Wall clock time and date at job start Mon Mar 30 2020 01:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 110.90608 * 2 1 4 4 C 1.55111 * 111.14876 * 236.10414 * 2 1 3 5 5 N 1.47856 * 104.90454 * 205.05192 * 4 2 1 6 6 C 1.46900 * 110.99630 * 146.24245 * 5 4 2 7 7 C 1.53002 * 117.49884 * 122.77883 * 6 5 4 8 8 C 1.52996 * 59.99984 * 252.50433 * 7 6 5 9 9 C 1.47443 * 108.56508 * 23.97332 * 5 4 2 10 10 C 1.54316 * 107.23629 * 359.00772 * 9 5 4 11 11 H 1.09005 * 110.70024 * 96.27451 * 10 9 5 12 12 N 1.46893 * 110.70568 * 219.33358 * 10 9 5 13 13 C 1.46896 * 111.00219 * 271.19691 * 12 10 9 14 14 C 1.53003 * 109.47068 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.47372 * 54.99946 * 14 13 12 16 16 C 1.47201 * 109.46882 * 294.99552 * 14 13 12 17 17 N 5.87409 * 122.70535 * 74.26707 * 2 1 3 18 18 C 1.52998 * 109.47069 * 175.00111 * 14 13 12 19 19 C 1.50696 * 109.47188 * 185.00074 * 18 14 13 20 20 H 1.07995 * 120.00332 * 359.97438 * 19 18 14 21 21 C 1.37880 * 119.99983 * 180.02562 * 19 18 14 22 22 N 1.31517 * 120.00210 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99914 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99403 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00010 * 23 21 19 27 27 H 1.09000 * 109.47669 * 296.13886 * 1 2 3 28 28 H 1.08995 * 109.47201 * 56.14007 * 1 2 3 29 29 H 1.08999 * 109.47415 * 176.13794 * 1 2 3 30 30 H 1.08994 * 110.42569 * 86.13289 * 4 2 1 31 31 H 1.09001 * 110.30811 * 323.90734 * 4 2 1 32 32 H 1.08999 * 115.54575 * 268.47857 * 6 5 4 33 33 H 1.08999 * 117.49373 * 359.97438 * 7 6 5 34 34 H 1.09001 * 117.50008 * 145.01382 * 7 6 5 35 35 H 1.08993 * 117.50035 * 252.51115 * 8 7 6 36 36 H 1.09002 * 117.51737 * 107.48024 * 8 7 6 37 37 H 1.09003 * 109.87977 * 239.60178 * 9 5 4 38 38 H 1.08999 * 110.02215 * 118.49761 * 9 5 4 39 39 H 1.00900 * 111.00334 * 35.15739 * 12 10 9 40 40 H 1.08993 * 109.47105 * 59.99881 * 13 12 10 41 41 H 1.09010 * 109.47042 * 300.00077 * 13 12 10 42 42 H 1.09004 * 109.47223 * 64.99414 * 18 14 13 43 43 H 1.09010 * 109.47071 * 304.99766 * 18 14 13 44 44 H 0.97000 * 119.99462 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9189 1.0182 0.0000 4 6 2.0895 -0.8068 -1.2008 5 7 3.4340 -1.2463 -0.7701 6 6 3.7614 -2.5643 -1.3303 7 6 5.0295 -2.6760 -2.1790 8 6 3.6543 -2.7338 -2.8471 9 6 3.4688 -1.2750 0.7036 10 6 2.0857 -0.8070 1.2029 11 1 1.4457 -1.6618 1.4221 12 7 2.2241 0.0528 2.3858 13 6 2.2218 -0.7447 3.6195 14 6 2.3668 0.1836 4.8271 15 1 1.5846 0.9420 4.7984 16 6 3.6854 0.8368 4.7881 17 7 4.7038 1.3403 4.7576 18 6 2.2396 -0.6319 6.1153 19 6 2.2594 0.2969 7.3018 20 1 2.3537 1.3623 7.1521 21 6 2.1581 -0.2135 8.5787 22 7 2.0437 -1.5109 8.7611 23 14 2.1833 0.9379 10.0495 24 1 3.5840 1.1292 10.5043 25 1 1.6055 2.2496 9.6613 26 1 1.3808 0.3501 11.1520 27 1 -0.3634 0.4527 0.9225 28 1 -0.3633 0.5725 -0.8533 29 1 -0.3634 -1.0253 -0.0692 30 1 2.1625 -0.1726 -2.0842 31 1 1.4556 -1.6696 -1.4052 32 1 3.4948 -3.4188 -0.7083 33 1 5.6206 -1.7714 -2.3220 34 1 5.5976 -3.6041 -2.1154 35 1 3.3176 -3.6998 -3.2230 36 1 3.3405 -1.8674 -3.4294 37 1 4.2429 -0.6002 1.0693 38 1 3.6657 -2.2886 1.0526 39 1 3.0553 0.6214 2.3243 40 1 3.0544 -1.4478 3.5991 41 1 1.2836 -1.2946 3.6949 42 1 3.0732 -1.3307 6.1869 43 1 1.3010 -1.1861 6.1034 44 1 2.0303 -2.1087 7.9973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582780719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:02 Heat of formation + Delta-G solvation = 21.615340 kcal Electronic energy + Delta-G solvation = -21283.701608 eV Core-core repulsion = 18235.146423 eV Total energy + Delta-G solvation = -3048.555184 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74011 -38.88888 -37.53628 -36.09232 -35.28667 -33.06885 -32.71191 -29.17737 -27.37702 -26.56211 -24.46555 -23.84765 -23.24902 -22.84247 -21.27287 -21.08766 -19.07624 -18.30565 -17.49690 -17.05434 -16.69911 -15.93528 -15.67128 -15.43419 -15.23220 -14.91543 -14.39670 -14.31795 -14.15147 -14.03511 -13.79681 -13.64072 -13.38701 -13.35869 -13.21041 -12.78312 -12.70517 -12.44558 -12.40497 -12.25113 -12.00697 -11.95035 -11.81147 -11.73122 -11.47184 -11.35333 -11.08552 -10.67341 -10.53778 -9.55896 -9.22062 -8.64553 -6.35504 1.53497 1.59737 1.77879 1.84251 1.85920 2.55417 2.72093 2.86382 3.05500 3.10825 3.20837 3.64391 3.66262 3.91369 3.99006 4.06380 4.10387 4.22533 4.26437 4.29008 4.36595 4.48121 4.55557 4.65544 4.73370 4.75747 4.80259 4.83203 4.85643 4.90219 4.94827 5.05548 5.13357 5.19805 5.26582 5.34318 5.38857 5.45386 5.87275 5.90713 6.02371 6.11430 6.20360 6.22541 6.61977 6.67367 7.41994 8.77679 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.003207 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.908635 B = 8730.069996 C = 8994.188858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 H 0.076 0.924 4 C 0.053 3.947 5 N -0.511 5.511 6 C -0.016 4.016 7 C -0.169 4.169 8 C -0.161 4.161 9 C 0.021 3.979 10 C 0.075 3.925 11 H 0.093 0.907 12 N -0.674 5.674 13 C 0.079 3.921 14 C 0.026 3.974 15 H 0.122 0.878 16 C 0.249 3.751 17 N -0.500 5.500 18 C 0.023 3.977 19 C -0.615 4.615 20 H 0.045 0.955 21 C -0.030 4.030 22 N -0.936 5.936 23 Si 1.107 2.893 24 H -0.284 1.284 25 H -0.269 1.269 26 H -0.279 1.279 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.337 0.663 40 H 0.032 0.968 41 H 0.106 0.894 42 H -0.004 1.004 43 H 0.033 0.967 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 -2.719 -23.655 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.104 4.104 3 H 0.094 0.906 4 C -0.075 4.075 5 N -0.235 5.235 6 C -0.125 4.125 7 C -0.207 4.207 8 C -0.198 4.198 9 C -0.109 4.109 10 C -0.037 4.037 11 H 0.112 0.888 12 N -0.304 5.304 13 C -0.052 4.052 14 C 0.004 3.996 15 H 0.140 0.860 16 C -0.068 4.068 17 N -0.177 5.177 18 C -0.016 4.016 19 C -0.653 4.653 20 H 0.064 0.936 21 C -0.229 4.229 22 N -0.573 5.573 23 Si 0.930 3.070 24 H -0.211 1.211 25 H -0.194 1.194 26 H -0.204 1.204 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.155 0.845 40 H 0.050 0.950 41 H 0.124 0.876 42 H 0.014 0.986 43 H 0.052 0.948 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.142 -1.414 -22.212 22.360 hybrid contribution 0.477 -1.282 -0.958 1.670 sum -1.666 -2.696 -23.170 23.386 Atomic orbital electron populations 1.21596 0.92832 1.02059 1.02361 1.22254 0.96847 0.99057 0.92239 0.90585 1.23138 0.87597 0.98615 0.98104 1.63271 1.28530 1.24591 1.07144 1.22772 1.04649 0.90965 0.94131 1.23099 0.91080 1.03257 1.03260 1.23103 1.00047 1.03869 0.92821 1.23529 0.98258 1.00883 0.88241 1.22951 0.94997 0.95426 0.90287 0.88847 1.60586 1.45225 1.23622 1.00959 1.21972 1.02552 0.93727 0.86914 1.19079 0.86046 0.97833 0.96638 0.86002 1.29630 0.94816 0.91942 0.90377 1.81065 1.13507 1.11627 1.11523 1.19142 0.96653 0.94877 0.90951 1.22396 1.54570 0.94594 0.93737 0.93626 1.27056 0.93019 0.99036 1.03796 1.70886 1.48225 1.03604 1.34601 0.83039 0.77215 0.73785 0.72954 1.21068 1.19404 1.20415 0.92359 0.91636 0.92366 0.89807 0.92304 0.89119 0.89232 0.87814 0.87154 0.88315 0.92305 0.92646 0.84478 0.94997 0.87580 0.98590 0.94849 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.31 71.98 0.67 -1.35 16 2 C -0.08 -1.52 3.33 -9.34 -0.03 -1.55 16 3 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 4 C 0.05 0.87 5.49 86.84 0.48 1.35 16 5 N -0.51 -10.26 5.34 -859.91 -4.59 -14.85 16 6 C -0.02 -0.28 5.08 44.92 0.23 -0.05 16 7 C -0.17 -2.69 10.46 30.59 0.32 -2.37 16 8 C -0.16 -2.17 9.82 30.59 0.30 -1.87 16 9 C 0.02 0.46 6.59 86.65 0.57 1.03 16 10 C 0.07 1.53 2.71 46.10 0.12 1.65 16 11 H 0.09 1.83 7.75 -2.38 -0.02 1.81 16 12 N -0.67 -16.44 6.36 -485.49 -3.09 -19.53 16 13 C 0.08 2.16 4.98 86.31 0.43 2.59 16 14 C 0.03 0.92 2.42 -12.60 -0.03 0.89 16 15 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 16 C 0.25 9.98 12.98 89.44 1.16 11.14 16 17 N -0.50 -21.82 18.54 20.01 0.37 -21.44 16 18 C 0.02 1.03 3.73 29.85 0.11 1.14 16 19 C -0.61 -32.92 8.60 25.60 0.22 -32.70 16 20 H 0.05 2.45 7.59 -2.91 -0.02 2.43 16 21 C -0.03 -1.69 5.46 84.65 0.46 -1.22 16 22 N -0.94 -55.29 13.65 21.45 0.29 -55.00 16 23 Si 1.11 49.95 29.90 68.60 2.05 52.00 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 0.89 7.64 -2.39 -0.02 0.87 16 32 H 0.09 1.58 7.67 -2.39 -0.02 1.56 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.32 7.95 -2.39 -0.02 1.31 16 37 H 0.06 1.50 7.53 -2.39 -0.02 1.49 16 38 H 0.06 1.21 7.30 -2.39 -0.02 1.20 16 39 H 0.34 9.00 7.18 -89.69 -0.64 8.36 16 40 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.11 2.62 8.08 -2.38 -0.02 2.60 16 42 H 0.00 -0.21 8.01 -2.38 -0.02 -0.23 16 43 H 0.03 1.50 8.01 -2.38 -0.02 1.49 16 44 H 0.26 15.26 7.22 -92.71 -0.67 14.59 16 Total: -1.00 -62.59 359.38 0.47 -62.12 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.42 Total: 18.03 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 5.02 Total: -21.33 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -7.02 Total: -110.82 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.00 kcal Total: -62.59 0.47 -62.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582780719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.735 kcal (2) G-P(sol) polarization free energy of solvation -62.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds