Wall clock time and date at job start Mon Mar 30 2020 01:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40088 * 126.03966 * 2 1 4 4 C 1.30835 * 108.20490 * 180.02562 * 3 2 1 5 5 C 1.39869 * 108.20562 * 359.77895 * 4 3 2 6 6 C 1.50702 * 126.04061 * 180.23359 * 5 4 3 7 7 C 1.52998 * 117.49882 * 8.77593 * 6 5 4 8 8 C 1.52996 * 60.00007 * 252.51060 * 7 6 5 9 9 C 1.34953 * 126.03828 * 180.02562 * 2 1 3 10 10 C 1.50697 * 126.12365 * 359.94509 * 9 2 1 11 11 N 1.46905 * 109.47066 * 90.02499 * 10 9 2 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46923 * 299.99733 * 13 12 11 15 15 C 1.52999 * 109.46998 * 59.99872 * 13 12 11 16 16 C 1.50703 * 109.46807 * 179.97438 * 13 12 11 17 17 H 1.07995 * 120.00107 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99714 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99944 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99765 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47110 * 90.00207 * 20 18 16 22 22 H 1.48501 * 109.47137 * 210.00199 * 20 18 16 23 23 H 1.48496 * 109.47323 * 330.00240 * 20 18 16 24 24 H 1.08995 * 109.46999 * 269.98065 * 1 2 3 25 25 H 1.09003 * 109.46817 * 29.97572 * 1 2 3 26 26 H 1.08997 * 109.46877 * 149.97122 * 1 2 3 27 27 H 1.08011 * 125.89843 * 180.02562 * 4 3 2 28 28 H 1.08998 * 115.54524 * 154.48799 * 6 5 4 29 29 H 1.09001 * 117.49875 * 0.02562 * 7 6 5 30 30 H 1.09005 * 117.49852 * 145.02301 * 7 6 5 31 31 H 1.09001 * 117.50367 * 252.51376 * 8 7 6 32 32 H 1.09002 * 117.49949 * 107.49067 * 8 7 6 33 33 H 1.09001 * 109.47558 * 330.02662 * 10 9 2 34 34 H 1.08998 * 109.47216 * 210.02325 * 10 9 2 35 35 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 36 36 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 37 37 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 38 38 H 1.09002 * 109.47301 * 60.00027 * 14 13 12 39 39 H 1.09001 * 109.47017 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.47249 * 300.00302 * 14 13 12 41 41 H 1.09001 * 109.46999 * 60.00126 * 15 13 12 42 42 H 1.09001 * 109.46478 * 179.97438 * 15 13 12 43 43 H 1.08993 * 109.47197 * 299.99817 * 15 13 12 44 44 H 0.97007 * 120.00038 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5437 -0.6666 0.0042 6 6 4.7680 -1.5453 0.0103 7 6 6.1234 -0.8669 0.2185 8 6 5.7424 -1.4074 -1.1612 9 6 2.2589 -1.0913 -0.0005 10 6 1.7973 -2.5258 0.0000 11 7 1.6468 -2.9923 -1.3848 12 6 1.1964 -4.3900 -1.4235 13 6 1.0521 -4.8392 -2.8790 14 6 0.0255 -3.9528 -3.5869 15 6 2.4035 -4.7191 -3.5861 16 6 0.5906 -6.2733 -2.9186 17 1 0.4179 -6.8106 -1.9979 18 6 0.3888 -6.8993 -4.1304 19 7 0.5996 -6.2450 -5.2516 20 14 -0.1825 -8.6771 -4.1795 21 1 -1.6668 -8.7198 -4.1920 22 1 0.3418 -9.3318 -5.4050 23 1 0.3233 -9.3929 -2.9808 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5143 27 1 4.4055 1.3710 -0.0003 28 1 4.6312 -2.5390 0.4369 29 1 6.1297 0.2149 0.3515 30 1 6.8789 -1.4143 0.7823 31 1 6.2470 -2.3103 -1.5051 32 1 5.4979 -0.6811 -1.9363 33 1 0.8390 -2.5990 0.5142 34 1 2.5334 -3.1442 0.5137 35 1 2.5055 -2.8743 -1.9014 36 1 1.9280 -5.0216 -0.9195 37 1 0.2338 -4.4756 -0.9193 38 1 0.3596 -2.9156 -3.5581 39 1 -0.0777 -4.2731 -4.6236 40 1 -0.9374 -4.0383 -3.0830 41 1 3.1349 -5.3506 -3.0817 42 1 2.3008 -5.0396 -4.6228 43 1 2.7377 -3.6820 -3.5574 44 1 0.4580 -6.6855 -6.1042 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594945929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:46 Heat of formation + Delta-G solvation = 81.046792 kcal Electronic energy + Delta-G solvation = -22043.371347 eV Core-core repulsion = 18997.393304 eV Total energy + Delta-G solvation = -3045.978043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.30917 -38.64941 -37.87084 -35.82586 -33.89282 -33.06232 -31.04176 -27.65649 -27.48948 -27.25310 -26.96069 -24.55279 -23.75062 -23.09509 -21.20799 -20.37300 -20.11236 -18.01968 -17.56486 -16.79344 -16.64005 -16.36457 -15.94977 -15.38904 -15.26917 -15.00644 -14.78484 -14.24213 -14.13118 -13.87983 -13.57295 -13.41894 -13.08500 -13.00556 -12.77879 -12.66137 -12.47656 -12.40203 -12.26076 -12.10144 -12.05284 -11.70854 -11.44785 -11.29074 -11.13790 -10.97909 -10.58504 -10.32963 -10.24103 -9.25166 -9.03020 -7.94635 -6.11431 0.86783 1.43824 1.46511 1.54124 1.66345 1.75793 2.48296 3.18037 3.28047 3.44435 3.62438 3.77230 4.03015 4.12516 4.25387 4.28744 4.41262 4.42382 4.44622 4.54547 4.61508 4.67238 4.72681 4.88623 4.89643 4.90362 5.05145 5.11185 5.18531 5.25210 5.30789 5.37315 5.39590 5.43542 5.55199 5.72352 5.74320 5.78436 6.05296 6.17440 6.22958 6.34684 6.47577 6.58699 6.77757 6.98436 7.56457 9.03436 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.004264 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.324600 B = 6565.582677 C = 7256.242637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.368 5.368 3 N -0.327 5.327 4 C 0.046 3.954 5 C -0.211 4.211 6 C -0.087 4.087 7 C -0.159 4.159 8 C -0.178 4.178 9 C 0.093 3.907 10 C 0.124 3.876 11 N -0.680 5.680 12 C 0.091 3.909 13 C 0.061 3.939 14 C -0.104 4.104 15 C -0.120 4.120 16 C -0.523 4.523 17 H 0.048 0.952 18 C 0.022 3.978 19 N -0.904 5.904 20 Si 0.943 3.057 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.271 1.271 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.201 0.799 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.341 0.659 36 H 0.016 0.984 37 H 0.056 0.944 38 H 0.029 0.971 39 H 0.045 0.955 40 H 0.013 0.987 41 H 0.019 0.981 42 H 0.053 0.947 43 H 0.029 0.971 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.332 10.843 11.566 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.150 5.150 3 N -0.149 5.149 4 C -0.139 4.139 5 C -0.223 4.223 6 C -0.106 4.106 7 C -0.195 4.195 8 C -0.216 4.216 9 C -0.035 4.035 10 C -0.007 4.007 11 N -0.313 5.313 12 C -0.037 4.037 13 C 0.060 3.940 14 C -0.162 4.162 15 C -0.178 4.178 16 C -0.562 4.562 17 H 0.066 0.934 18 C -0.177 4.177 19 N -0.543 5.543 20 Si 0.770 3.230 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.196 1.196 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.218 0.782 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.160 0.840 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.705 12.092 11.314 17.215 hybrid contribution 0.778 -2.173 -0.166 2.314 sum 5.483 9.920 11.148 15.898 Atomic orbital electron populations 1.22058 0.72933 1.05283 1.04243 1.48548 1.07399 1.02894 1.56179 1.77257 1.02387 1.09131 1.26083 1.23998 0.95401 0.94661 0.99809 1.19256 0.92892 0.93494 1.16654 1.20175 0.87663 0.98441 1.04368 1.23034 0.96470 1.01207 0.98824 1.23013 1.03064 1.03485 0.92009 1.20836 0.90866 0.90471 1.01357 1.20437 1.01260 0.87502 0.91469 1.60564 1.37627 1.21691 1.11428 1.21847 0.97997 0.85776 0.98121 1.18132 0.92562 0.92994 0.90295 1.21457 0.97112 0.96608 1.01020 1.21652 0.97072 0.96751 1.02313 1.21427 1.44874 0.97866 0.92014 0.93393 1.25524 0.95683 1.00822 0.95632 1.69976 1.49792 1.37178 0.97404 0.85797 0.78330 0.81582 0.77292 1.20648 1.21362 1.19615 0.89222 0.88934 0.88780 0.78219 0.87862 0.87869 0.87451 0.88429 0.89461 0.89503 0.92240 0.83960 0.96614 0.92524 0.95177 0.93577 0.96780 0.96202 0.92790 0.95226 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.00 11.09 127.77 1.42 3.42 16 2 N -0.37 -10.06 4.01 -356.05 -1.43 -11.49 16 3 N -0.33 -9.43 12.58 -57.02 -0.72 -10.15 16 4 C 0.05 1.15 11.35 85.24 0.97 2.12 16 5 C -0.21 -5.41 5.76 -20.14 -0.12 -5.53 16 6 C -0.09 -1.91 5.95 -11.54 -0.07 -1.98 16 7 C -0.16 -2.68 10.02 30.59 0.31 -2.37 16 8 C -0.18 -3.64 10.23 30.59 0.31 -3.33 16 9 C 0.09 2.55 6.44 41.40 0.27 2.82 16 10 C 0.12 3.31 5.49 85.55 0.47 3.78 16 11 N -0.68 -22.22 5.70 -517.92 -2.95 -25.17 16 12 C 0.09 3.49 4.59 86.30 0.40 3.89 16 13 C 0.06 2.82 0.57 -52.93 -0.03 2.79 16 14 C -0.10 -4.95 8.09 71.98 0.58 -4.36 16 15 C -0.12 -5.53 7.92 71.98 0.57 -4.96 16 16 C -0.52 -27.32 8.01 25.60 0.21 -27.12 16 17 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 18 C 0.02 1.19 5.15 84.66 0.44 1.62 16 19 N -0.90 -49.93 9.35 21.45 0.20 -49.73 16 20 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.09 2.03 7.66 -2.39 -0.02 2.02 16 27 H 0.20 3.70 7.20 -2.90 -0.02 3.68 16 28 H 0.10 2.28 7.41 -2.39 -0.02 2.27 16 29 H 0.10 1.52 6.98 -2.39 -0.02 1.50 16 30 H 0.11 1.51 8.14 -2.38 -0.02 1.50 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 2.15 7.72 -2.39 -0.02 2.13 16 34 H 0.06 1.50 7.32 -2.39 -0.02 1.49 16 35 H 0.34 11.63 6.76 -89.69 -0.61 11.02 16 36 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.03 1.32 7.60 -2.39 -0.02 1.30 16 39 H 0.05 2.45 6.07 -2.39 -0.01 2.43 16 40 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 2.81 6.07 -2.39 -0.01 2.80 16 43 H 0.03 1.21 6.57 -2.39 -0.02 1.20 16 44 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 Total: -1.00 -59.74 349.87 3.22 -56.52 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.37 Total: 24.65 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 5.72 Total: -29.21 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -4.90 Total: -96.53 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -59.74 3.22 -56.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594945929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.566 kcal (2) G-P(sol) polarization free energy of solvation -59.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds