Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47300 * 240.00169 * 2 1 3 5 5 H 1.08000 * 120.00290 * 240.00047 * 4 2 1 6 6 C 1.37875 * 120.00355 * 59.99679 * 4 2 1 7 7 N 1.31520 * 119.99521 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00556 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47148 * 59.99955 * 8 6 4 10 10 H 1.48498 * 109.47295 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46848 * 299.99842 * 8 6 4 12 12 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 13 13 N 1.46906 * 109.47053 * 300.00316 * 12 2 1 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50704 * 109.47030 * 179.97438 * 14 13 12 16 16 C 1.35318 * 126.12373 * 95.02200 * 15 14 13 17 17 C 1.39878 * 107.91722 * 179.97438 * 16 15 14 18 18 N 1.30837 * 108.20297 * 0.02562 * 17 16 15 19 19 N 1.34945 * 126.12644 * 274.71644 * 15 14 13 20 20 C 1.46493 * 126.03979 * 0.03371 * 19 15 14 21 21 C 1.53005 * 109.47274 * 89.99926 * 20 19 15 22 22 C 1.53003 * 117.49940 * 243.62391 * 21 20 19 23 23 C 1.52998 * 117.49751 * 175.00102 * 21 20 19 24 24 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 25 25 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 26 26 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 29 29 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 30 30 H 0.96999 * 120.00022 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47056 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47006 * 60.00102 * 12 2 1 33 33 H 1.00899 * 110.99484 * 303.95475 * 13 12 2 34 34 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 35 35 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 36 36 H 1.07996 * 126.04231 * 359.95073 * 16 15 14 37 37 H 1.07995 * 125.89588 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.47686 * 210.00123 * 20 19 15 39 39 H 1.09002 * 109.47130 * 330.00376 * 20 19 15 40 40 H 1.08995 * 115.54765 * 29.33494 * 21 20 19 41 41 H 1.09007 * 117.49547 * 359.97438 * 22 21 20 42 42 H 1.08999 * 117.49990 * 145.01822 * 22 21 20 43 43 H 1.09001 * 117.49859 * 214.98085 * 23 21 20 44 44 H 1.08995 * 117.50314 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1203 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8270 -0.4198 -5.2204 11 1 3.8065 -1.1207 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.5004 0.0420 4.8772 16 6 0.3796 -0.2583 5.5733 17 6 0.2588 0.6675 6.6148 18 7 1.2705 1.4943 6.5461 19 7 2.0715 1.1165 5.4606 20 6 3.3085 1.7741 5.0322 21 6 2.9776 2.8751 4.0226 22 6 3.5215 2.7171 2.6013 23 6 4.1283 3.7610 3.5410 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7095 1.1618 -3.4843 31 1 3.1300 -0.7216 1.2489 32 1 1.6768 -1.7490 1.2492 33 1 1.8198 0.9436 2.4401 34 1 1.6572 -1.7226 3.6869 35 1 3.1109 -0.6954 3.6873 36 1 -0.3016 -1.0693 5.3619 37 1 -0.5328 0.6951 7.3490 38 1 3.8057 2.2122 5.8976 39 1 3.9675 1.0409 4.5672 40 1 1.9987 3.3403 4.1385 41 1 4.1155 1.8288 2.3856 42 1 2.9003 3.0782 1.7817 43 1 3.9063 4.8090 3.3396 44 1 5.1211 3.5592 3.9430 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594946864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = 82.917851 kcal Electronic energy + Delta-G solvation = -22466.863326 eV Core-core repulsion = 19420.966418 eV Total energy + Delta-G solvation = -3045.896908 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.19291 -38.86104 -38.31471 -35.79564 -33.74362 -33.03597 -31.03403 -27.95462 -27.52416 -27.25545 -26.95055 -24.56598 -23.28468 -22.45457 -21.74609 -20.59697 -20.28109 -18.15205 -17.73080 -16.86815 -16.53276 -16.34829 -16.04077 -15.55883 -15.46056 -14.85102 -14.62235 -14.47477 -14.12949 -13.95826 -13.65923 -13.35057 -13.29759 -12.95870 -12.85669 -12.73387 -12.56235 -12.50285 -12.27825 -12.07917 -12.06121 -11.57338 -11.43247 -11.28558 -11.03790 -10.97096 -10.57920 -10.30918 -10.24681 -9.46275 -9.19216 -7.94207 -6.11038 0.88156 1.45274 1.46621 1.52726 1.56726 1.94767 2.48506 2.77235 3.28290 3.40540 3.57365 3.69809 3.78556 3.92397 4.01818 4.07363 4.21606 4.42036 4.46196 4.55650 4.63139 4.66045 4.74976 4.84053 4.87065 4.88231 4.98299 5.04713 5.11560 5.16153 5.24306 5.30412 5.32571 5.43441 5.55285 5.72299 5.78249 5.80326 6.05382 6.16233 6.24141 6.35291 6.49002 6.60447 6.79962 6.98273 7.56660 9.03659 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.004726 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.978302 B = 5922.918028 C = 6619.878577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.061 3.939 3 C -0.116 4.116 4 C -0.524 4.524 5 H 0.048 0.952 6 C 0.023 3.977 7 N -0.904 5.904 8 Si 0.943 3.057 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.274 1.274 12 C 0.089 3.911 13 N -0.687 5.687 14 C 0.121 3.879 15 C 0.086 3.914 16 C -0.270 4.270 17 C 0.042 3.958 18 N -0.326 5.326 19 N -0.370 5.370 20 C 0.160 3.840 21 C -0.179 4.179 22 C -0.191 4.191 23 C -0.144 4.144 24 H 0.027 0.973 25 H 0.047 0.953 26 H 0.013 0.987 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.029 0.971 30 H 0.256 0.744 31 H 0.017 0.983 32 H 0.056 0.944 33 H 0.344 0.656 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.157 0.843 37 H 0.211 0.789 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.841 1.543 15.328 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.060 3.940 3 C -0.174 4.174 4 C -0.562 4.562 5 H 0.066 0.934 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.040 4.040 13 N -0.321 5.321 14 C -0.009 4.009 15 C -0.042 4.042 16 C -0.300 4.300 17 C -0.143 4.143 18 N -0.148 5.148 19 N -0.153 5.153 20 C 0.039 3.961 21 C -0.198 4.198 22 C -0.228 4.228 23 C -0.182 4.182 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.164 0.836 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.175 0.825 37 H 0.227 0.773 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.864 2.414 15.669 16.583 hybrid contribution 0.491 -0.824 -1.596 1.862 sum 5.355 1.590 14.073 15.141 Atomic orbital electron populations 1.21496 0.98141 0.97857 0.99051 1.18131 0.92590 0.92560 0.90703 1.21728 0.97585 0.98564 0.99524 1.21386 1.31162 1.11969 0.91723 0.93389 1.25514 0.95319 0.95612 1.01116 1.69969 1.37406 1.23669 1.23243 0.85861 0.78674 0.78819 0.79688 1.20174 1.21427 1.19989 1.21878 0.95408 0.97464 0.89221 1.60565 1.63986 1.06947 1.00589 1.20530 0.97170 0.98026 0.85167 1.21181 0.95724 0.90923 0.96380 1.21522 1.00927 1.06965 1.00548 1.24322 0.97575 0.92895 0.99488 1.77261 1.06472 1.24262 1.06783 1.48716 1.20834 1.23036 1.22678 1.21405 0.81975 0.94300 0.98404 1.22549 0.99730 1.01580 0.95955 1.23267 1.04273 1.02335 0.92954 1.23063 0.97222 0.96717 1.01166 0.95373 0.93385 0.96813 0.95817 0.92962 0.95197 0.93433 0.96530 0.92590 0.83568 0.87978 0.93731 0.82500 0.77288 0.87080 0.88073 0.89190 0.88808 0.89274 0.87665 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.23 8.09 71.98 0.58 -4.65 16 2 C 0.06 2.84 0.57 -52.93 -0.03 2.81 16 3 C -0.12 -5.25 7.07 71.98 0.51 -4.74 16 4 C -0.52 -27.37 8.01 25.60 0.21 -27.17 16 5 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 6 C 0.02 1.25 5.15 84.65 0.44 1.68 16 7 N -0.90 -49.82 9.35 21.45 0.20 -49.62 16 8 Si 0.94 42.51 29.54 68.60 2.03 44.54 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 12 C 0.09 3.47 4.59 86.30 0.40 3.86 16 13 N -0.69 -23.25 5.70 -517.93 -2.95 -26.21 16 14 C 0.12 3.34 5.86 85.56 0.50 3.84 16 15 C 0.09 2.37 6.44 41.41 0.27 2.64 16 16 C -0.27 -7.06 10.72 21.99 0.24 -6.82 16 17 C 0.04 1.04 12.03 85.24 1.03 2.06 16 18 N -0.33 -9.24 12.58 -57.02 -0.72 -9.96 16 19 N -0.37 -9.91 3.61 -334.70 -1.21 -11.12 16 20 C 0.16 3.44 6.53 86.38 0.56 4.01 16 21 C -0.18 -4.09 5.69 -10.79 -0.06 -4.16 16 22 C -0.19 -4.68 7.86 30.60 0.24 -4.44 16 23 C -0.14 -2.66 10.25 30.59 0.31 -2.35 16 24 H 0.03 1.27 7.60 -2.39 -0.02 1.25 16 25 H 0.05 2.58 6.07 -2.39 -0.01 2.57 16 26 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 2.69 6.07 -2.39 -0.01 2.68 16 29 H 0.03 1.21 4.81 -2.39 -0.01 1.20 16 30 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 31 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.34 11.61 4.55 -89.69 -0.41 11.20 16 34 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.04 1.11 7.23 -2.39 -0.02 1.10 16 36 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.21 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.10 1.93 6.88 -2.39 -0.02 1.91 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.09 2.33 8.03 -2.38 -0.02 2.31 16 42 H 0.09 2.58 6.05 -2.39 -0.01 2.57 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -59.92 343.68 3.10 -56.82 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.57 Total: 28.96 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 5.18 Total: -33.42 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -4.68 Total: -96.91 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -59.92 3.10 -56.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594946864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.738 kcal (2) G-P(sol) polarization free energy of solvation -59.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds