Wall clock time and date at job start Mon Mar 30 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 C 1.53000 * 109.46890 * 240.00208 * 2 1 3 5 5 C 1.50702 * 109.47374 * 59.99897 * 4 2 1 6 6 H 1.08004 * 119.99921 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00411 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00295 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99922 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47501 * 89.99635 * 9 7 5 11 11 H 1.48496 * 109.47196 * 210.00192 * 9 7 5 12 12 H 1.48502 * 109.46796 * 329.99783 * 9 7 5 13 13 C 1.52993 * 109.47400 * 120.00428 * 2 1 3 14 14 N 1.46910 * 109.47154 * 299.99854 * 13 2 1 15 15 C 1.46893 * 110.99930 * 179.97438 * 14 13 2 16 16 C 1.50702 * 109.46925 * 179.97438 * 15 14 13 17 17 C 1.34564 * 126.58406 * 95.02496 * 16 15 14 18 18 N 1.34005 * 108.03308 * 179.77327 * 17 16 15 19 19 C 1.30912 * 109.30162 * 0.09870 * 18 17 16 20 20 N 1.34814 * 108.60788 * 359.80826 * 19 18 17 21 21 C 1.47010 * 111.17740 * 180.29258 * 20 19 18 22 22 C 1.54389 * 105.52637 * 342.86364 * 21 20 19 23 23 C 1.51562 * 141.44570 * 179.77947 * 19 18 17 24 24 H 1.09009 * 109.47121 * 299.99858 * 1 2 3 25 25 H 1.08996 * 109.47138 * 59.99532 * 1 2 3 26 26 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46786 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47005 * 300.00041 * 3 2 1 29 29 H 1.08995 * 109.47084 * 60.00137 * 3 2 1 30 30 H 1.09003 * 109.47482 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47340 * 300.00079 * 4 2 1 32 32 H 0.96996 * 120.00111 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47548 * 179.97438 * 13 2 1 34 34 H 1.08997 * 109.47700 * 59.99774 * 13 2 1 35 35 H 1.00897 * 110.99756 * 56.04580 * 14 13 2 36 36 H 1.09003 * 109.47120 * 60.00466 * 15 14 13 37 37 H 1.09000 * 109.47526 * 299.99975 * 15 14 13 38 38 H 1.08001 * 125.98226 * 359.79776 * 17 16 15 39 39 H 1.08997 * 110.23147 * 223.85015 * 21 20 19 40 40 H 1.08998 * 110.23536 * 101.87987 * 21 20 19 41 41 H 1.09000 * 110.96733 * 267.60540 * 22 21 20 42 42 H 1.09006 * 110.99713 * 143.86294 * 22 21 20 43 43 H 1.09002 * 110.47688 * 315.24669 * 23 19 18 44 44 H 1.09002 * 110.47368 * 77.72549 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4815 -3.7321 8 7 1.4322 0.1382 -4.8058 9 14 2.9449 -2.0003 -3.9036 10 1 2.0864 -3.2111 -3.9495 11 1 3.7373 -1.9074 -5.1560 12 1 3.8650 -2.0897 -2.7413 13 6 2.0400 -0.7213 1.2491 14 7 1.5504 -0.0288 2.4487 15 6 2.0210 -0.6954 3.6702 16 6 1.5005 0.0419 4.8771 17 6 0.3878 -0.2485 5.5760 18 7 0.2814 0.6394 6.5741 19 6 1.2883 1.4743 6.5198 20 7 2.0731 1.1344 5.4776 21 6 3.2298 2.0351 5.3680 22 6 2.8694 3.2755 6.2137 23 6 1.8640 2.6845 7.2276 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2491 31 1 1.6766 -1.7489 -1.2493 32 1 1.6665 -0.1932 -5.6868 33 1 3.1300 -0.7217 1.2489 34 1 1.6768 -1.7489 1.2492 35 1 0.5439 0.0412 2.4402 36 1 3.1109 -0.6955 3.6872 37 1 1.6572 -1.7227 3.6868 38 1 -0.2989 -1.0559 5.3691 39 1 3.3879 2.3208 4.3281 40 1 4.1222 1.5530 5.7671 41 1 2.3984 4.0429 5.5995 42 1 3.7490 3.6708 6.7218 43 1 1.0779 3.4060 7.4499 44 1 2.3743 2.3840 8.1427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594955722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:48 Heat of formation + Delta-G solvation = 56.137913 kcal Electronic energy + Delta-G solvation = -21616.226279 eV Core-core repulsion = 18569.168105 eV Total energy + Delta-G solvation = -3047.058173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.53456 -37.86302 -36.58872 -34.66485 -32.36901 -31.69027 -29.29869 -27.97115 -27.46920 -26.40506 -25.65415 -23.94428 -22.39446 -21.81597 -20.59966 -19.81134 -17.95360 -16.97103 -16.79657 -16.11682 -15.18513 -14.94660 -14.66626 -14.27909 -14.07733 -13.96843 -13.69623 -13.58072 -13.23901 -12.83897 -12.60820 -12.47604 -12.21395 -12.11671 -11.91118 -11.86908 -11.43825 -11.09912 -10.98689 -10.88694 -10.52109 -10.37472 -9.94418 -9.84392 -9.70100 -9.62270 -9.33863 -8.93049 -8.51180 -8.41140 -8.15646 -6.01312 -3.97672 1.90419 2.62975 3.03112 3.30645 3.38517 3.41507 3.66606 4.12765 4.36935 4.40399 4.46784 4.48827 4.76026 5.02306 5.10694 5.17631 5.24714 5.31557 5.32641 5.43325 5.49775 5.52976 5.57591 5.62780 5.70234 5.84649 6.10213 6.20279 6.35427 6.39370 6.56031 6.65700 6.76015 6.76504 6.95200 7.04044 7.10895 7.13777 7.23127 7.30274 7.42939 7.55435 7.83702 8.04190 8.58331 9.04515 9.61647 11.11822 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032666 B = 0.003355 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.956120 B = 8342.621837 C = 8532.768894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C -0.116 4.116 4 C -0.004 4.004 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.683 5.683 15 C 0.130 3.870 16 C 0.009 3.991 17 C -0.020 4.020 18 N -0.482 5.482 19 C 0.178 3.822 20 N -0.463 5.463 21 C 0.101 3.899 22 C -0.129 4.129 23 C -0.039 4.039 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.014 0.986 31 H 0.008 0.992 32 H 0.261 0.739 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.345 0.655 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.171 0.829 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 3.292 23.067 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 C -0.174 4.174 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.316 5.316 15 C 0.000 4.000 16 C -0.105 4.105 17 C -0.169 4.169 18 N -0.201 5.201 19 C -0.085 4.085 20 N -0.147 5.147 21 C -0.020 4.020 22 C -0.167 4.167 23 C -0.078 4.078 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.164 0.836 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.189 0.811 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.194 3.743 23.270 23.939 hybrid contribution 0.664 -1.836 -0.991 2.190 sum 4.858 1.907 22.278 22.882 Atomic orbital electron populations 1.21786 0.95498 1.00560 1.00999 1.20415 0.95172 0.96099 0.93175 1.21601 0.99520 0.95598 1.00657 1.19626 0.95974 0.95270 0.93284 1.21133 1.31500 1.13227 0.88683 0.90436 1.25018 0.95802 0.96749 0.96021 1.69906 1.46117 1.40638 0.97837 0.86845 0.81293 0.84003 0.77494 1.20480 1.21545 1.19173 1.22158 0.99674 0.94872 0.89419 1.60604 1.17101 1.53462 1.00471 1.20248 0.99888 0.94088 0.85757 1.20876 0.97514 0.92411 0.99743 1.22065 0.97937 1.01844 0.95056 1.69840 1.21613 1.05254 1.23414 1.24230 0.91436 1.00189 0.92609 1.46199 1.21092 1.22956 1.24418 1.22370 0.87058 0.89399 1.03216 1.22734 1.00128 0.96633 0.97238 1.20613 0.98142 0.91612 0.97447 0.94574 0.91135 0.94033 0.94329 0.92081 0.93866 0.96763 0.97345 0.92872 0.91639 0.95592 0.83570 0.90784 0.92977 0.81142 0.88509 0.89601 0.89292 0.88200 0.88629 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 3 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 4 C 0.00 -0.09 3.11 -27.88 -0.09 -0.17 16 5 C -0.51 -13.93 8.20 -34.44 -0.28 -14.22 16 6 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.70 13.96 55.43 0.77 -26.93 16 9 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.07 1.07 4.65 -3.82 -0.02 1.05 16 14 N -0.68 -9.48 5.70 -115.06 -0.66 -10.14 16 15 C 0.13 1.57 6.24 -4.98 -0.03 1.54 16 16 C 0.01 0.12 6.76 -81.49 -0.55 -0.44 16 17 C -0.02 -0.27 11.78 -17.90 -0.21 -0.48 16 18 N -0.48 -7.05 11.26 -10.56 -0.12 -7.17 16 19 C 0.18 2.16 8.58 -154.86 -1.33 0.83 16 20 N -0.46 -5.38 3.61 -107.74 -0.39 -5.77 16 21 C 0.10 0.80 7.78 -3.04 -0.02 0.78 16 22 C -0.13 -0.70 7.17 -25.20 -0.18 -0.88 16 23 C -0.04 -0.28 6.86 -26.66 -0.18 -0.46 16 24 H 0.04 0.58 6.57 -51.92 -0.34 0.24 16 25 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 29 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 30 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 31 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.34 4.86 6.76 -39.29 -0.27 4.59 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.17 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -32.63 344.83 -9.79 -42.42 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.43 Total: 1.12 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.49 Total: -15.72 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.39 Total: -50.00 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.63 -9.79 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594955722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.558 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds