Wall clock time and date at job start Mon Mar 30 2020 01:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 120.00096 * 2 1 4 4 N 1.46904 * 109.47335 * 126.07928 * 3 2 1 5 5 C 1.46899 * 110.99568 * 300.83959 * 4 3 2 6 6 C 1.50708 * 109.47084 * 288.59149 * 5 4 3 7 7 H 1.08000 * 119.99859 * 3.78445 * 6 5 4 8 8 C 1.37872 * 120.00208 * 183.77978 * 6 5 4 9 9 N 1.31510 * 120.00163 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99771 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47349 * 89.99945 * 10 8 6 12 12 H 1.48505 * 109.47212 * 209.99939 * 10 8 6 13 13 H 1.48500 * 109.47511 * 330.00051 * 10 8 6 14 14 C 1.46894 * 110.99590 * 64.78623 * 4 3 2 15 15 C 1.50707 * 109.46981 * 69.95929 * 14 4 3 16 16 C 1.35315 * 126.12458 * 266.28362 * 15 14 4 17 17 C 1.39866 * 107.91871 * 180.02562 * 16 15 14 18 18 N 1.30839 * 108.20548 * 359.74415 * 17 16 15 19 19 N 1.34951 * 126.12683 * 86.31412 * 15 14 4 20 20 C 1.46496 * 126.03767 * 359.95390 * 19 15 14 21 21 C 1.52991 * 109.47318 * 92.63297 * 20 19 15 22 22 C 1.52995 * 109.47584 * 184.96275 * 21 20 19 23 23 C 1.53001 * 109.47190 * 64.95763 * 21 20 19 24 24 H 1.07997 * 119.99802 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.99797 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.99959 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46848 * 6.07964 * 3 2 1 28 28 H 1.09001 * 109.47044 * 246.07985 * 3 2 1 29 29 H 1.09000 * 109.47809 * 48.59660 * 5 4 3 30 30 H 1.09005 * 109.47083 * 168.59708 * 5 4 3 31 31 H 0.97002 * 120.00247 * 180.02562 * 9 8 6 32 32 H 1.08994 * 109.47632 * 309.95471 * 14 4 3 33 33 H 1.09000 * 109.46985 * 189.95427 * 14 4 3 34 34 H 1.07997 * 126.04019 * 0.02729 * 16 15 14 35 35 H 1.08000 * 125.89744 * 179.97438 * 17 16 15 36 36 H 1.09005 * 109.47054 * 332.62757 * 20 19 15 37 37 H 1.09001 * 109.46842 * 212.63313 * 20 19 15 38 38 H 1.09011 * 109.47162 * 304.95934 * 21 20 19 39 39 H 1.09008 * 109.46771 * 299.99524 * 22 21 20 40 40 H 1.08995 * 109.47624 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47286 * 59.99447 * 22 21 20 42 42 H 1.08999 * 109.46981 * 60.00406 * 23 21 20 43 43 H 1.09005 * 109.46817 * 180.02562 * 23 21 20 44 44 H 1.09004 * 109.47058 * 299.99844 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0148 1.3214 1.1194 5 6 2.3195 1.1600 2.4033 6 6 1.5506 2.4170 2.7196 7 1 1.5260 3.2286 2.0075 8 6 0.8785 2.5308 3.9180 9 7 0.2071 3.6275 4.1938 10 14 0.9215 1.1273 5.1499 11 1 2.0767 1.3074 6.0655 12 1 -0.3377 1.1208 5.9372 13 1 1.0597 -0.1623 4.4266 14 6 4.0480 0.2915 0.9471 15 6 4.9570 0.6773 -0.1913 16 6 4.8284 0.2896 -1.4814 17 6 5.8739 0.8659 -2.2101 18 7 6.6008 1.5786 -1.3882 19 7 6.0452 1.4708 -0.1068 20 6 6.5524 2.1113 1.1092 21 6 7.5992 1.2074 1.7632 22 6 8.0386 1.8171 3.0959 23 6 8.8106 1.0774 0.8377 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3602 2.1307 0.1088 28 1 2.6061 1.4114 -0.9394 29 1 1.6298 0.3184 2.3399 30 1 3.0496 0.9729 3.1908 31 1 -0.2655 3.7077 5.0371 32 1 3.5743 -0.6649 0.7259 33 1 4.6309 0.2047 1.8641 34 1 4.0552 -0.3516 -1.8781 35 1 6.0487 0.7465 -3.2692 36 1 5.7287 2.2753 1.8041 37 1 7.0076 3.0681 0.8531 38 1 7.1689 0.2214 1.9392 39 1 8.4689 2.8031 2.9200 40 1 8.7847 1.1733 3.5616 41 1 7.1756 1.9097 3.7552 42 1 9.2409 2.0633 0.6619 43 1 9.5562 0.4330 1.3036 44 1 8.4975 0.6429 -0.1117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592514997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:49 Heat of formation + Delta-G solvation = 77.788874 kcal Electronic energy + Delta-G solvation = -22316.853604 eV Core-core repulsion = 19270.734287 eV Total energy + Delta-G solvation = -3046.119317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18966 -39.00797 -37.35894 -34.79511 -34.05506 -32.75837 -31.82672 -29.49466 -28.06245 -27.68921 -27.07507 -25.29961 -22.59252 -21.96725 -21.75281 -20.82209 -19.87489 -18.83592 -17.62893 -16.87231 -16.65823 -16.13458 -16.00964 -15.83062 -15.47624 -15.01134 -14.77209 -14.63478 -14.31493 -14.18720 -13.69833 -13.58576 -13.30894 -13.13168 -13.01065 -12.86908 -12.59808 -12.37917 -12.22841 -12.17234 -12.15617 -11.89685 -11.83755 -11.73013 -11.51254 -11.41920 -10.75011 -10.23542 -10.10336 -9.37016 -9.00615 -8.24437 -6.26522 0.98136 1.35796 1.37591 1.45380 1.47914 1.69209 1.99775 2.36426 3.09555 3.34783 3.64967 3.72354 3.82032 4.02531 4.06267 4.10098 4.18333 4.32494 4.44486 4.47794 4.54263 4.65303 4.72479 4.77500 4.85163 4.88846 4.92125 4.95438 4.99815 5.01195 5.03354 5.14601 5.21316 5.31492 5.34987 5.37524 5.57086 5.72918 5.83335 5.88438 6.05064 6.18789 6.33168 6.63531 6.79108 6.90328 7.36154 8.92498 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.006039 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.202286 B = 4635.553645 C = 5928.551000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.186 4.186 3 C 0.093 3.907 4 N -0.530 5.530 5 C 0.174 3.826 6 C -0.504 4.504 7 H 0.032 0.968 8 C 0.010 3.990 9 N -0.950 5.950 10 Si 0.941 3.059 11 H -0.265 1.265 12 H -0.287 1.287 13 H -0.247 1.247 14 C 0.109 3.891 15 C 0.097 3.903 16 C -0.278 4.278 17 C 0.039 3.961 18 N -0.324 5.324 19 N -0.359 5.359 20 C 0.131 3.869 21 C -0.103 4.103 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.002 0.998 30 H 0.028 0.972 31 H 0.265 0.735 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.208 0.792 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.965 -10.726 -7.340 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.205 4.205 3 C -0.035 4.035 4 N -0.252 5.252 5 C 0.048 3.952 6 C -0.542 4.542 7 H 0.050 0.950 8 C -0.187 4.187 9 N -0.592 5.592 10 Si 0.764 3.236 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.171 1.171 14 C -0.020 4.020 15 C -0.032 4.032 16 C -0.308 4.308 17 C -0.146 4.146 18 N -0.146 5.146 19 N -0.141 5.141 20 C 0.010 3.990 21 C -0.123 4.123 22 C -0.200 4.200 23 C -0.193 4.193 24 H 0.131 0.869 25 H 0.099 0.901 26 H 0.139 0.861 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.020 0.980 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.175 0.825 35 H 0.224 0.776 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.197 -9.332 -6.952 18.357 hybrid contribution -1.641 -1.122 0.587 2.072 sum 12.556 -10.454 -6.365 17.534 Atomic orbital electron populations 1.23909 0.96192 1.01825 0.99902 1.23528 0.96787 0.99452 1.00763 1.21160 0.93787 0.94599 0.93923 1.62069 1.13846 1.46479 1.02844 1.19949 0.92756 0.95125 0.87388 1.21154 1.29352 1.01298 1.02425 0.94975 1.25765 0.94689 0.98164 1.00091 1.70053 1.34894 1.29116 1.25098 0.85812 0.77936 0.80592 0.79224 1.19018 1.21249 1.17079 1.20695 0.91927 0.94357 0.95007 1.21082 0.90065 0.94820 0.97199 1.21432 1.05193 1.12250 0.91969 1.24249 0.93677 0.95777 1.00871 1.77251 1.23863 1.24764 0.88684 1.48647 1.20786 1.37452 1.07188 1.21929 0.98288 0.96526 0.82259 1.21450 0.95594 0.98888 0.96352 1.21759 1.01833 1.01538 0.94863 1.21734 0.96848 1.02038 0.98706 0.86863 0.90090 0.86062 0.93103 0.89895 0.98040 0.95416 0.92631 0.90875 0.89983 0.82519 0.77554 0.89299 0.89264 0.91399 0.91734 0.90736 0.92585 0.92503 0.91573 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.64 14.32 67.77 0.97 -4.67 16 2 C -0.19 -5.85 7.44 25.64 0.19 -5.66 16 3 C 0.09 3.41 5.50 85.56 0.47 3.88 16 4 N -0.53 -20.45 4.62 -909.92 -4.21 -24.66 16 5 C 0.17 7.81 3.64 85.56 0.31 8.13 16 6 C -0.50 -28.17 9.21 25.60 0.24 -27.94 16 7 H 0.03 2.05 7.58 -2.91 -0.02 2.02 16 8 C 0.01 0.56 5.47 84.65 0.46 1.02 16 9 N -0.95 -58.76 13.96 21.44 0.30 -58.46 16 10 Si 0.94 42.64 27.39 68.60 1.88 44.52 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.25 -10.31 6.65 99.48 0.66 -9.65 16 14 C 0.11 3.34 4.77 85.56 0.41 3.75 16 15 C 0.10 2.88 5.84 41.41 0.24 3.12 16 16 C -0.28 -7.33 9.57 21.99 0.21 -7.12 16 17 C 0.04 0.99 12.03 85.23 1.02 2.02 16 18 N -0.32 -9.69 11.47 -57.02 -0.65 -10.34 16 19 N -0.36 -10.76 3.26 -334.70 -1.09 -11.85 16 20 C 0.13 3.56 5.54 86.38 0.48 4.03 16 21 C -0.10 -2.26 3.13 -10.80 -0.03 -2.30 16 22 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 23 C -0.14 -2.85 9.02 71.98 0.65 -2.20 16 24 H 0.11 2.91 8.06 -2.91 -0.02 2.89 16 25 H 0.08 2.82 7.84 -2.91 -0.02 2.80 16 26 H 0.12 3.25 6.71 -2.91 -0.02 3.23 16 27 H 0.05 2.22 6.84 -2.39 -0.02 2.21 16 28 H 0.08 2.81 6.41 -2.39 -0.02 2.79 16 29 H 0.00 0.09 6.02 -2.39 -0.01 0.07 16 30 H 0.03 1.21 6.99 -2.38 -0.02 1.19 16 31 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.07 1.99 6.23 -2.39 -0.01 1.98 16 33 H 0.08 2.42 7.48 -2.39 -0.02 2.41 16 34 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.21 3.64 8.06 -2.91 -0.02 3.61 16 36 H 0.09 2.69 7.62 -2.38 -0.02 2.67 16 37 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.04 1.09 6.83 -2.38 -0.02 1.07 16 Total: -1.00 -66.29 352.24 3.42 -62.87 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.90 Total: 23.81 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 6.28 Total: -25.90 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -5.65 Total: -105.31 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.52 kcal Total: -66.29 3.42 -62.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592514997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.662 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds