Wall clock time and date at job start Mon Mar 30 2020 01:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 120.00096 * 2 1 4 4 N 1.46904 * 109.47335 * 126.07928 * 3 2 1 5 5 C 1.46899 * 110.99568 * 300.83959 * 4 3 2 6 6 C 1.50708 * 109.47084 * 288.59149 * 5 4 3 7 7 H 1.08000 * 119.99859 * 3.78445 * 6 5 4 8 8 C 1.37872 * 120.00208 * 183.77978 * 6 5 4 9 9 N 1.31510 * 120.00163 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99771 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47349 * 89.99945 * 10 8 6 12 12 H 1.48505 * 109.47212 * 209.99939 * 10 8 6 13 13 H 1.48500 * 109.47511 * 330.00051 * 10 8 6 14 14 C 1.46894 * 110.99590 * 64.78623 * 4 3 2 15 15 C 1.50707 * 109.46981 * 69.95929 * 14 4 3 16 16 C 1.35315 * 126.12458 * 266.28362 * 15 14 4 17 17 C 1.39866 * 107.91871 * 180.02562 * 16 15 14 18 18 N 1.30839 * 108.20548 * 359.74415 * 17 16 15 19 19 N 1.34951 * 126.12683 * 86.31412 * 15 14 4 20 20 C 1.46496 * 126.03767 * 359.95390 * 19 15 14 21 21 C 1.52991 * 109.47318 * 92.63297 * 20 19 15 22 22 C 1.52995 * 109.47584 * 184.96275 * 21 20 19 23 23 C 1.53001 * 109.47190 * 64.95763 * 21 20 19 24 24 H 1.07997 * 119.99802 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.99797 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.99959 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46848 * 6.07964 * 3 2 1 28 28 H 1.09001 * 109.47044 * 246.07985 * 3 2 1 29 29 H 1.09000 * 109.47809 * 48.59660 * 5 4 3 30 30 H 1.09005 * 109.47083 * 168.59708 * 5 4 3 31 31 H 0.97002 * 120.00247 * 180.02562 * 9 8 6 32 32 H 1.08994 * 109.47632 * 309.95471 * 14 4 3 33 33 H 1.09000 * 109.46985 * 189.95427 * 14 4 3 34 34 H 1.07997 * 126.04019 * 0.02729 * 16 15 14 35 35 H 1.08000 * 125.89744 * 179.97438 * 17 16 15 36 36 H 1.09005 * 109.47054 * 332.62757 * 20 19 15 37 37 H 1.09001 * 109.46842 * 212.63313 * 20 19 15 38 38 H 1.09011 * 109.47162 * 304.95934 * 21 20 19 39 39 H 1.09008 * 109.46771 * 299.99524 * 22 21 20 40 40 H 1.08995 * 109.47624 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47286 * 59.99447 * 22 21 20 42 42 H 1.08999 * 109.46981 * 60.00406 * 23 21 20 43 43 H 1.09005 * 109.46817 * 180.02562 * 23 21 20 44 44 H 1.09004 * 109.47058 * 299.99844 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0148 1.3214 1.1194 5 6 2.3195 1.1600 2.4033 6 6 1.5506 2.4170 2.7196 7 1 1.5260 3.2286 2.0075 8 6 0.8785 2.5308 3.9180 9 7 0.2071 3.6275 4.1938 10 14 0.9215 1.1273 5.1499 11 1 2.0767 1.3074 6.0655 12 1 -0.3377 1.1208 5.9372 13 1 1.0597 -0.1623 4.4266 14 6 4.0480 0.2915 0.9471 15 6 4.9570 0.6773 -0.1913 16 6 4.8284 0.2896 -1.4814 17 6 5.8739 0.8659 -2.2101 18 7 6.6008 1.5786 -1.3882 19 7 6.0452 1.4708 -0.1068 20 6 6.5524 2.1113 1.1092 21 6 7.5992 1.2074 1.7632 22 6 8.0386 1.8171 3.0959 23 6 8.8106 1.0774 0.8377 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3602 2.1307 0.1088 28 1 2.6061 1.4114 -0.9394 29 1 1.6298 0.3184 2.3399 30 1 3.0496 0.9729 3.1908 31 1 -0.2655 3.7077 5.0371 32 1 3.5743 -0.6649 0.7259 33 1 4.6309 0.2047 1.8641 34 1 4.0552 -0.3516 -1.8781 35 1 6.0487 0.7465 -3.2692 36 1 5.7287 2.2753 1.8041 37 1 7.0076 3.0681 0.8531 38 1 7.1689 0.2214 1.9392 39 1 8.4689 2.8031 2.9200 40 1 8.7847 1.1733 3.5616 41 1 7.1756 1.9097 3.7552 42 1 9.2409 2.0633 0.6619 43 1 9.5562 0.4330 1.3036 44 1 8.4975 0.6429 -0.1117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592514997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:50 Heat of formation + Delta-G solvation = 95.797608 kcal Electronic energy + Delta-G solvation = -22316.072687 eV Core-core repulsion = 19270.734287 eV Total energy + Delta-G solvation = -3045.338400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05467 -37.50165 -36.39641 -32.87148 -32.61216 -31.59659 -30.43428 -27.73814 -27.19404 -26.37773 -25.99937 -23.60588 -21.01471 -20.81890 -20.70575 -19.54361 -18.61083 -16.84111 -16.36939 -15.43607 -15.41932 -14.88800 -14.62812 -14.25376 -14.05381 -13.89224 -13.66131 -13.19688 -13.08709 -12.67130 -12.43056 -12.28882 -12.23167 -11.94229 -11.71839 -11.38217 -11.29598 -11.07438 -10.96623 -10.84545 -10.78659 -10.57126 -10.48746 -10.34769 -9.95546 -9.38323 -8.98609 -8.85016 -8.59164 -8.22413 -7.48686 -6.08223 -4.05129 2.14802 2.77233 2.78603 3.09339 3.23741 3.32467 3.33466 4.38141 4.67225 4.73534 4.75916 4.92478 5.03089 5.12529 5.25046 5.31823 5.43151 5.44969 5.50732 5.58049 5.66004 5.72459 5.78155 5.84434 5.86296 5.94586 6.00198 6.05066 6.07214 6.21428 6.26739 6.32890 6.41332 6.59007 6.73057 6.92539 6.93457 7.07998 7.23249 7.31720 7.51997 7.81434 7.90829 8.02768 8.60378 9.00703 9.53284 11.04961 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.006039 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.202286 B = 4635.553645 C = 5928.551000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.183 4.183 3 C 0.087 3.913 4 N -0.514 5.514 5 C 0.161 3.839 6 C -0.503 4.503 7 H 0.079 0.921 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.103 3.897 15 C 0.115 3.885 16 C -0.280 4.280 17 C 0.039 3.961 18 N -0.303 5.303 19 N -0.351 5.351 20 C 0.133 3.867 21 C -0.112 4.112 22 C -0.146 4.146 23 C -0.143 4.143 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.071 0.929 29 H -0.001 1.001 30 H 0.020 0.980 31 H 0.263 0.737 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.176 0.824 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.700 -7.981 -7.251 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.203 4.203 3 C -0.041 4.041 4 N -0.237 5.237 5 C 0.036 3.964 6 C -0.542 4.542 7 H 0.097 0.903 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.027 4.027 15 C -0.014 4.014 16 C -0.311 4.311 17 C -0.146 4.146 18 N -0.125 5.125 19 N -0.133 5.133 20 C 0.012 3.988 21 C -0.131 4.131 22 C -0.204 4.204 23 C -0.201 4.201 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.017 0.983 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.157 0.843 35 H 0.193 0.807 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.911 -6.578 -6.841 16.024 hybrid contribution -1.255 -2.078 0.695 2.525 sum 11.656 -8.656 -6.147 15.766 Atomic orbital electron populations 1.23767 0.96050 1.01372 1.00517 1.23534 0.96730 0.99707 1.00295 1.21323 0.94287 0.94603 0.93868 1.62260 1.13308 1.44216 1.03895 1.20240 0.92960 0.97762 0.85473 1.20942 1.29041 1.00738 1.03431 0.90250 1.24854 0.95128 0.95363 0.97786 1.69884 1.33304 1.26449 1.24217 0.86932 0.77739 0.83562 0.81951 1.20244 1.21198 1.19275 1.20731 0.92896 0.94824 0.94274 1.21051 0.89696 0.93813 0.96812 1.21152 1.04898 1.12522 0.92481 1.23676 0.94473 0.96938 0.99560 1.77269 1.22931 1.23870 0.88383 1.48493 1.20613 1.37310 1.06860 1.21882 0.98342 0.95877 0.82725 1.21514 0.96176 0.99635 0.95784 1.21777 1.01742 1.00964 0.95878 1.21811 0.96803 1.01794 0.99654 0.89597 0.88171 0.88557 0.89308 0.91033 0.98295 0.96222 0.92673 0.92599 0.90399 0.84251 0.80743 0.87575 0.89172 0.90946 0.92287 0.92258 0.91855 0.92626 0.93124 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 14.32 29.01 0.42 -2.51 16 2 C -0.18 -3.05 7.44 -36.03 -0.27 -3.31 16 3 C 0.09 1.59 5.50 -4.97 -0.03 1.57 16 4 N -0.51 -10.03 4.62 -238.96 -1.10 -11.13 16 5 C 0.16 3.67 3.64 -4.97 -0.02 3.65 16 6 C -0.50 -13.68 9.21 -34.44 -0.32 -14.00 16 7 H 0.08 2.38 7.58 -52.49 -0.40 1.99 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 10 Si 0.87 20.89 27.39 -169.99 -4.66 16.23 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.20 6.65 56.52 0.38 -5.82 16 14 C 0.10 1.66 4.77 -4.98 -0.02 1.64 16 15 C 0.12 1.80 5.84 -82.26 -0.48 1.32 16 16 C -0.28 -4.02 9.57 -40.01 -0.38 -4.41 16 17 C 0.04 0.53 12.03 -17.37 -0.21 0.33 16 18 N -0.30 -4.72 11.47 30.62 0.35 -4.37 16 19 N -0.35 -5.41 3.26 -57.14 -0.19 -5.59 16 20 C 0.13 1.82 5.54 -4.05 -0.02 1.80 16 21 C -0.11 -1.29 3.13 -90.63 -0.28 -1.57 16 22 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 23 C -0.14 -1.61 9.02 37.16 0.34 -1.27 16 24 H 0.09 1.23 8.06 -52.49 -0.42 0.80 16 25 H 0.10 1.72 7.84 -52.49 -0.41 1.30 16 26 H 0.10 1.47 6.71 -52.49 -0.35 1.12 16 27 H 0.09 1.84 6.84 -51.93 -0.36 1.49 16 28 H 0.07 1.23 6.41 -51.93 -0.33 0.90 16 29 H 0.00 -0.01 6.02 -51.93 -0.31 -0.33 16 30 H 0.02 0.45 6.99 -51.93 -0.36 0.08 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 0.85 6.23 -51.93 -0.32 0.53 16 33 H 0.08 1.22 7.48 -51.93 -0.39 0.83 16 34 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.11 1.58 7.62 -51.93 -0.40 1.18 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.81 6.83 -51.93 -0.35 0.45 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -30.07 352.24 -7.93 -37.99 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.38 Total: 3.75 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.04 Total: -16.02 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.17 Total: -47.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.66 Total: 16.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.07 -7.93 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592514997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.791 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds