Wall clock time and date at job start Mon Mar 30 2020 02:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46655 * 2 1 4 4 C 1.53002 * 109.47200 * 119.99730 * 2 1 3 5 5 C 1.50707 * 109.46914 * 183.19998 * 4 2 1 6 6 H 1.07998 * 119.99862 * 355.16484 * 5 4 2 7 7 C 1.37877 * 119.99825 * 175.15478 * 5 4 2 8 8 N 1.31514 * 120.00141 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99749 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47609 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47257 * 120.00571 * 9 7 5 12 12 H 1.48506 * 109.47193 * 239.99987 * 9 7 5 13 13 N 1.46897 * 109.47292 * 240.00165 * 2 1 3 14 14 C 1.47450 * 110.99947 * 62.47490 * 13 2 1 15 15 C 1.54323 * 107.23250 * 236.74242 * 14 13 2 16 16 C 1.55137 * 103.17704 * 337.63111 * 15 14 13 17 17 H 1.08997 * 110.99172 * 277.64751 * 16 15 14 18 18 C 1.53004 * 110.98881 * 153.82882 * 16 15 14 19 19 C 1.50705 * 109.46785 * 66.45753 * 18 16 15 20 20 C 1.39867 * 126.04038 * 90.02567 * 19 18 16 21 21 N 1.30844 * 108.19983 * 179.97438 * 20 19 18 22 22 N 1.40078 * 108.20328 * 359.97438 * 21 20 19 23 23 C 1.46509 * 126.03451 * 180.02562 * 22 21 20 24 24 C 1.34948 * 107.93164 * 359.76082 * 22 21 20 25 25 C 1.47852 * 110.99844 * 301.63698 * 13 2 1 26 26 H 1.08998 * 109.47124 * 66.99710 * 1 2 3 27 27 H 1.09002 * 109.46658 * 186.99842 * 1 2 3 28 28 H 1.08995 * 109.46788 * 306.99097 * 1 2 3 29 29 H 1.08997 * 109.47123 * 303.20136 * 4 2 1 30 30 H 1.09001 * 109.46933 * 63.20731 * 4 2 1 31 31 H 0.96999 * 120.00568 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.88330 * 117.34134 * 14 13 2 33 33 H 1.08998 * 110.02361 * 356.22670 * 14 13 2 34 34 H 1.09000 * 110.70051 * 96.10073 * 15 14 13 35 35 H 1.08995 * 110.70090 * 219.16083 * 15 14 13 36 36 H 1.08999 * 109.46994 * 186.45055 * 18 16 15 37 37 H 1.08993 * 109.47062 * 306.45248 * 18 16 15 38 38 H 1.07994 * 125.90143 * 359.97438 * 20 19 18 39 39 H 1.08996 * 109.46684 * 90.02979 * 23 22 21 40 40 H 1.08998 * 109.46710 * 210.02567 * 23 22 21 41 41 H 1.08997 * 109.46891 * 330.02578 * 23 22 21 42 42 H 1.08000 * 126.12999 * 180.23572 * 24 22 21 43 43 H 1.09001 * 110.36875 * 265.18788 * 25 13 2 44 44 H 1.09001 * 110.37223 * 27.52868 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5450 -0.6528 1.2895 6 1 4.0879 -0.2149 0.4650 7 6 4.2288 -1.1492 2.3791 8 7 3.5677 -1.6828 3.3830 9 14 6.0941 -1.0638 2.4292 10 1 6.5939 -0.4217 1.1871 11 1 6.5216 -0.2646 3.6056 12 1 6.6498 -2.4369 2.5354 13 7 2.0197 -0.6924 -1.1994 14 6 1.5961 0.0097 -2.4249 15 6 0.8120 -1.0040 -3.2847 16 6 1.3206 -2.3751 -2.7668 17 1 2.2669 -2.6433 -3.2366 18 6 0.2724 -3.4675 -2.9878 19 6 0.0904 -3.6973 -4.4661 20 6 0.8044 -4.6084 -5.2512 21 7 0.3653 -4.5203 -6.4807 22 7 -0.6438 -3.5494 -6.5164 23 6 -1.4028 -3.1384 -7.7003 24 6 -0.7973 -3.0635 -5.2669 25 6 1.5137 -2.0806 -1.2535 26 1 -0.3633 0.4016 -0.9459 27 1 -0.3633 -1.0201 0.1252 28 1 -0.3633 0.6183 0.8208 29 1 1.6306 -0.2415 2.1383 30 1 1.7244 -1.7641 1.2210 31 1 4.0487 -2.0324 4.1494 32 1 2.4709 0.3614 -2.9718 33 1 0.9550 0.8532 -2.1690 34 1 -0.2603 -0.9026 -3.1178 35 1 1.0499 -0.8786 -4.3409 36 1 0.6052 -4.3914 -2.5148 37 1 -0.6754 -3.1556 -2.5491 38 1 1.5834 -5.2702 -4.9029 39 1 -2.2939 -3.7591 -7.7939 40 1 -1.6967 -2.0937 -7.5988 41 1 -0.7825 -3.2567 -8.5887 42 1 -1.5006 -2.3029 -4.9613 43 1 2.2431 -2.7673 -0.8238 44 1 0.5622 -2.1584 -0.7275 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:17 Heat of formation + Delta-G solvation = 74.850470 kcal Electronic energy + Delta-G solvation = -21794.869810 eV Core-core repulsion = 18748.623074 eV Total energy + Delta-G solvation = -3046.246736 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29348 -39.01210 -34.99560 -33.44010 -32.44876 -31.24084 -29.27452 -28.21754 -27.35288 -27.04329 -24.72284 -23.12667 -21.35202 -21.11663 -20.59535 -19.70952 -18.56284 -16.82045 -16.11805 -15.65704 -15.54627 -15.09075 -14.58182 -14.36365 -13.84209 -13.77810 -13.35475 -13.16279 -13.03093 -12.58812 -12.46443 -12.34401 -12.12893 -11.76935 -11.52502 -11.34780 -11.25581 -10.89470 -10.78999 -10.59246 -10.51459 -10.32438 -10.23264 -10.10860 -9.84333 -9.51258 -9.07724 -8.93944 -8.37975 -8.21892 -7.35144 -5.84323 -3.81819 1.78778 2.40196 2.75106 3.41641 3.49089 3.55527 4.34375 4.60663 4.70242 4.74024 4.84671 4.91769 4.99245 5.09170 5.12614 5.24624 5.41811 5.52007 5.54708 5.68329 5.75140 5.81198 5.86105 5.95091 6.01676 6.06489 6.09898 6.12631 6.18390 6.28957 6.45144 6.54475 6.57938 6.65379 6.78877 6.83739 6.89992 7.04802 7.60220 7.60533 7.77897 7.93154 8.09462 8.18829 8.64761 9.26072 9.80213 11.27769 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026916 B = 0.003665 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.018021 B = 7638.663866 C = 8085.953924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.081 3.919 3 H 0.068 0.932 4 C 0.030 3.970 5 C -0.489 4.489 6 H 0.063 0.937 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.502 5.502 14 C 0.037 3.963 15 C -0.128 4.128 16 C -0.092 4.092 17 H 0.079 0.921 18 C -0.031 4.031 19 C -0.220 4.220 20 C 0.052 3.948 21 N -0.303 5.303 22 N -0.382 5.382 23 C 0.104 3.896 24 C 0.052 3.948 25 C 0.052 3.948 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.020 0.980 30 H 0.015 0.985 31 H 0.256 0.744 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.182 0.818 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.169 0.831 43 H 0.081 0.919 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.837 -1.742 -18.701 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.225 5.225 14 C -0.091 4.091 15 C -0.167 4.167 16 C -0.111 4.111 17 H 0.098 0.902 18 C -0.070 4.070 19 C -0.232 4.232 20 C -0.134 4.134 21 N -0.124 5.124 22 N -0.165 5.165 23 C -0.038 4.038 24 C -0.093 4.093 25 C -0.075 4.075 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.199 0.801 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.186 0.814 43 H 0.099 0.901 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.230 -2.185 -19.839 22.901 hybrid contribution -0.003 0.420 0.900 0.993 sum -11.233 -1.765 -18.939 22.090 Atomic orbital electron populations 1.22552 0.99937 1.01408 1.00372 1.22061 0.89900 0.98441 0.92378 0.91413 1.19183 0.96438 0.95105 0.90017 1.21261 0.91637 1.37240 1.02618 0.91877 1.25019 0.97990 0.96047 0.95931 1.69975 1.35003 1.41651 1.07979 0.86585 0.86551 0.77450 0.77701 1.19742 1.21473 1.21339 1.63719 1.56879 1.01213 1.00708 1.22833 0.97737 0.96367 0.92173 1.22754 0.99151 0.95537 0.99240 1.22412 0.98374 0.93723 0.96597 0.90231 1.19853 0.98795 0.98973 0.89426 1.20132 1.02113 1.03205 0.97720 1.23844 0.99948 0.99272 0.90289 1.77324 1.04604 1.09264 1.21223 1.48413 1.29672 1.30905 1.07482 1.21799 0.95406 1.00552 0.86043 1.22294 1.01513 1.00715 0.84805 1.23130 0.99191 0.91438 0.93763 0.93970 0.92768 0.92825 0.96171 0.96683 0.93441 0.91705 0.93374 0.92342 0.92109 0.90842 0.91625 0.80084 0.91023 0.89649 0.89477 0.81370 0.90077 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.55 37.16 0.32 -2.82 16 2 C 0.08 1.65 2.18 -67.71 -0.15 1.51 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.03 0.76 4.33 -27.88 -0.12 0.64 16 5 C -0.49 -13.85 8.81 -34.44 -0.30 -14.15 16 6 H 0.06 1.81 7.70 -52.49 -0.40 1.40 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.27 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.50 -9.60 4.82 -222.96 -1.07 -10.67 16 14 C 0.04 0.58 6.24 -2.83 -0.02 0.56 16 15 C -0.13 -1.65 5.68 -24.91 -0.14 -1.79 16 16 C -0.09 -1.26 3.08 -88.23 -0.27 -1.53 16 17 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 18 C -0.03 -0.36 5.24 -27.88 -0.15 -0.51 16 19 C -0.22 -2.51 5.01 -105.05 -0.53 -3.04 16 20 C 0.05 0.63 11.96 -17.36 -0.21 0.42 16 21 N -0.30 -3.89 12.58 30.62 0.39 -3.50 16 22 N -0.38 -4.01 4.01 -68.16 -0.27 -4.28 16 23 C 0.10 0.63 11.47 59.85 0.69 1.32 16 24 C 0.05 0.53 11.06 -17.22 -0.19 0.34 16 25 C 0.05 0.91 4.65 -2.04 -0.01 0.90 16 26 H 0.04 0.63 6.32 -51.93 -0.33 0.30 16 27 H 0.05 0.92 6.23 -51.93 -0.32 0.60 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.01 0.40 7.07 -51.93 -0.37 0.03 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.72 6.23 -51.93 -0.32 0.40 16 34 H 0.06 0.69 8.01 -51.93 -0.42 0.27 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.08 1.60 8.13 -51.93 -0.42 1.18 16 44 H 0.05 0.82 5.38 -51.93 -0.28 0.54 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -32.85 348.26 -8.67 -41.52 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.49 Total: -2.02 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.18 Total: -16.83 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.23 Total: -45.20 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.85 -8.67 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.371 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds