Wall clock time and date at job start Mon Mar 30 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46824 * 2 1 4 4 C 1.53000 * 109.47135 * 239.99889 * 2 1 3 5 5 C 1.50699 * 109.46806 * 174.99903 * 4 2 1 6 6 H 1.08002 * 120.00308 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00161 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99777 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00353 * 180.02562 * 7 5 4 10 10 H 1.48486 * 109.47075 * 60.00302 * 9 7 5 11 11 H 1.48502 * 109.47070 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47039 * 300.00266 * 9 7 5 13 13 N 1.46900 * 109.46887 * 119.99910 * 2 1 3 14 14 C 1.47443 * 111.00227 * 55.12422 * 13 2 1 15 15 C 1.54312 * 107.23612 * 236.74273 * 14 13 2 16 16 C 1.55142 * 103.17714 * 337.62814 * 15 14 13 17 17 H 1.08996 * 110.99420 * 277.65160 * 16 15 14 18 18 C 1.53001 * 110.99002 * 153.82761 * 16 15 14 19 19 C 1.50703 * 109.46636 * 66.45802 * 18 16 15 20 20 C 1.39874 * 126.04090 * 90.02421 * 19 18 16 21 21 N 1.30838 * 108.20159 * 179.97438 * 20 19 18 22 22 N 1.40079 * 108.20749 * 359.97438 * 21 20 19 23 23 C 1.46499 * 126.03759 * 180.02562 * 22 21 20 24 24 C 1.34955 * 107.92686 * 359.75678 * 22 21 20 25 25 C 1.47844 * 110.99982 * 294.28266 * 13 2 1 26 26 H 1.08998 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47272 * 300.00213 * 1 2 3 28 28 H 1.09005 * 109.46370 * 60.00399 * 1 2 3 29 29 H 1.08993 * 109.46991 * 294.99556 * 4 2 1 30 30 H 1.09005 * 109.47209 * 55.00291 * 4 2 1 31 31 H 0.96999 * 120.00137 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.88254 * 117.33308 * 14 13 2 33 33 H 1.09001 * 110.02167 * 356.22840 * 14 13 2 34 34 H 1.09002 * 110.70596 * 96.10119 * 15 14 13 35 35 H 1.09005 * 110.70742 * 219.16269 * 15 14 13 36 36 H 1.08998 * 109.47295 * 186.45297 * 18 16 15 37 37 H 1.08993 * 109.47685 * 306.46005 * 18 16 15 38 38 H 1.08003 * 125.89830 * 359.97438 * 20 19 18 39 39 H 1.08994 * 109.47470 * 90.01835 * 23 22 21 40 40 H 1.09000 * 109.47008 * 210.02549 * 23 22 21 41 41 H 1.09005 * 109.46895 * 330.02019 * 23 22 21 42 42 H 1.07994 * 126.12545 * 180.24287 * 24 22 21 43 43 H 1.08999 * 110.37744 * 265.19940 * 25 13 2 44 44 H 1.09008 * 110.37208 * 27.53592 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0791 -0.0861 -0.5391 7 6 4.2306 -1.1935 -2.3576 8 7 3.5766 -1.8378 -3.2994 9 14 6.0923 -1.0622 -2.4359 10 1 6.6839 -1.6881 -1.2263 11 1 6.5874 -1.7622 -3.6485 12 1 6.4856 0.3686 -2.4956 13 7 2.0197 -0.6925 1.1995 14 6 1.4537 -2.0507 1.2935 15 6 0.7326 -2.1524 2.6540 16 6 1.4126 -1.0427 3.4985 17 1 2.3530 -1.3953 3.9219 18 6 0.4747 -0.5375 4.5966 19 6 0.2324 -1.6390 5.5962 20 6 0.9918 -1.8910 6.7435 21 7 0.4753 -2.9249 7.3567 22 7 -0.6312 -3.3638 6.6183 23 6 -1.4969 -4.4970 6.9541 24 6 -0.7625 -2.5549 5.5460 25 6 1.6611 0.0528 2.4249 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.7518 -1.7715 -1.2055 30 1 1.6055 -0.2617 -2.1370 31 1 4.0611 -2.2452 -4.0344 32 1 2.2531 -2.7898 1.2413 33 1 0.7430 -2.2157 0.4838 34 1 -0.3330 -1.9525 2.5412 35 1 0.8941 -3.1322 3.1035 36 1 0.9301 0.3156 5.0995 37 1 -0.4737 -0.2341 4.1534 38 1 1.8555 -1.3290 7.0672 39 1 -2.3212 -4.1520 7.5782 40 1 -1.8932 -4.9353 6.0382 41 1 -0.9202 -5.2468 7.4958 42 1 -1.5233 -2.6275 4.7831 43 1 2.4826 0.7016 2.7286 44 1 0.7552 0.6369 2.2625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:12 Heat of formation + Delta-G solvation = 75.587793 kcal Electronic energy + Delta-G solvation = -21726.400667 eV Core-core repulsion = 18680.185903 eV Total energy + Delta-G solvation = -3046.214763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32070 -39.01744 -35.07561 -33.43525 -32.42272 -31.18533 -29.12160 -28.65802 -27.24305 -27.04247 -24.63837 -23.02584 -21.67433 -21.12681 -20.52264 -19.75826 -18.39505 -16.85682 -16.15099 -15.79267 -15.60491 -15.15365 -14.60397 -14.40414 -13.81254 -13.59235 -13.25379 -13.15769 -13.11259 -12.79632 -12.47946 -12.32647 -12.16073 -11.74200 -11.62489 -11.32219 -11.16596 -10.89161 -10.71174 -10.60458 -10.55417 -10.41839 -10.27772 -10.13625 -9.82002 -9.53730 -9.09141 -8.95715 -8.41208 -8.20500 -7.34891 -5.83919 -3.81392 1.76790 2.38461 2.71412 3.44824 3.47938 3.52300 4.33293 4.60636 4.68490 4.72554 4.84772 4.86590 4.96187 5.09606 5.12009 5.25108 5.40620 5.49729 5.55085 5.67729 5.68834 5.78068 5.83951 5.96132 5.96434 6.04312 6.08520 6.13643 6.19612 6.21958 6.47795 6.53979 6.58571 6.62327 6.72951 6.80211 6.87473 7.06585 7.57567 7.60334 7.76163 7.93559 8.10287 8.18674 8.64376 9.24505 9.80054 11.28169 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.003505 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.744852 B = 7986.040138 C = 8192.552640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.068 0.932 4 C 0.031 3.969 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.906 5.906 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.501 5.501 14 C 0.046 3.954 15 C -0.130 4.130 16 C -0.090 4.090 17 H 0.080 0.920 18 C -0.030 4.030 19 C -0.223 4.223 20 C 0.052 3.948 21 N -0.302 5.302 22 N -0.381 5.381 23 C 0.103 3.897 24 C 0.055 3.945 25 C 0.041 3.959 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.257 0.743 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.181 0.819 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.170 0.830 43 H 0.070 0.930 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 -1.333 18.685 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.086 0.914 4 C -0.006 4.006 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.224 5.224 14 C -0.082 4.082 15 C -0.169 4.169 16 C -0.109 4.109 17 H 0.099 0.901 18 C -0.069 4.069 19 C -0.235 4.235 20 C -0.134 4.134 21 N -0.124 5.124 22 N -0.163 5.163 23 C -0.039 4.039 24 C -0.091 4.091 25 C -0.087 4.087 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.198 0.802 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.187 0.813 43 H 0.089 0.911 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.337 -2.386 19.499 22.681 hybrid contribution 0.028 0.466 -0.851 0.971 sum -11.309 -1.920 18.648 21.893 Atomic orbital electron populations 1.22560 0.99919 1.01238 1.00592 1.22032 0.89917 0.98475 0.92389 0.91370 1.19176 0.96341 0.95285 0.89836 1.21154 0.91866 1.32868 1.06878 0.92186 1.25009 0.98003 0.95918 0.96017 1.69958 1.35274 1.37031 1.12415 0.86689 0.86414 0.77986 0.77045 1.20359 1.21712 1.20504 1.63709 1.56581 1.01186 1.00918 1.22748 0.97680 0.92503 0.95247 1.22813 0.98898 0.98740 0.96450 1.22366 0.98569 0.95711 0.94233 0.90147 1.19843 0.99272 0.94414 0.93355 1.20095 0.99609 1.03347 1.00426 1.23815 1.00014 0.95451 0.94146 1.77320 1.00057 1.15431 1.19565 1.48418 1.23603 1.25193 1.19117 1.21815 0.92967 0.86549 1.02533 1.22316 1.01085 0.93090 0.92597 1.23218 0.99132 0.96051 0.90329 0.92846 0.93945 0.92707 0.96406 0.96514 0.93335 0.91182 0.92256 0.92429 0.91981 0.91121 0.91674 0.80163 0.90997 0.89541 0.89427 0.81300 0.91149 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.63 37.16 0.32 -2.82 16 2 C 0.08 1.65 2.24 -67.71 -0.15 1.50 16 3 H 0.07 1.44 8.13 -51.93 -0.42 1.02 16 4 C 0.03 0.79 4.35 -27.88 -0.12 0.67 16 5 C -0.49 -13.96 8.84 -34.44 -0.30 -14.27 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.68 13.29 55.43 0.74 -26.95 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 N -0.50 -9.61 4.88 -222.98 -1.09 -10.70 16 14 C 0.05 0.82 5.52 -2.84 -0.02 0.80 16 15 C -0.13 -1.78 5.68 -24.91 -0.14 -1.92 16 16 C -0.09 -1.16 3.08 -88.22 -0.27 -1.43 16 17 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.03 -0.31 5.24 -27.88 -0.15 -0.46 16 19 C -0.22 -2.43 5.01 -105.05 -0.53 -2.96 16 20 C 0.05 0.59 11.96 -17.36 -0.21 0.38 16 21 N -0.30 -3.81 12.58 30.63 0.39 -3.43 16 22 N -0.38 -3.98 4.01 -68.16 -0.27 -4.25 16 23 C 0.10 0.64 11.47 59.85 0.69 1.32 16 24 C 0.05 0.55 11.06 -17.22 -0.19 0.36 16 25 C 0.04 0.62 5.98 -2.04 -0.01 0.60 16 26 H 0.05 0.90 6.06 -51.93 -0.31 0.59 16 27 H 0.04 0.63 6.28 -51.93 -0.33 0.30 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.02 0.49 6.69 -51.93 -0.35 0.14 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.06 1.11 4.80 -51.93 -0.25 0.86 16 34 H 0.06 0.71 8.01 -51.93 -0.42 0.30 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.18 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.04 0.61 5.81 -51.92 -0.30 0.31 16 LS Contribution 347.59 15.07 5.24 5.24 Total: -1.00 -33.15 347.59 -8.61 -41.77 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.41 Total: -2.22 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -1.18 Total: -16.86 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.24 Total: -45.33 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.15 -8.61 -41.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.355 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds