Wall clock time and date at job start Mon Mar 30 2020 02:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47354 * 2 1 4 4 C 1.53002 * 109.47029 * 120.00089 * 2 1 3 5 5 C 1.50701 * 109.46653 * 294.55743 * 4 2 1 6 6 H 1.07998 * 120.00340 * 3.71337 * 5 4 2 7 7 C 1.37884 * 119.99859 * 183.71894 * 5 4 2 8 8 N 1.31514 * 119.99835 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46868 * 59.99975 * 9 7 5 11 11 H 1.48501 * 109.47097 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47348 * 299.99825 * 9 7 5 13 13 N 1.46896 * 109.47160 * 239.99718 * 2 1 3 14 14 C 1.48533 * 111.00375 * 178.35727 * 13 2 1 15 15 C 1.55093 * 103.28919 * 200.33267 * 14 13 2 16 16 C 1.54601 * 102.84514 * 37.30742 * 15 14 13 17 17 H 1.08994 * 110.31073 * 97.11746 * 16 15 14 18 18 C 1.52999 * 110.30845 * 219.18889 * 16 15 14 19 19 C 1.50701 * 109.46868 * 292.20235 * 18 16 15 20 20 C 1.39861 * 126.04465 * 269.69484 * 19 18 16 21 21 N 1.30840 * 108.20590 * 179.81980 * 20 19 18 22 22 N 1.40083 * 108.20099 * 0.43758 * 21 20 19 23 23 C 1.46504 * 126.03387 * 179.74078 * 22 21 20 24 24 C 1.34947 * 107.93002 * 359.71971 * 22 21 20 25 25 C 1.47904 * 111.00195 * 60.96081 * 13 2 1 26 26 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47335 * 300.00316 * 1 2 3 28 28 H 1.08997 * 109.46858 * 60.00104 * 1 2 3 29 29 H 1.09002 * 109.47016 * 54.55086 * 4 2 1 30 30 H 1.08998 * 109.47185 * 174.55759 * 4 2 1 31 31 H 0.97003 * 120.00040 * 180.02562 * 8 7 5 32 32 H 1.09005 * 110.66276 * 318.71723 * 14 13 2 33 33 H 1.09005 * 110.66834 * 81.67168 * 14 13 2 34 34 H 1.08995 * 110.71319 * 278.99919 * 15 14 13 35 35 H 1.09001 * 110.81639 * 155.66073 * 15 14 13 36 36 H 1.08998 * 109.46849 * 172.20965 * 18 16 15 37 37 H 1.08999 * 109.47384 * 52.20698 * 18 16 15 38 38 H 1.07998 * 125.89635 * 359.97438 * 20 19 18 39 39 H 1.08997 * 109.47171 * 269.96897 * 23 22 21 40 40 H 1.09002 * 109.47228 * 29.97555 * 23 22 21 41 41 H 1.09002 * 109.46908 * 149.97525 * 23 22 21 42 42 H 1.07994 * 126.12876 * 179.97438 * 24 22 21 43 43 H 1.09004 * 109.91436 * 26.49352 * 25 13 2 44 44 H 1.09004 * 109.91733 * 265.19969 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6507 0.0627 2.4760 6 1 1.0440 0.9510 2.3792 7 6 2.0690 -0.3539 3.7220 8 7 2.8075 -1.4358 3.8399 9 14 1.5871 0.6182 5.2425 10 1 0.1069 0.6582 5.3558 11 1 2.1580 -0.0337 6.4484 12 1 2.1126 2.0027 5.1321 13 7 2.0197 -0.6925 -1.1994 14 6 3.5039 -0.6781 -1.2538 15 6 3.8084 -0.9431 -2.7513 16 6 2.6857 -0.1633 -3.4735 17 1 3.0472 0.8156 -3.7883 18 6 2.1810 -0.9556 -4.6811 19 6 3.2633 -1.0196 -5.7279 20 6 3.4594 -0.1030 -6.7659 21 7 4.4962 -0.4910 -7.4634 22 7 4.9872 -1.6741 -6.8962 23 6 6.1377 -2.4456 -7.3730 24 6 4.2136 -1.9773 -5.8329 25 6 1.5645 -0.0087 -2.4293 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.5992 -1.7169 1.2993 30 1 3.1256 -0.8065 1.2019 31 1 3.1015 -1.7292 4.7165 32 1 3.8905 0.2949 -0.9503 33 1 3.9196 -1.4679 -0.6280 34 1 3.7439 -2.0079 -2.9752 35 1 4.7878 -0.5494 -3.0231 36 1 1.3020 -0.4633 -5.0971 37 1 1.9176 -1.9661 -4.3685 38 1 2.8602 0.7749 -6.9571 39 1 5.8028 -3.1863 -8.0991 40 1 6.8557 -1.7740 -7.8437 41 1 6.6107 -2.9506 -6.5307 42 1 4.3314 -2.8314 -5.1827 43 1 1.3912 1.0477 -2.2243 44 1 0.6491 -0.4737 -2.7956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:19 Heat of formation + Delta-G solvation = 47.388771 kcal Electronic energy + Delta-G solvation = -21412.417383 eV Core-core repulsion = 18364.979819 eV Total energy + Delta-G solvation = -3047.437565 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07908 -40.17238 -36.59601 -34.82097 -33.95595 -32.57536 -30.40443 -30.17679 -28.35225 -27.98970 -25.98562 -24.78123 -22.85337 -21.95951 -21.32353 -20.81517 -20.42505 -18.61345 -17.61292 -16.83902 -16.61807 -16.26714 -16.06923 -15.29808 -15.28578 -14.85978 -14.64521 -14.14266 -14.06863 -13.97843 -13.67764 -13.58462 -13.27184 -13.14183 -12.96190 -12.82251 -12.72600 -12.65341 -12.28552 -12.22102 -11.81529 -11.69038 -11.56678 -11.46857 -11.30945 -11.10689 -10.99489 -10.51843 -10.29501 -9.20107 -9.15838 -8.17254 -6.27063 1.02980 1.40102 1.43034 1.50676 1.77031 1.92450 2.41599 3.15843 3.25213 3.70816 3.81518 3.88544 4.07267 4.13280 4.34610 4.39678 4.44011 4.45801 4.47345 4.59786 4.61728 4.70261 4.71028 4.71795 4.84382 4.92355 5.00114 5.09472 5.10715 5.13073 5.15202 5.24781 5.29189 5.42167 5.45881 5.50891 5.55034 5.72765 5.81376 5.82308 6.12486 6.21829 6.29156 6.42528 6.81390 6.89141 7.41023 8.94783 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037886 B = 0.003064 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.874139 B = 9137.338313 C = 9601.987194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.086 3.914 3 H 0.017 0.983 4 C 0.044 3.956 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.522 5.522 14 C 0.036 3.964 15 C -0.098 4.098 16 C -0.081 4.081 17 H 0.072 0.928 18 C -0.019 4.019 19 C -0.240 4.240 20 C 0.042 3.958 21 N -0.339 5.339 22 N -0.385 5.385 23 C 0.093 3.907 24 C 0.057 3.943 25 C 0.039 3.961 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.064 0.936 29 H -0.011 1.011 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.023 0.977 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.196 0.804 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.193 0.807 43 H 0.036 0.964 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -0.767 -22.117 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.022 4.022 3 H 0.035 0.965 4 C 0.007 3.993 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.194 1.194 13 N -0.247 5.247 14 C -0.092 4.092 15 C -0.136 4.136 16 C -0.100 4.100 17 H 0.090 0.910 18 C -0.057 4.057 19 C -0.252 4.252 20 C -0.143 4.143 21 N -0.162 5.162 22 N -0.167 5.167 23 C -0.047 4.047 24 C -0.090 4.090 25 C -0.088 4.088 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.213 0.787 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.127 0.873 42 H 0.210 0.790 43 H 0.054 0.946 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.513 -1.242 -23.029 23.328 hybrid contribution -0.088 0.958 1.950 2.174 sum 3.425 -0.285 -21.079 21.358 Atomic orbital electron populations 1.21625 0.93776 1.01425 1.01013 1.21734 0.96242 0.93944 0.90284 0.96525 1.18920 0.94412 0.94458 0.91532 1.21594 1.32261 1.10979 0.92491 0.92144 1.25933 0.95076 0.96145 1.02548 1.70105 1.37390 1.25167 1.24650 0.85555 0.78945 0.78749 0.78127 1.19071 1.20934 1.19354 1.64781 1.07599 1.50417 1.01878 1.23148 0.88902 0.98959 0.98203 1.22470 0.98256 1.01212 0.91672 1.21938 0.94371 0.99242 0.94455 0.90955 1.19852 0.94704 1.00531 0.90633 1.20214 1.03637 0.98832 1.02473 1.24149 0.95562 1.00603 0.93979 1.77259 1.15158 0.99979 1.23783 1.48767 1.25645 1.19452 1.22871 1.22132 0.84999 0.95217 1.02325 1.22789 0.92879 1.01314 0.92003 1.23006 0.99278 0.96670 0.89885 0.93292 0.93025 0.91717 0.99301 0.99078 0.92891 0.95835 0.92468 0.90084 0.91186 0.90045 0.90899 0.78711 0.89660 0.89388 0.87264 0.78970 0.94599 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.61 8.92 71.98 0.64 -3.97 16 2 C 0.09 3.71 1.77 44.92 0.08 3.79 16 3 H 0.02 0.75 8.00 -2.39 -0.02 0.73 16 4 C 0.04 2.40 4.46 29.85 0.13 2.53 16 5 C -0.53 -30.69 8.48 25.60 0.22 -30.47 16 6 H 0.06 3.32 6.95 -2.91 -0.02 3.30 16 7 C 0.00 0.04 5.46 84.66 0.46 0.50 16 8 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 9 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 N -0.52 -19.05 5.11 -857.51 -4.38 -23.43 16 14 C 0.04 1.26 5.49 86.70 0.48 1.74 16 15 C -0.10 -2.47 5.90 31.86 0.19 -2.28 16 16 C -0.08 -1.83 3.00 -9.91 -0.03 -1.86 16 17 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 18 C -0.02 -0.34 4.86 29.85 0.14 -0.20 16 19 C -0.24 -4.61 5.03 -20.14 -0.10 -4.71 16 20 C 0.04 0.86 11.96 85.23 1.02 1.88 16 21 N -0.34 -7.93 12.58 -57.03 -0.72 -8.65 16 22 N -0.38 -7.19 4.01 -369.55 -1.48 -8.67 16 23 C 0.09 0.95 11.47 127.77 1.47 2.41 16 24 C 0.06 0.99 11.02 83.54 0.92 1.91 16 25 C 0.04 1.09 5.09 86.45 0.44 1.53 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 2.07 6.90 -2.39 -0.02 2.06 16 28 H 0.06 2.02 7.11 -2.39 -0.02 2.00 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H -0.01 -0.54 6.71 -2.39 -0.02 -0.56 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.02 0.88 7.98 -2.38 -0.02 0.86 16 33 H 0.06 2.25 7.53 -2.38 -0.02 2.24 16 34 H 0.08 1.86 7.77 -2.39 -0.02 1.85 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.36 8.03 -2.39 -0.02 1.34 16 38 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 43 H 0.04 1.02 7.56 -2.38 -0.02 1.00 16 44 H 0.09 2.19 7.68 -2.38 -0.02 2.18 16 Total: -1.00 -71.31 350.53 2.74 -68.57 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.95 Total: 9.91 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 6.06 Total: -27.18 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -6.30 Total: -98.02 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.31 2.74 -68.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.960 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds