Wall clock time and date at job start Mon Mar 30 2020 01:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46797 * 2 1 4 4 C 1.53001 * 109.46716 * 119.99483 * 2 1 3 5 5 N 1.46501 * 109.46761 * 173.50772 * 4 2 1 6 6 N 1.40092 * 126.04024 * 277.04867 * 5 4 2 7 7 C 1.30837 * 108.20230 * 180.16870 * 6 5 4 8 8 C 1.39868 * 108.20728 * 359.58682 * 7 6 5 9 9 C 1.34947 * 126.03652 * 96.75693 * 5 4 2 10 10 C 1.50696 * 126.12976 * 0.03620 * 9 5 4 11 11 N 1.46907 * 109.47014 * 86.18379 * 10 9 5 12 12 C 1.46896 * 110.99864 * 184.59234 * 11 10 9 13 13 C 1.53007 * 109.47261 * 186.12544 * 12 11 10 14 14 C 1.50697 * 115.55416 * 184.49080 * 13 12 11 15 15 H 1.07992 * 120.00296 * 145.16275 * 14 13 12 16 16 C 1.37881 * 119.99644 * 325.16285 * 14 13 12 17 17 N 1.31512 * 119.99955 * 167.15368 * 16 14 13 18 18 Si 1.86796 * 120.00289 * 347.15417 * 16 14 13 19 19 H 1.48504 * 109.47251 * 95.54837 * 18 16 14 20 20 H 1.48494 * 109.47394 * 215.55225 * 18 16 14 21 21 H 1.48506 * 109.47151 * 335.55495 * 18 16 14 22 22 C 1.52997 * 117.49601 * 38.81628 * 13 12 11 23 23 C 1.53001 * 117.49503 * 330.16068 * 13 12 11 24 24 H 1.09000 * 109.47231 * 300.00273 * 1 2 3 25 25 H 1.09004 * 109.47033 * 60.00305 * 1 2 3 26 26 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47395 * 239.99982 * 2 1 3 28 28 H 1.09003 * 109.46694 * 296.01958 * 3 2 1 29 29 H 1.09001 * 109.47146 * 56.02296 * 3 2 1 30 30 H 1.09000 * 109.46895 * 176.02599 * 3 2 1 31 31 H 1.08997 * 109.47058 * 53.51565 * 4 2 1 32 32 H 1.08998 * 109.47596 * 293.50184 * 4 2 1 33 33 H 1.08003 * 125.89096 * 179.85191 * 7 6 5 34 34 H 1.07997 * 126.03614 * 180.28191 * 8 7 6 35 35 H 1.08999 * 109.47557 * 206.18797 * 10 9 5 36 36 H 1.08998 * 109.47066 * 326.19033 * 10 9 5 37 37 H 1.00889 * 111.00069 * 308.54939 * 11 10 9 38 38 H 1.09000 * 109.47817 * 306.12900 * 12 11 10 39 39 H 1.09009 * 109.47343 * 66.12908 * 12 11 10 40 40 H 0.96998 * 119.99911 * 185.00233 * 17 16 14 41 41 H 1.09007 * 117.49957 * 0.02562 * 22 13 12 42 42 H 1.08998 * 117.50176 * 145.02176 * 22 13 12 43 43 H 1.09000 * 117.49607 * 214.97899 * 23 13 12 44 44 H 1.09005 * 117.50149 * 359.97000 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4966 -0.8579 1.1738 6 7 4.1960 -1.8585 0.4867 7 6 5.4768 -1.6501 0.6536 8 6 5.6342 -0.5064 1.4432 9 6 4.4018 -0.0390 1.7494 10 6 4.0951 1.1775 2.5842 11 7 3.8912 0.7736 3.9818 12 6 3.4830 1.9186 4.8065 13 6 3.4288 1.4954 6.2758 14 6 2.9212 2.5409 7.2351 15 1 2.3340 2.2474 8.0926 16 6 3.2064 3.8723 7.0180 17 7 2.5663 4.8008 7.6945 18 14 4.5022 4.3573 5.7630 19 1 3.8455 4.6644 4.4669 20 1 5.2329 5.5571 6.2442 21 1 5.4582 3.2358 5.5798 22 6 4.5178 0.5452 6.7779 23 6 3.0887 0.0346 6.5781 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.7360 1.9353 -0.9236 29 1 1.6196 1.9765 0.8522 30 1 3.1276 1.4434 0.0712 31 1 1.5849 -1.7098 1.3093 32 1 1.7747 -0.1446 2.1355 33 1 6.2748 -2.2542 0.2477 34 1 6.5734 -0.0728 1.7534 35 1 4.9285 1.8776 2.5261 36 1 3.1909 1.6570 2.2091 37 1 3.2199 0.0233 4.0471 38 1 4.2039 2.7275 4.6877 39 1 2.4975 2.2611 4.4905 40 1 2.7139 5.7376 7.4912 41 1 5.2731 0.2219 6.0615 42 1 4.8669 0.6760 7.8021 43 1 2.4980 -0.1702 7.4710 44 1 2.9030 -0.6248 5.7302 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592366641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:41 Heat of formation + Delta-G solvation = 108.270482 kcal Electronic energy + Delta-G solvation = -22266.673261 eV Core-core repulsion = 19221.875726 eV Total energy + Delta-G solvation = -3044.797536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30822 -37.73714 -36.70029 -34.61254 -32.22901 -31.86716 -30.45791 -27.50976 -27.15493 -26.40186 -25.51625 -23.17253 -21.52140 -21.30484 -20.51515 -19.62847 -18.93448 -17.12759 -16.24998 -15.93351 -15.38530 -15.33043 -15.04143 -14.50167 -14.03135 -13.78486 -13.65506 -13.32464 -13.13812 -13.00276 -12.56773 -12.54356 -12.41090 -12.12357 -12.02204 -11.74249 -11.49679 -11.27601 -11.05128 -10.97552 -10.56848 -10.44712 -10.37914 -9.78572 -9.45528 -9.33784 -9.16482 -8.70278 -8.49397 -8.37042 -7.99923 -6.18831 -4.12380 1.86429 2.47737 2.89156 3.15181 3.33840 3.37377 4.29951 4.32889 4.44415 4.48794 4.70455 4.74875 4.79874 4.83676 5.06836 5.14844 5.25500 5.35343 5.37204 5.40332 5.54656 5.56880 5.64416 5.72557 5.78564 5.80883 5.85979 5.96108 5.99075 6.04216 6.10291 6.23799 6.28394 6.60631 6.68950 6.70650 6.90135 7.01813 7.08299 7.24386 7.31574 7.59825 7.75290 7.77535 8.47915 8.85523 9.43953 10.92399 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.005220 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.763496 B = 5362.844551 C = 5793.660039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.155 4.155 4 C 0.133 3.867 5 N -0.364 5.364 6 N -0.300 5.300 7 C 0.042 3.958 8 C -0.258 4.258 9 C 0.096 3.904 10 C 0.111 3.889 11 N -0.677 5.677 12 C 0.077 3.923 13 C 0.010 3.990 14 C -0.484 4.484 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.892 5.892 18 Si 0.885 3.115 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.252 1.252 22 C -0.192 4.192 23 C -0.190 4.190 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.180 0.820 34 H 0.146 0.854 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.337 0.663 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -8.769 -16.430 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.212 4.212 4 C 0.012 3.988 5 N -0.147 5.147 6 N -0.121 5.121 7 C -0.143 4.143 8 C -0.288 4.288 9 C -0.031 4.031 10 C -0.020 4.020 11 N -0.310 5.310 12 C -0.050 4.050 13 C 0.009 3.991 14 C -0.522 4.522 15 H 0.096 0.904 16 C -0.128 4.128 17 N -0.528 5.528 18 Si 0.716 3.284 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.177 1.177 22 C -0.230 4.230 23 C -0.228 4.228 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.197 0.803 34 H 0.163 0.837 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.001 -9.230 -16.695 19.077 hybrid contribution 0.392 0.960 -0.535 1.167 sum 0.394 -8.270 -17.231 19.116 Atomic orbital electron populations 1.21792 0.93735 1.02231 1.02627 1.21504 0.96475 0.96906 0.98076 1.21993 1.01552 0.95369 1.02294 1.21825 0.75209 1.02488 0.99296 1.48576 1.05873 1.20662 1.39617 1.77291 1.05725 1.10650 1.18466 1.23778 0.94083 0.97512 0.98939 1.21230 0.97419 1.01037 1.09099 1.20996 0.89953 0.94840 0.97326 1.20693 1.01749 0.91782 0.87728 1.60618 1.53109 1.11269 1.06003 1.22074 0.98059 0.91675 0.93207 1.19305 0.99132 0.89661 0.90992 1.20397 1.32893 0.89280 1.09589 0.90430 1.25005 0.95489 0.96390 0.95908 1.69884 1.40955 1.00720 1.41284 0.86973 0.83462 0.77493 0.80482 1.21202 1.22499 1.17716 1.23024 0.91247 1.07856 1.00872 1.22713 0.99832 0.98963 1.01254 0.92045 0.91949 0.92252 0.90245 0.92209 0.92132 0.92332 0.88851 0.89063 0.80313 0.83658 0.88785 0.93762 0.84398 0.91254 0.94579 0.92383 0.90129 0.90562 0.90492 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 2 C -0.11 -1.06 3.12 -90.61 -0.28 -1.34 16 3 C -0.15 -1.57 7.91 37.16 0.29 -1.28 16 4 C 0.13 1.45 5.60 -4.04 -0.02 1.43 16 5 N -0.36 -4.83 3.35 -57.14 -0.19 -5.02 16 6 N -0.30 -4.24 12.58 30.62 0.39 -3.86 16 7 C 0.04 0.53 12.02 -17.37 -0.21 0.33 16 8 C -0.26 -3.46 10.72 -40.01 -0.43 -3.89 16 9 C 0.10 1.34 5.25 -82.27 -0.43 0.91 16 10 C 0.11 1.62 5.27 -4.97 -0.03 1.59 16 11 N -0.68 -11.55 5.42 -115.05 -0.62 -12.17 16 12 C 0.08 1.59 4.40 -3.82 -0.02 1.57 16 13 C 0.01 0.24 1.86 -155.66 -0.29 -0.05 16 14 C -0.48 -13.35 9.58 -34.44 -0.33 -13.68 16 15 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 16 C 0.08 2.10 5.42 -17.82 -0.10 2.00 16 17 N -0.89 -26.47 13.95 55.43 0.77 -25.70 16 18 Si 0.88 21.22 24.19 -169.99 -4.11 17.11 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.25 -5.88 6.42 56.52 0.36 -5.52 16 22 C -0.19 -4.13 9.64 -26.70 -0.26 -4.39 16 23 C -0.19 -3.88 9.57 -26.70 -0.26 -4.13 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.62 7.53 -51.93 -0.39 0.23 16 30 H 0.06 0.67 6.12 -51.93 -0.32 0.36 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 0.98 7.43 -51.93 -0.39 0.60 16 33 H 0.18 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.04 0.61 5.46 -51.93 -0.28 0.32 16 37 H 0.34 5.46 6.82 -39.30 -0.27 5.19 16 38 H 0.07 1.52 2.53 -51.93 -0.13 1.39 16 39 H 0.04 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.27 7.39 8.32 -40.82 -0.34 7.05 16 41 H 0.08 1.67 7.74 -51.93 -0.40 1.26 16 42 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 43 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.07 1.25 6.37 -51.93 -0.33 0.92 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -30.24 343.58 -7.78 -38.02 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.18 Total: 8.18 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.01 Total: -21.74 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.34 Total: -46.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.11 Total: 17.11 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.24 -7.78 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592366641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.290 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds