 * 14 13 12 16 16 C 1.47201 * 109.46882 * 294.99552 * 14 13 12 17 17 N 5.87409 * 122.70535 * 74.26707 * 2 1 3 18 18 C 1.52998 * 109.47069 * 175.00111 * 14 13 12 19 19 C 1.50696 * 109.47188 * 185.00074 * 18 14 13 20 20 H 1.07995 * 120.00332 * 359.97438 * 19 18 14 21 21 C 1.37880 * 119.99983 * 180.02562 * 19 18 14 22 22 N 1.31517 * 120.00210 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99914 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99403 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00010 * 23 21 19 27 27 H 1.09000 * 109.47669 * 296.13886 * 1 2 3 28 28 H 1.08995 * 109.47201 * 56.14007 * 1 2 3 29 29 H 1.08999 * 109.47415 * 176.13794 * 1 2 3 30 30 H 1.08994 * 110.42569 * 86.13289 * 4 2 1 31 31 H 1.09001 * 110.30811 * 323.90734 * 4 2 1 32 32 H 1.08999 * 115.54575 * 268.47857 * 6 5 4 33 33 H 1.08999 * 117.49373 * 359.97438 * 7 6 5 34 34 H 1.09001 * 117.50008 * 145.01382 * 7 6 5 35 35 H 1.08993 * 117.50035 * 252.51115 * 8 7 6 36 36 H 1.09002 * 117.51737 * 107.48024 * 8 7 6 37 37 H 1.09003 * 109.87977 * 239.60178 * 9 5 4 38 38 H 1.08999 * 110.02215 * 118.49761 * 9 5 4 39 39 H 1.00900 * 111.00334 * 35.15739 * 12 10 9 40 40 H 1.08993 * 109.47105 * 59.99881 * 13 12 10 41 41 H 1.09010 * 109.47042 * 300.00077 * 13 12 10 42 42 H 1.09004 * 109.47223 * 64.99414 * 18 14 13 43 43 H 1.09010 * 109.47071 * 304.99766 * 18 14 13 44 44 H 0.97000 * 119.99462 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9189 1.0182 0.0000 4 6 2.0895 -0.8068 -1.2008 5 7 3.4340 -1.2463 -0.7701 6 6 3.7614 -2.5643 -1.3303 7 6 5.0295 -2.6760 -2.1790 8 6 3.6543 -2.7338 -2.8471 9 6 3.4688 -1.2750 0.7036 10 6 2.0857 -0.8070 1.2029 11 1 1.4457 -1.6618 1.4221 12 7 2.2241 0.0528 2.3858 13 6 2.2218 -0.7447 3.6195 14 6 2.3668 0.1836 4.8271 15 1 1.5846 0.9420 4.7984 16 6 3.6854 0.8368 4.7881 17 7 4.7038 1.3403 4.7576 18 6 2.2396 -0.6319 6.1153 19 6 2.2594 0.2969 7.3018 20 1 2.3537 1.3623 7.1521 21 6 2.1581 -0.2135 8.5787 22 7 2.0437 -1.5109 8.7611 23 14 2.1833 0.9379 10.0495 24 1 3.5840 1.1292 10.5043 25 1 1.6055 2.2496 9.6613 26 1 1.3808 0.3501 11.1520 27 1 -0.3634 0.4527 0.9225 28 1 -0.3633 0.5725 -0.8533 29 1 -0.3634 -1.0253 -0.0692 30 1 2.1625 -0.1726 -2.0842 31 1 1.4556 -1.6696 -1.4052 32 1 3.4948 -3.4188 -0.7083 33 1 5.6206 -1.7714 -2.3220 34 1 5.5976 -3.6041 -2.1154 35 1 3.3176 -3.6998 -3.2230 36 1 3.3405 -1.8674 -3.4294 37 1 4.2429 -0.6002 1.0693 38 1 3.6657 -2.2886 1.0526 39 1 3.0553 0.6214 2.3243 40 1 3.0544 -1.4478 3.5991 41 1 1.2836 -1.2946 3.6949 42 1 3.0732 -1.3307 6.1869 43 1 1.3010 -1.1861 6.1034 44 1 2.0303 -2.1087 7.9973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582780719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:02 Heat of formation + Delta-G solvation = 39.956619 kcal Electronic energy + Delta-G solvation = -21282.906270 eV Core-core repulsion = 18235.146423 eV Total energy + Delta-G solvation = -3047.759847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.90416 -37.59050 -36.50472 -34.58168 -33.62882 -32.09161 -31.33906 -27.97103 -26.25534 -25.33175 -22.95248 -22.61856 -22.22033 -21.90345 -20.50401 -20.25206 -17.13630 -16.82813 -16.61724 -16.08556 -15.69909 -14.98410 -14.34503 -13.91867 -13.68072 -13.61691 -13.46061 -13.20857 -13.03353 -12.87916 -12.66549 -12.36071 -12.17250 -12.04229 -11.84885 -11.78977 -11.42425 -11.24618 -11.11850 -11.00065 -10.90835 -10.68145 -10.60845 -10.40575 -10.37799 -10.16282 -9.91444 -8.68350 -8.65186 -8.41934 -8.30180 -6.44743 -4.15857 3.42900 3.43728 3.44252 3.48221 3.52453 3.59669 3.61111 4.06414 4.44218 4.47785 4.51131 4.63456 4.67896 4.74835 4.82253 4.98571 5.06711 5.20200 5.23599 5.33773 5.35076 5.37297 5.43002 5.49977 5.55562 5.59266 5.65780 5.69338 5.77731 5.86474 5.89811 6.00371 6.07814 6.15786 6.26065 6.37258 6.66648 6.87119 7.00578 7.07943 7.22552 7.33090 8.01797 8.27887 8.38600 8.77999 9.55258 10.96098 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.003207 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.908635 B = 8730.069996 C = 8994.188858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.087 0.913 4 C 0.048 3.952 5 N -0.500 5.500 6 C 0.000 4.000 7 C -0.164 4.164 8 C -0.177 4.177 9 C 0.017 3.983 10 C 0.072 3.928 11 H 0.087 0.913 12 N -0.677 5.677 13 C 0.066 3.934 14 C 0.015 3.985 15 H 0.112 0.888 16 C 0.239 3.761 17 N -0.471 5.471 18 C 0.019 3.981 19 C -0.606 4.606 20 H 0.051 0.949 21 C 0.020 3.980 22 N -0.909 5.909 23 Si 1.068 2.932 24 H -0.288 1.288 25 H -0.287 1.287 26 H -0.283 1.283 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.342 0.658 40 H 0.034 0.966 41 H 0.090 0.910 42 H 0.014 0.986 43 H 0.030 0.970 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -2.762 -22.314 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.105 0.895 4 C -0.080 4.080 5 N -0.224 5.224 6 C -0.109 4.109 7 C -0.202 4.202 8 C -0.215 4.215 9 C -0.113 4.113 10 C -0.040 4.040 11 H 0.105 0.895 12 N -0.307 5.307 13 C -0.064 4.064 14 C -0.007 4.007 15 H 0.130 0.870 16 C -0.078 4.078 17 N -0.148 5.148 18 C -0.019 4.019 19 C -0.644 4.644 20 H 0.070 0.930 21 C -0.184 4.184 22 N -0.545 5.545 23 Si 0.897 3.103 24 H -0.215 1.215 25 H -0.213 1.213 26 H -0.209 1.209 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.161 0.839 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.033 0.967 43 H 0.048 0.952 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.184 -1.459 -20.840 20.925 hybrid contribution 0.152 -1.265 -1.314 1.830 sum -1.032 -2.725 -22.154 22.345 Atomic orbital electron populations 1.21639 0.93868 1.01456 1.02388 1.22299 0.96106 0.99826 0.92658 0.89467 1.23139 0.88140 0.98373 0.98312 1.63298 1.27655 1.23627 1.07790 1.22701 1.03622 0.91529 0.93073 1.23059 0.90830 1.03184 1.03138 1.23045 1.01191 1.02993 0.94223 1.23656 0.98682 1.01529 0.87434 1.22908 0.94994 0.95307 0.90756 0.89510 1.60584 1.45608 1.23602 1.00928 1.22132 1.01801 0.94698 0.87763 1.19145 0.86865 0.97714 0.97012 0.86993 1.29246 0.94684 0.92595 0.91241 1.81067 1.12575 1.10561 1.10580 1.19275 0.97408 0.95356 0.89910 1.21995 1.55822 0.94249 0.92328 0.93035 1.25797 0.93440 0.98474 1.00709 1.70781 1.46023 1.02866 1.34828 0.83540 0.76902 0.74548 0.75341 1.21489 1.21304 1.20858 0.91266 0.92843 0.93126 0.90419 0.93193 0.89147 0.88198 0.88856 0.88787 0.88423 0.90418 0.92458 0.83869 0.94768 0.89185 0.96727 0.95194 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.31 37.15 0.35 -0.85 16 2 C -0.09 -0.87 3.33 -88.37 -0.29 -1.17 16 3 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.05 0.44 5.49 -2.18 -0.01 0.43 16 5 N -0.50 -5.29 5.34 -223.15 -1.19 -6.49 16 6 C 0.00 0.00 5.08 -67.71 -0.34 -0.34 16 7 C -0.16 -1.41 10.46 -26.73 -0.28 -1.69 16 8 C -0.18 -1.38 9.82 -26.73 -0.26 -1.64 16 9 C 0.02 0.19 6.59 -2.84 -0.02 0.17 16 10 C 0.07 0.79 2.71 -65.89 -0.18 0.61 16 11 H 0.09 0.94 7.75 -51.93 -0.40 0.54 16 12 N -0.68 -8.64 6.36 -104.80 -0.67 -9.31 16 13 C 0.07 0.95 4.98 -3.82 -0.02 0.93 16 14 C 0.01 0.27 2.42 -93.41 -0.23 0.04 16 15 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 16 C 0.24 4.84 12.98 -20.74 -0.27 4.57 16 17 N -0.47 -10.30 18.54 42.17 0.78 -9.51 16 18 C 0.02 0.44 3.73 -27.89 -0.10 0.33 16 19 C -0.61 -16.29 8.60 -34.44 -0.30 -16.59 16 20 H 0.05 1.40 7.59 -52.49 -0.40 1.00 16 21 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 22 N -0.91 -26.73 13.65 55.43 0.76 -25.97 16 23 Si 1.07 25.08 29.90 -169.99 -5.08 20.00 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.44 7.64 -51.93 -0.40 0.04 16 32 H 0.09 0.85 7.67 -51.93 -0.40 0.45 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.76 7.95 -51.93 -0.41 0.35 16 37 H 0.08 0.99 7.53 -51.93 -0.39 0.59 16 38 H 0.06 0.64 7.30 -51.93 -0.38 0.26 16 39 H 0.34 4.68 7.18 -39.29 -0.28 4.39 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 1.21 8.08 -51.92 -0.42 0.79 16 42 H 0.01 0.35 8.01 -51.93 -0.42 -0.06 16 43 H 0.03 0.68 8.01 -51.92 -0.42 0.27 16 44 H 0.27 7.74 7.22 -40.82 -0.29 7.44 16 LS Contribution 359.38 15.07 5.42 5.42 Total: -1.00 -29.64 359.38 -9.67 -39.31 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.63 Total: 1.29 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.06 Total: -14.73 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.32 Total: -51.28 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.64 -9.67 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582780719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.268 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds