Wall clock time and date at job start Mon Mar 30 2020 02:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47354 * 2 1 4 4 C 1.53002 * 109.47029 * 120.00089 * 2 1 3 5 5 C 1.50701 * 109.46653 * 294.55743 * 4 2 1 6 6 H 1.07998 * 120.00340 * 3.71337 * 5 4 2 7 7 C 1.37884 * 119.99859 * 183.71894 * 5 4 2 8 8 N 1.31514 * 119.99835 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46868 * 59.99975 * 9 7 5 11 11 H 1.48501 * 109.47097 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47348 * 299.99825 * 9 7 5 13 13 N 1.46896 * 109.47160 * 239.99718 * 2 1 3 14 14 C 1.48533 * 111.00375 * 178.35727 * 13 2 1 15 15 C 1.55093 * 103.28919 * 200.33267 * 14 13 2 16 16 C 1.54601 * 102.84514 * 37.30742 * 15 14 13 17 17 H 1.08994 * 110.31073 * 97.11746 * 16 15 14 18 18 C 1.52999 * 110.30845 * 219.18889 * 16 15 14 19 19 C 1.50701 * 109.46868 * 292.20235 * 18 16 15 20 20 C 1.39861 * 126.04465 * 269.69484 * 19 18 16 21 21 N 1.30840 * 108.20590 * 179.81980 * 20 19 18 22 22 N 1.40083 * 108.20099 * 0.43758 * 21 20 19 23 23 C 1.46504 * 126.03387 * 179.74078 * 22 21 20 24 24 C 1.34947 * 107.93002 * 359.71971 * 22 21 20 25 25 C 1.47904 * 111.00195 * 60.96081 * 13 2 1 26 26 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47335 * 300.00316 * 1 2 3 28 28 H 1.08997 * 109.46858 * 60.00104 * 1 2 3 29 29 H 1.09002 * 109.47016 * 54.55086 * 4 2 1 30 30 H 1.08998 * 109.47185 * 174.55759 * 4 2 1 31 31 H 0.97003 * 120.00040 * 180.02562 * 8 7 5 32 32 H 1.09005 * 110.66276 * 318.71723 * 14 13 2 33 33 H 1.09005 * 110.66834 * 81.67168 * 14 13 2 34 34 H 1.08995 * 110.71319 * 278.99919 * 15 14 13 35 35 H 1.09001 * 110.81639 * 155.66073 * 15 14 13 36 36 H 1.08998 * 109.46849 * 172.20965 * 18 16 15 37 37 H 1.08999 * 109.47384 * 52.20698 * 18 16 15 38 38 H 1.07998 * 125.89635 * 359.97438 * 20 19 18 39 39 H 1.08997 * 109.47171 * 269.96897 * 23 22 21 40 40 H 1.09002 * 109.47228 * 29.97555 * 23 22 21 41 41 H 1.09002 * 109.46908 * 149.97525 * 23 22 21 42 42 H 1.07994 * 126.12876 * 179.97438 * 24 22 21 43 43 H 1.09004 * 109.91436 * 26.49352 * 25 13 2 44 44 H 1.09004 * 109.91733 * 265.19969 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6507 0.0627 2.4760 6 1 1.0440 0.9510 2.3792 7 6 2.0690 -0.3539 3.7220 8 7 2.8075 -1.4358 3.8399 9 14 1.5871 0.6182 5.2425 10 1 0.1069 0.6582 5.3558 11 1 2.1580 -0.0337 6.4484 12 1 2.1126 2.0027 5.1321 13 7 2.0197 -0.6925 -1.1994 14 6 3.5039 -0.6781 -1.2538 15 6 3.8084 -0.9431 -2.7513 16 6 2.6857 -0.1633 -3.4735 17 1 3.0472 0.8156 -3.7883 18 6 2.1810 -0.9556 -4.6811 19 6 3.2633 -1.0196 -5.7279 20 6 3.4594 -0.1030 -6.7659 21 7 4.4962 -0.4910 -7.4634 22 7 4.9872 -1.6741 -6.8962 23 6 6.1377 -2.4456 -7.3730 24 6 4.2136 -1.9773 -5.8329 25 6 1.5645 -0.0087 -2.4293 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.5992 -1.7169 1.2993 30 1 3.1256 -0.8065 1.2019 31 1 3.1015 -1.7292 4.7165 32 1 3.8905 0.2949 -0.9503 33 1 3.9196 -1.4679 -0.6280 34 1 3.7439 -2.0079 -2.9752 35 1 4.7878 -0.5494 -3.0231 36 1 1.3020 -0.4633 -5.0971 37 1 1.9176 -1.9661 -4.3685 38 1 2.8602 0.7749 -6.9571 39 1 5.8028 -3.1863 -8.0991 40 1 6.8557 -1.7740 -7.8437 41 1 6.6107 -2.9506 -6.5307 42 1 4.3314 -2.8314 -5.1827 43 1 1.3912 1.0477 -2.2243 44 1 0.6491 -0.4737 -2.7956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:20 Heat of formation + Delta-G solvation = 67.584274 kcal Electronic energy + Delta-G solvation = -21411.541641 eV Core-core repulsion = 18364.979819 eV Total energy + Delta-G solvation = -3046.561822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32459 -38.83905 -35.14728 -33.53896 -32.52310 -31.32604 -29.32669 -28.71808 -27.23434 -26.54961 -24.82879 -23.07494 -21.53386 -21.06923 -20.44358 -19.60859 -18.99178 -16.89018 -16.50579 -15.63170 -15.41799 -14.91959 -14.56924 -14.43236 -13.78722 -13.71932 -13.48070 -13.19899 -12.97154 -12.78110 -12.50757 -12.35508 -12.06862 -11.77947 -11.67498 -11.36543 -11.04872 -10.83540 -10.78354 -10.62224 -10.49790 -10.44824 -10.32978 -10.25490 -9.83294 -9.54191 -9.13267 -9.05295 -8.40487 -8.30458 -7.68948 -5.96424 -3.97836 1.77002 2.38434 2.70886 3.34814 3.39260 3.41535 4.33699 4.45383 4.68560 4.72580 4.85581 4.88060 4.95124 5.05913 5.10622 5.16699 5.39360 5.42242 5.45734 5.70476 5.72144 5.77154 5.96563 6.00135 6.04196 6.08456 6.15453 6.20189 6.29363 6.37386 6.42197 6.51474 6.56376 6.60084 6.72961 6.87890 6.98005 7.15776 7.56929 7.58149 7.62045 7.83330 7.92385 8.13074 8.48533 9.08552 9.65083 11.15005 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037886 B = 0.003064 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.874139 B = 9137.338313 C = 9601.987194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.076 3.924 3 H 0.027 0.973 4 C 0.034 3.966 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.512 5.512 14 C 0.040 3.960 15 C -0.112 4.112 16 C -0.092 4.092 17 H 0.068 0.932 18 C -0.030 4.030 19 C -0.226 4.226 20 C 0.050 3.950 21 N -0.304 5.304 22 N -0.381 5.381 23 C 0.103 3.897 24 C 0.057 3.943 25 C 0.040 3.960 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.021 0.979 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.180 0.820 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.172 0.828 43 H 0.037 0.963 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 -1.267 -21.060 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.031 4.031 3 H 0.045 0.955 4 C -0.003 4.003 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.237 5.237 14 C -0.088 4.088 15 C -0.150 4.150 16 C -0.111 4.111 17 H 0.086 0.914 18 C -0.068 4.068 19 C -0.237 4.237 20 C -0.136 4.136 21 N -0.125 5.125 22 N -0.163 5.163 23 C -0.039 4.039 24 C -0.089 4.089 25 C -0.088 4.088 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.197 0.803 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.189 0.811 43 H 0.055 0.945 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.135 -1.748 -21.940 22.395 hybrid contribution -0.344 1.172 1.656 2.058 sum 3.791 -0.576 -20.284 20.643 Atomic orbital electron populations 1.21724 0.95445 1.01486 1.00011 1.22022 0.95003 0.95233 0.90849 0.95487 1.19110 0.96392 0.95693 0.89141 1.21193 1.32274 1.10663 0.91466 0.92766 1.24988 0.95241 0.95131 0.98976 1.69961 1.36233 1.23439 1.23749 0.86696 0.78822 0.80162 0.82534 1.20248 1.21336 1.20362 1.64850 1.07032 1.50209 1.01602 1.23161 0.89389 1.00651 0.95577 1.22546 0.97328 1.00197 0.94956 1.22013 0.95793 0.98791 0.94503 0.91353 1.19972 0.94341 1.00835 0.91684 1.20154 1.03062 0.98318 1.02183 1.23795 0.95705 1.00015 0.94087 1.77312 1.14161 0.98555 1.22490 1.48427 1.25053 1.19838 1.23007 1.21822 0.85894 0.95177 1.00994 1.22377 0.93392 1.01027 0.92103 1.22901 0.97850 0.97010 0.91073 0.92755 0.91754 0.95059 0.96110 0.96260 0.93026 0.94324 0.89938 0.91240 0.92174 0.91353 0.90939 0.80287 0.90947 0.89492 0.89481 0.81077 0.94474 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.92 37.16 0.33 -2.18 16 2 C 0.08 1.63 1.77 -67.71 -0.12 1.51 16 3 H 0.03 0.60 8.00 -51.93 -0.42 0.18 16 4 C 0.03 0.89 4.46 -27.88 -0.12 0.76 16 5 C -0.52 -14.55 8.48 -34.44 -0.29 -14.84 16 6 H 0.05 1.48 6.95 -52.49 -0.37 1.12 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.51 -9.38 5.11 -222.39 -1.14 -10.52 16 14 C 0.04 0.69 5.49 -1.81 -0.01 0.68 16 15 C -0.11 -1.49 5.90 -24.78 -0.15 -1.64 16 16 C -0.09 -1.14 3.00 -89.26 -0.27 -1.41 16 17 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.03 -0.31 4.86 -27.88 -0.14 -0.45 16 19 C -0.23 -2.43 5.03 -105.05 -0.53 -2.96 16 20 C 0.05 0.55 11.96 -17.37 -0.21 0.35 16 21 N -0.30 -3.74 12.58 30.62 0.39 -3.36 16 22 N -0.38 -3.91 4.01 -68.16 -0.27 -4.18 16 23 C 0.10 0.62 11.47 59.85 0.69 1.31 16 24 C 0.06 0.56 11.02 -17.22 -0.19 0.37 16 25 C 0.04 0.59 5.09 -2.75 -0.01 0.58 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.31 6.90 -51.93 -0.36 0.95 16 28 H 0.03 0.52 7.11 -51.93 -0.37 0.15 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.53 6.71 -51.93 -0.35 0.18 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.04 0.70 7.98 -51.93 -0.41 0.28 16 33 H 0.08 1.54 7.53 -51.93 -0.39 1.15 16 34 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.78 8.03 -51.93 -0.42 0.37 16 38 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.04 0.57 7.56 -51.93 -0.39 0.17 16 44 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -32.46 350.53 -8.78 -41.23 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.64 Total: -2.60 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.11 Total: -16.36 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.29 Total: -44.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.46 -8.78 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.818 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds