Wall clock time and date at job start Mon Mar 30 2020 01:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40088 * 126.03966 * 2 1 4 4 C 1.30835 * 108.20490 * 180.02562 * 3 2 1 5 5 C 1.39869 * 108.20562 * 359.77895 * 4 3 2 6 6 C 1.50702 * 126.04061 * 180.23359 * 5 4 3 7 7 C 1.52998 * 117.49882 * 8.77593 * 6 5 4 8 8 C 1.52996 * 60.00007 * 252.51060 * 7 6 5 9 9 C 1.34953 * 126.03828 * 180.02562 * 2 1 3 10 10 C 1.50697 * 126.12365 * 359.94509 * 9 2 1 11 11 N 1.46905 * 109.47066 * 90.02499 * 10 9 2 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46923 * 299.99733 * 13 12 11 15 15 C 1.52999 * 109.46998 * 59.99872 * 13 12 11 16 16 C 1.50703 * 109.46807 * 179.97438 * 13 12 11 17 17 H 1.07995 * 120.00107 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99714 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99944 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99765 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47110 * 90.00207 * 20 18 16 22 22 H 1.48501 * 109.47137 * 210.00199 * 20 18 16 23 23 H 1.48496 * 109.47323 * 330.00240 * 20 18 16 24 24 H 1.08995 * 109.46999 * 269.98065 * 1 2 3 25 25 H 1.09003 * 109.46817 * 29.97572 * 1 2 3 26 26 H 1.08997 * 109.46877 * 149.97122 * 1 2 3 27 27 H 1.08011 * 125.89843 * 180.02562 * 4 3 2 28 28 H 1.08998 * 115.54524 * 154.48799 * 6 5 4 29 29 H 1.09001 * 117.49875 * 0.02562 * 7 6 5 30 30 H 1.09005 * 117.49852 * 145.02301 * 7 6 5 31 31 H 1.09001 * 117.50367 * 252.51376 * 8 7 6 32 32 H 1.09002 * 117.49949 * 107.49067 * 8 7 6 33 33 H 1.09001 * 109.47558 * 330.02662 * 10 9 2 34 34 H 1.08998 * 109.47216 * 210.02325 * 10 9 2 35 35 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 36 36 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 37 37 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 38 38 H 1.09002 * 109.47301 * 60.00027 * 14 13 12 39 39 H 1.09001 * 109.47017 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.47249 * 300.00302 * 14 13 12 41 41 H 1.09001 * 109.46999 * 60.00126 * 15 13 12 42 42 H 1.09001 * 109.46478 * 179.97438 * 15 13 12 43 43 H 1.08993 * 109.47197 * 299.99817 * 15 13 12 44 44 H 0.97007 * 120.00038 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5437 -0.6666 0.0042 6 6 4.7680 -1.5453 0.0103 7 6 6.1234 -0.8669 0.2185 8 6 5.7424 -1.4074 -1.1612 9 6 2.2589 -1.0913 -0.0005 10 6 1.7973 -2.5258 0.0000 11 7 1.6468 -2.9923 -1.3848 12 6 1.1964 -4.3900 -1.4235 13 6 1.0521 -4.8392 -2.8790 14 6 0.0255 -3.9528 -3.5869 15 6 2.4035 -4.7191 -3.5861 16 6 0.5906 -6.2733 -2.9186 17 1 0.4179 -6.8106 -1.9979 18 6 0.3888 -6.8993 -4.1304 19 7 0.5996 -6.2450 -5.2516 20 14 -0.1825 -8.6771 -4.1795 21 1 -1.6668 -8.7198 -4.1920 22 1 0.3418 -9.3318 -5.4050 23 1 0.3233 -9.3929 -2.9808 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5143 27 1 4.4055 1.3710 -0.0003 28 1 4.6312 -2.5390 0.4369 29 1 6.1297 0.2149 0.3515 30 1 6.8789 -1.4143 0.7823 31 1 6.2470 -2.3103 -1.5051 32 1 5.4979 -0.6811 -1.9363 33 1 0.8390 -2.5990 0.5142 34 1 2.5334 -3.1442 0.5137 35 1 2.5055 -2.8743 -1.9014 36 1 1.9280 -5.0216 -0.9195 37 1 0.2338 -4.4756 -0.9193 38 1 0.3596 -2.9156 -3.5581 39 1 -0.0777 -4.2731 -4.6236 40 1 -0.9374 -4.0383 -3.0830 41 1 3.1349 -5.3506 -3.0817 42 1 2.3008 -5.0396 -4.6228 43 1 2.7377 -3.6820 -3.5574 44 1 0.4580 -6.6855 -6.1042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594945929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:46 Heat of formation + Delta-G solvation = 96.415714 kcal Electronic energy + Delta-G solvation = -22042.704901 eV Core-core repulsion = 18997.393304 eV Total energy + Delta-G solvation = -3045.311597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28446 -37.03539 -36.97700 -34.27545 -32.81936 -31.37747 -29.72039 -26.70327 -25.69924 -25.58040 -25.19457 -23.11340 -22.75948 -22.27051 -20.21791 -19.16130 -18.48285 -16.66917 -15.88580 -15.75212 -15.34890 -14.98391 -14.54592 -14.13226 -14.10042 -13.84439 -13.54206 -12.78210 -12.69755 -12.45230 -12.40036 -12.11850 -11.79118 -11.53637 -11.47954 -11.16157 -11.02369 -10.78724 -10.67037 -10.62029 -10.48017 -10.27337 -10.20434 -10.09112 -9.42114 -9.28164 -9.08093 -8.65515 -8.31548 -8.07788 -7.80762 -5.93302 -4.04026 1.93240 2.62414 2.75847 3.29735 3.37043 3.39450 4.04047 4.41493 4.51845 4.67755 4.89063 4.96404 5.04090 5.12676 5.22132 5.23835 5.32345 5.37478 5.40360 5.53335 5.65889 5.71130 5.84927 5.94076 6.14759 6.19705 6.26496 6.31292 6.35166 6.67836 6.71994 6.85816 7.04299 7.09362 7.13964 7.33468 7.41437 7.63536 7.73370 7.79376 7.79933 7.88625 8.18089 8.31403 8.52686 8.97310 9.61220 11.07160 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.004264 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.324600 B = 6565.582677 C = 7256.242637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.360 5.360 3 N -0.302 5.302 4 C 0.050 3.950 5 C -0.209 4.209 6 C -0.071 4.071 7 C -0.178 4.178 8 C -0.173 4.173 9 C 0.110 3.890 10 C 0.117 3.883 11 N -0.680 5.680 12 C 0.075 3.925 13 C 0.070 3.930 14 C -0.119 4.119 15 C -0.132 4.132 16 C -0.507 4.507 17 H 0.052 0.948 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.176 0.824 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.345 0.655 36 H 0.016 0.984 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.017 0.983 41 H 0.019 0.981 42 H 0.083 0.917 43 H 0.011 0.989 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 10.503 10.274 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.142 5.142 3 N -0.123 5.123 4 C -0.136 4.136 5 C -0.221 4.221 6 C -0.090 4.090 7 C -0.215 4.215 8 C -0.210 4.210 9 C -0.018 4.018 10 C -0.014 4.014 11 N -0.314 5.314 12 C -0.053 4.053 13 C 0.069 3.931 14 C -0.176 4.176 15 C -0.190 4.190 16 C -0.546 4.546 17 H 0.070 0.930 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.193 0.807 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.165 0.835 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.093 0.907 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.030 0.970 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.052 11.747 10.008 15.955 hybrid contribution 0.966 -2.116 0.227 2.337 sum 5.018 9.631 10.235 14.923 Atomic orbital electron populations 1.21886 0.74167 1.05193 1.02863 1.48290 1.06518 1.03124 1.56264 1.77303 1.01536 1.08350 1.25146 1.23554 0.95088 0.94301 1.00645 1.18981 0.92509 0.93092 1.17563 1.20140 0.87301 0.98354 1.03202 1.22933 0.97886 1.00492 1.00213 1.23010 1.03073 1.03283 0.91672 1.20766 0.90307 0.90502 1.00265 1.20479 1.00388 0.87367 0.93197 1.60666 1.37727 1.23554 1.09417 1.22197 0.97863 0.84311 1.00890 1.18084 0.92875 0.94179 0.87921 1.21640 0.97068 0.96043 1.02893 1.21829 0.97042 0.95801 1.04327 1.21087 1.44970 0.96352 0.92197 0.92993 1.24879 0.95335 0.97561 0.95745 1.69834 1.49152 1.36075 0.97194 0.86663 0.78876 0.85417 0.77396 1.20812 1.21325 1.20101 0.91228 0.89553 0.88366 0.80660 0.87679 0.88968 0.88923 0.88695 0.88755 0.90469 0.93161 0.83528 0.96550 0.92470 0.96234 0.90725 0.96367 0.96150 0.89840 0.97021 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 11.09 59.84 0.66 1.78 16 2 N -0.36 -5.16 4.01 -63.89 -0.26 -5.42 16 3 N -0.30 -4.56 12.58 30.63 0.39 -4.17 16 4 C 0.05 0.66 11.35 -17.37 -0.20 0.47 16 5 C -0.21 -2.86 5.76 -105.05 -0.61 -3.46 16 6 C -0.07 -0.84 5.95 -91.77 -0.55 -1.39 16 7 C -0.18 -1.74 10.02 -26.73 -0.27 -2.01 16 8 C -0.17 -1.92 10.23 -26.73 -0.27 -2.19 16 9 C 0.11 1.59 6.44 -82.26 -0.53 1.06 16 10 C 0.12 1.65 5.49 -4.97 -0.03 1.63 16 11 N -0.68 -11.57 5.70 -115.05 -0.66 -12.23 16 12 C 0.08 1.49 4.59 -3.82 -0.02 1.47 16 13 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 14 C -0.12 -2.82 8.09 37.16 0.30 -2.52 16 15 C -0.13 -3.06 7.92 37.16 0.29 -2.77 16 16 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16 17 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 20 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 1.12 7.66 -51.93 -0.40 0.72 16 27 H 0.18 1.83 7.20 -52.48 -0.38 1.45 16 28 H 0.11 1.25 7.41 -51.93 -0.38 0.86 16 29 H 0.09 0.82 6.98 -51.93 -0.36 0.46 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.03 7.72 -51.93 -0.40 0.63 16 34 H 0.05 0.68 7.32 -51.93 -0.38 0.30 16 35 H 0.34 6.11 6.76 -39.29 -0.27 5.84 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.43 7.60 -51.93 -0.39 0.03 16 39 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 43 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 44 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -28.50 349.87 -8.70 -37.20 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.28 Total: 5.52 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.66 Total: -18.30 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.01 Total: -45.44 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.50 -8.70 -37.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594945929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.617 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds