Wall clock time and date at job start Mon Mar 30 2020 01:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47300 * 240.00169 * 2 1 3 5 5 H 1.08000 * 120.00290 * 240.00047 * 4 2 1 6 6 C 1.37875 * 120.00355 * 59.99679 * 4 2 1 7 7 N 1.31520 * 119.99521 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00556 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47148 * 59.99955 * 8 6 4 10 10 H 1.48498 * 109.47295 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46848 * 299.99842 * 8 6 4 12 12 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 13 13 N 1.46906 * 109.47053 * 300.00316 * 12 2 1 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50704 * 109.47030 * 179.97438 * 14 13 12 16 16 C 1.35318 * 126.12373 * 95.02200 * 15 14 13 17 17 C 1.39878 * 107.91722 * 179.97438 * 16 15 14 18 18 N 1.30837 * 108.20297 * 0.02562 * 17 16 15 19 19 N 1.34945 * 126.12644 * 274.71644 * 15 14 13 20 20 C 1.46493 * 126.03979 * 0.03371 * 19 15 14 21 21 C 1.53005 * 109.47274 * 89.99926 * 20 19 15 22 22 C 1.53003 * 117.49940 * 243.62391 * 21 20 19 23 23 C 1.52998 * 117.49751 * 175.00102 * 21 20 19 24 24 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 25 25 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 26 26 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 29 29 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 30 30 H 0.96999 * 120.00022 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47056 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47006 * 60.00102 * 12 2 1 33 33 H 1.00899 * 110.99484 * 303.95475 * 13 12 2 34 34 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 35 35 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 36 36 H 1.07996 * 126.04231 * 359.95073 * 16 15 14 37 37 H 1.07995 * 125.89588 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.47686 * 210.00123 * 20 19 15 39 39 H 1.09002 * 109.47130 * 330.00376 * 20 19 15 40 40 H 1.08995 * 115.54765 * 29.33494 * 21 20 19 41 41 H 1.09007 * 117.49547 * 359.97438 * 22 21 20 42 42 H 1.08999 * 117.49990 * 145.01822 * 22 21 20 43 43 H 1.09001 * 117.49859 * 214.98085 * 23 21 20 44 44 H 1.08995 * 117.50314 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1203 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8270 -0.4198 -5.2204 11 1 3.8065 -1.1207 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.5004 0.0420 4.8772 16 6 0.3796 -0.2583 5.5733 17 6 0.2588 0.6675 6.6148 18 7 1.2705 1.4943 6.5461 19 7 2.0715 1.1165 5.4606 20 6 3.3085 1.7741 5.0322 21 6 2.9776 2.8751 4.0226 22 6 3.5215 2.7171 2.6013 23 6 4.1283 3.7610 3.5410 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7095 1.1618 -3.4843 31 1 3.1300 -0.7216 1.2489 32 1 1.6768 -1.7490 1.2492 33 1 1.8198 0.9436 2.4401 34 1 1.6572 -1.7226 3.6869 35 1 3.1109 -0.6954 3.6873 36 1 -0.3016 -1.0693 5.3619 37 1 -0.5328 0.6951 7.3490 38 1 3.8057 2.2122 5.8976 39 1 3.9675 1.0409 4.5672 40 1 1.9987 3.3403 4.1385 41 1 4.1155 1.8288 2.3856 42 1 2.9003 3.0782 1.7817 43 1 3.9063 4.8090 3.3396 44 1 5.1211 3.5592 3.9430 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594946864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:49 Heat of formation + Delta-G solvation = 97.984903 kcal Electronic energy + Delta-G solvation = -22466.209969 eV Core-core repulsion = 19420.966418 eV Total energy + Delta-G solvation = -3045.243552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.15018 -37.69125 -36.89369 -34.22824 -32.64306 -31.35508 -29.68505 -26.94238 -25.71809 -25.62930 -25.18685 -23.07136 -22.32026 -21.48458 -20.71796 -19.54032 -18.48140 -16.94266 -15.95259 -15.53093 -15.31847 -15.00216 -14.69208 -14.42543 -14.12858 -13.51501 -13.38731 -13.20000 -12.70735 -12.46728 -12.31207 -11.96698 -11.90017 -11.76332 -11.53045 -11.12819 -11.00365 -10.70081 -10.65258 -10.50367 -10.46318 -10.18498 -10.09906 -10.07785 -9.41158 -9.26784 -9.08777 -8.65537 -8.38417 -8.29997 -7.79523 -5.93198 -4.03934 1.96134 2.53903 2.98666 3.30994 3.36274 3.38594 3.68754 4.40726 4.46203 4.59710 4.69257 4.87347 4.89485 5.01953 5.11018 5.20841 5.32222 5.35954 5.38208 5.58870 5.72139 5.82092 5.90601 5.94392 6.07649 6.13093 6.26198 6.27895 6.37914 6.66681 6.79107 6.84113 7.04113 7.12031 7.12414 7.35941 7.43160 7.64465 7.72757 7.80172 7.83457 7.90673 8.17864 8.31777 8.52739 8.97079 9.61203 11.07190 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.004726 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.978302 B = 5922.918028 C = 6619.878577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.071 3.929 3 C -0.133 4.133 4 C -0.508 4.508 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.074 3.926 13 N -0.680 5.680 14 C 0.118 3.882 15 C 0.100 3.900 16 C -0.260 4.260 17 C 0.042 3.958 18 N -0.303 5.303 19 N -0.366 5.366 20 C 0.164 3.836 21 C -0.179 4.179 22 C -0.176 4.176 23 C -0.169 4.169 24 H 0.019 0.981 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.083 0.917 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.013 0.987 32 H 0.059 0.941 33 H 0.343 0.657 34 H 0.094 0.906 35 H 0.031 0.969 36 H 0.146 0.854 37 H 0.180 0.820 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 1.862 14.084 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.070 3.930 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.054 4.054 13 N -0.315 5.315 14 C -0.013 4.013 15 C -0.027 4.027 16 C -0.290 4.290 17 C -0.143 4.143 18 N -0.124 5.124 19 N -0.149 5.149 20 C 0.042 3.958 21 C -0.198 4.198 22 C -0.213 4.213 23 C -0.206 4.206 24 H 0.038 0.962 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.112 0.888 35 H 0.049 0.951 36 H 0.164 0.836 37 H 0.197 0.803 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.901 2.733 14.414 15.180 hybrid contribution 0.824 -0.943 -1.254 1.772 sum 4.725 1.790 13.160 14.097 Atomic orbital electron populations 1.21654 0.97374 0.98699 1.00098 1.18075 0.93226 0.91958 0.89746 1.21951 0.97663 0.99208 1.00271 1.21048 1.31256 1.11911 0.90430 0.93048 1.24873 0.94984 0.94951 0.98654 1.69823 1.36653 1.22735 1.23048 0.86727 0.79060 0.79882 0.82675 1.20384 1.21373 1.20500 1.22216 0.95466 0.98088 0.89603 1.60662 1.63600 1.06899 1.00291 1.20530 0.96293 0.97955 0.86531 1.21122 0.95106 0.90368 0.96150 1.21217 1.00929 1.06467 1.00406 1.23785 0.97431 0.93841 0.99272 1.77298 1.05651 1.23376 1.06050 1.48527 1.20368 1.23112 1.22880 1.21211 0.82485 0.94196 0.97913 1.22683 0.99913 1.00832 0.96368 1.23407 1.03524 1.01210 0.93164 1.22939 0.96854 0.97013 1.03813 0.96151 0.90722 0.96187 0.96061 0.89865 0.96901 0.93117 0.96831 0.92226 0.83592 0.88810 0.95142 0.83622 0.80319 0.88579 0.89212 0.87027 0.88576 0.87036 0.88366 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 2 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 3 C -0.13 -2.99 7.07 37.16 0.26 -2.73 16 4 C -0.51 -13.28 8.01 -34.44 -0.28 -13.55 16 5 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -24.02 9.35 55.43 0.52 -23.50 16 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.07 1.48 4.59 -3.82 -0.02 1.47 16 13 N -0.68 -11.93 5.70 -115.06 -0.66 -12.58 16 14 C 0.12 1.73 5.86 -4.98 -0.03 1.70 16 15 C 0.10 1.47 6.44 -82.26 -0.53 0.94 16 16 C -0.26 -3.64 10.72 -40.01 -0.43 -4.07 16 17 C 0.04 0.56 12.03 -17.36 -0.21 0.35 16 18 N -0.30 -4.53 12.58 30.63 0.39 -4.14 16 19 N -0.37 -5.20 3.61 -57.14 -0.21 -5.41 16 20 C 0.16 1.92 6.53 -4.04 -0.03 1.89 16 21 C -0.18 -2.16 5.69 -90.62 -0.52 -2.67 16 22 C -0.18 -2.24 7.86 -26.73 -0.21 -2.45 16 23 C -0.17 -1.73 10.25 -26.73 -0.27 -2.01 16 24 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 25 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 29 H 0.01 0.25 4.81 -51.93 -0.25 0.00 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.34 5.96 4.55 -39.29 -0.18 5.78 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.03 0.42 7.23 -51.93 -0.38 0.04 16 36 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.96 6.88 -51.93 -0.36 0.60 16 40 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.10 1.25 8.03 -51.93 -0.42 0.83 16 42 H 0.11 1.61 6.05 -51.93 -0.31 1.30 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -28.30 343.68 -9.04 -37.35 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.11 Total: 7.91 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -2.13 Total: -20.51 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.04 Total: -45.64 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.30 -9.04 -37.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594946864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.331 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds