Wall clock time and date at job start Mon Mar 30 2020 02:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46655 * 2 1 4 4 C 1.53002 * 109.47200 * 119.99730 * 2 1 3 5 5 C 1.50707 * 109.46914 * 183.19998 * 4 2 1 6 6 H 1.07998 * 119.99862 * 355.16484 * 5 4 2 7 7 C 1.37877 * 119.99825 * 175.15478 * 5 4 2 8 8 N 1.31514 * 120.00141 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99749 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47609 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47257 * 120.00571 * 9 7 5 12 12 H 1.48506 * 109.47193 * 239.99987 * 9 7 5 13 13 N 1.46897 * 109.47292 * 240.00165 * 2 1 3 14 14 C 1.47450 * 110.99947 * 62.47490 * 13 2 1 15 15 C 1.54323 * 107.23250 * 236.74242 * 14 13 2 16 16 C 1.55137 * 103.17704 * 337.63111 * 15 14 13 17 17 H 1.08997 * 110.99172 * 277.64751 * 16 15 14 18 18 C 1.53004 * 110.98881 * 153.82882 * 16 15 14 19 19 C 1.50705 * 109.46785 * 66.45753 * 18 16 15 20 20 C 1.39867 * 126.04038 * 90.02567 * 19 18 16 21 21 N 1.30844 * 108.19983 * 179.97438 * 20 19 18 22 22 N 1.40078 * 108.20328 * 359.97438 * 21 20 19 23 23 C 1.46509 * 126.03451 * 180.02562 * 22 21 20 24 24 C 1.34948 * 107.93164 * 359.76082 * 22 21 20 25 25 C 1.47852 * 110.99844 * 301.63698 * 13 2 1 26 26 H 1.08998 * 109.47124 * 66.99710 * 1 2 3 27 27 H 1.09002 * 109.46658 * 186.99842 * 1 2 3 28 28 H 1.08995 * 109.46788 * 306.99097 * 1 2 3 29 29 H 1.08997 * 109.47123 * 303.20136 * 4 2 1 30 30 H 1.09001 * 109.46933 * 63.20731 * 4 2 1 31 31 H 0.96999 * 120.00568 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.88330 * 117.34134 * 14 13 2 33 33 H 1.08998 * 110.02361 * 356.22670 * 14 13 2 34 34 H 1.09000 * 110.70051 * 96.10073 * 15 14 13 35 35 H 1.08995 * 110.70090 * 219.16083 * 15 14 13 36 36 H 1.08999 * 109.46994 * 186.45055 * 18 16 15 37 37 H 1.08993 * 109.47062 * 306.45248 * 18 16 15 38 38 H 1.07994 * 125.90143 * 359.97438 * 20 19 18 39 39 H 1.08996 * 109.46684 * 90.02979 * 23 22 21 40 40 H 1.08998 * 109.46710 * 210.02567 * 23 22 21 41 41 H 1.08997 * 109.46891 * 330.02578 * 23 22 21 42 42 H 1.08000 * 126.12999 * 180.23572 * 24 22 21 43 43 H 1.09001 * 110.36875 * 265.18788 * 25 13 2 44 44 H 1.09001 * 110.37223 * 27.52868 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5450 -0.6528 1.2895 6 1 4.0879 -0.2149 0.4650 7 6 4.2288 -1.1492 2.3791 8 7 3.5677 -1.6828 3.3830 9 14 6.0941 -1.0638 2.4292 10 1 6.5939 -0.4217 1.1871 11 1 6.5216 -0.2646 3.6056 12 1 6.6498 -2.4369 2.5354 13 7 2.0197 -0.6924 -1.1994 14 6 1.5961 0.0097 -2.4249 15 6 0.8120 -1.0040 -3.2847 16 6 1.3206 -2.3751 -2.7668 17 1 2.2669 -2.6433 -3.2366 18 6 0.2724 -3.4675 -2.9878 19 6 0.0904 -3.6973 -4.4661 20 6 0.8044 -4.6084 -5.2512 21 7 0.3653 -4.5203 -6.4807 22 7 -0.6438 -3.5494 -6.5164 23 6 -1.4028 -3.1384 -7.7003 24 6 -0.7973 -3.0635 -5.2669 25 6 1.5137 -2.0806 -1.2535 26 1 -0.3633 0.4016 -0.9459 27 1 -0.3633 -1.0201 0.1252 28 1 -0.3633 0.6183 0.8208 29 1 1.6306 -0.2415 2.1383 30 1 1.7244 -1.7641 1.2210 31 1 4.0487 -2.0324 4.1494 32 1 2.4709 0.3614 -2.9718 33 1 0.9550 0.8532 -2.1690 34 1 -0.2603 -0.9026 -3.1178 35 1 1.0499 -0.8786 -4.3409 36 1 0.6052 -4.3914 -2.5148 37 1 -0.6754 -3.1556 -2.5491 38 1 1.5834 -5.2702 -4.9029 39 1 -2.2939 -3.7591 -7.7939 40 1 -1.6967 -2.0937 -7.5988 41 1 -0.7825 -3.2567 -8.5887 42 1 -1.5006 -2.3029 -4.9613 43 1 2.2431 -2.7673 -0.8238 44 1 0.5622 -2.1584 -0.7275 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:17 Heat of formation + Delta-G solvation = 54.361575 kcal Electronic energy + Delta-G solvation = -21795.758275 eV Core-core repulsion = 18748.623074 eV Total energy + Delta-G solvation = -3047.135201 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.08943 -40.36532 -36.35293 -34.77547 -33.90061 -32.51048 -30.31486 -29.53317 -29.13146 -27.95122 -25.69114 -25.08346 -22.70879 -22.06696 -21.50311 -20.68478 -20.11747 -18.33744 -17.57923 -16.79654 -16.70481 -16.35901 -16.14675 -15.37038 -15.23807 -14.92814 -14.28456 -14.17219 -14.13990 -13.95228 -13.67343 -13.36831 -13.26221 -13.24391 -13.11028 -12.76246 -12.64179 -12.53434 -12.39776 -12.23069 -11.88703 -11.69246 -11.44959 -11.37558 -11.20895 -11.08128 -10.95157 -10.47262 -10.29634 -9.19926 -8.79113 -8.08768 -6.13383 1.02074 1.41276 1.42463 1.55935 1.77123 1.89985 2.48576 3.22618 3.37662 3.69260 3.83818 3.94578 4.07043 4.16816 4.28791 4.37798 4.46735 4.47451 4.53846 4.57324 4.61015 4.66620 4.71988 4.73005 4.83377 4.95846 4.99905 5.03365 5.07594 5.14858 5.22641 5.23231 5.28702 5.36925 5.49089 5.50689 5.61143 5.76677 5.78123 5.92871 6.22868 6.38118 6.47066 6.62639 6.79906 7.01667 7.52771 9.03383 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026916 B = 0.003665 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.018021 B = 7638.663866 C = 8085.953924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.089 3.911 3 H 0.058 0.942 4 C 0.037 3.963 5 C -0.500 4.500 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.955 3.045 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.531 5.531 14 C 0.036 3.964 15 C -0.113 4.113 16 C -0.079 4.079 17 H 0.065 0.935 18 C -0.021 4.021 19 C -0.238 4.238 20 C 0.038 3.962 21 N -0.338 5.338 22 N -0.383 5.383 23 C 0.094 3.906 24 C 0.062 3.938 25 C 0.054 3.946 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.054 0.946 29 H -0.008 1.008 30 H -0.006 1.006 31 H 0.258 0.742 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.188 0.812 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.201 0.799 43 H 0.042 0.958 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.053 -0.791 -20.657 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 H 0.076 0.924 4 C 0.000 4.000 5 C -0.538 4.538 6 H 0.074 0.926 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.781 3.219 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.254 5.254 14 C -0.092 4.092 15 C -0.151 4.151 16 C -0.098 4.098 17 H 0.084 0.916 18 C -0.060 4.060 19 C -0.250 4.250 20 C -0.147 4.147 21 N -0.161 5.161 22 N -0.166 5.166 23 C -0.046 4.046 24 C -0.084 4.084 25 C -0.073 4.073 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.010 0.990 30 H 0.012 0.988 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.205 0.795 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.218 0.782 43 H 0.061 0.939 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.450 -1.231 -21.825 25.157 hybrid contribution 0.362 0.134 1.480 1.530 sum -12.088 -1.097 -20.345 23.690 Atomic orbital electron populations 1.22401 0.96887 1.01704 1.02096 1.21740 0.92304 0.97003 0.90937 0.92384 1.19030 0.95157 0.94158 0.91703 1.21550 0.93234 1.36731 1.02288 0.92552 1.25851 1.02837 0.95782 0.95666 1.70094 1.36889 1.42620 1.08628 0.85537 0.80793 0.77596 0.77932 1.19146 1.20708 1.20848 1.63524 1.58259 1.02150 1.01497 1.22872 0.98311 0.97122 0.90862 1.22668 0.99876 0.93319 0.99251 1.22273 0.98730 0.95383 0.93426 0.91627 1.19706 0.98359 0.97893 0.90010 1.20109 1.03231 1.04153 0.97459 1.24093 1.00370 0.99766 0.90435 1.77267 1.06160 1.10892 1.21748 1.48785 1.29045 1.29977 1.08769 1.22155 0.95359 1.02468 0.84660 1.22762 1.00963 1.00341 0.84369 1.23024 0.97873 0.90026 0.96424 0.90964 0.92831 0.92645 0.98961 0.98776 0.93278 0.92125 0.92214 0.90149 0.90746 0.91355 0.90477 0.79475 0.89705 0.86840 0.89476 0.78245 0.93901 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.59 8.55 71.98 0.62 -4.98 16 2 C 0.09 3.65 2.18 44.92 0.10 3.75 16 3 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 4 C 0.04 1.94 4.33 29.85 0.13 2.07 16 5 C -0.50 -29.05 8.81 25.60 0.23 -28.82 16 6 H 0.06 3.29 7.70 -2.91 -0.02 3.27 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 8 N -0.94 -58.44 13.29 21.45 0.28 -58.15 16 9 Si 0.96 46.44 29.54 68.60 2.03 48.46 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 N -0.53 -20.16 4.82 -859.32 -4.14 -24.30 16 14 C 0.04 1.04 6.24 86.65 0.54 1.58 16 15 C -0.11 -2.53 5.68 31.78 0.18 -2.35 16 16 C -0.08 -2.06 3.08 -9.24 -0.03 -2.08 16 17 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 18 C -0.02 -0.45 5.24 29.85 0.16 -0.29 16 19 C -0.24 -4.94 5.01 -20.14 -0.10 -5.04 16 20 C 0.04 0.89 11.96 85.23 1.02 1.90 16 21 N -0.34 -8.32 12.58 -57.03 -0.72 -9.04 16 22 N -0.38 -7.06 4.01 -369.55 -1.48 -8.54 16 23 C 0.09 0.85 11.47 127.77 1.47 2.32 16 24 C 0.06 1.05 11.06 83.54 0.92 1.98 16 25 C 0.05 1.89 4.65 86.94 0.40 2.30 16 26 H 0.07 1.91 6.32 -2.39 -0.02 1.90 16 27 H 0.05 1.74 6.23 -2.39 -0.01 1.73 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H -0.01 -0.34 7.07 -2.39 -0.02 -0.36 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 1.59 6.23 -2.39 -0.01 1.58 16 34 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.49 8.11 -2.39 -0.02 1.47 16 38 H 0.19 3.72 8.06 -2.91 -0.02 3.70 16 39 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 44 H 0.05 1.69 5.38 -2.39 -0.01 1.68 16 Total: -1.00 -72.68 348.26 3.02 -69.66 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.95 Total: 9.44 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 6.09 Total: -27.54 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -6.05 Total: -100.03 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.68 3.02 -69.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.025 kcal (2) G-P(sol) polarization free energy of solvation -72.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds