Wall clock time and date at job start Mon Mar 30 2020 01:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 C 1.53000 * 109.46890 * 240.00208 * 2 1 3 5 5 C 1.50702 * 109.47374 * 59.99897 * 4 2 1 6 6 H 1.08004 * 119.99921 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00411 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00295 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99922 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47501 * 89.99635 * 9 7 5 11 11 H 1.48496 * 109.47196 * 210.00192 * 9 7 5 12 12 H 1.48502 * 109.46796 * 329.99783 * 9 7 5 13 13 C 1.52993 * 109.47400 * 120.00428 * 2 1 3 14 14 N 1.46910 * 109.47154 * 299.99854 * 13 2 1 15 15 C 1.46893 * 110.99930 * 179.97438 * 14 13 2 16 16 C 1.50702 * 109.46925 * 179.97438 * 15 14 13 17 17 C 1.34564 * 126.58406 * 95.02496 * 16 15 14 18 18 N 1.34005 * 108.03308 * 179.77327 * 17 16 15 19 19 C 1.30912 * 109.30162 * 0.09870 * 18 17 16 20 20 N 1.34814 * 108.60788 * 359.80826 * 19 18 17 21 21 C 1.47010 * 111.17740 * 180.29258 * 20 19 18 22 22 C 1.54389 * 105.52637 * 342.86364 * 21 20 19 23 23 C 1.51562 * 141.44570 * 179.77947 * 19 18 17 24 24 H 1.09009 * 109.47121 * 299.99858 * 1 2 3 25 25 H 1.08996 * 109.47138 * 59.99532 * 1 2 3 26 26 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46786 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47005 * 300.00041 * 3 2 1 29 29 H 1.08995 * 109.47084 * 60.00137 * 3 2 1 30 30 H 1.09003 * 109.47482 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47340 * 300.00079 * 4 2 1 32 32 H 0.96996 * 120.00111 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47548 * 179.97438 * 13 2 1 34 34 H 1.08997 * 109.47700 * 59.99774 * 13 2 1 35 35 H 1.00897 * 110.99756 * 56.04580 * 14 13 2 36 36 H 1.09003 * 109.47120 * 60.00466 * 15 14 13 37 37 H 1.09000 * 109.47526 * 299.99975 * 15 14 13 38 38 H 1.08001 * 125.98226 * 359.79776 * 17 16 15 39 39 H 1.08997 * 110.23147 * 223.85015 * 21 20 19 40 40 H 1.08998 * 110.23536 * 101.87987 * 21 20 19 41 41 H 1.09000 * 110.96733 * 267.60540 * 22 21 20 42 42 H 1.09006 * 110.99713 * 143.86294 * 22 21 20 43 43 H 1.09002 * 110.47688 * 315.24669 * 23 19 18 44 44 H 1.09002 * 110.47368 * 77.72549 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4815 -3.7321 8 7 1.4322 0.1382 -4.8058 9 14 2.9449 -2.0003 -3.9036 10 1 2.0864 -3.2111 -3.9495 11 1 3.7373 -1.9074 -5.1560 12 1 3.8650 -2.0897 -2.7413 13 6 2.0400 -0.7213 1.2491 14 7 1.5504 -0.0288 2.4487 15 6 2.0210 -0.6954 3.6702 16 6 1.5005 0.0419 4.8771 17 6 0.3878 -0.2485 5.5760 18 7 0.2814 0.6394 6.5741 19 6 1.2883 1.4743 6.5198 20 7 2.0731 1.1344 5.4776 21 6 3.2298 2.0351 5.3680 22 6 2.8694 3.2755 6.2137 23 6 1.8640 2.6845 7.2276 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2491 31 1 1.6766 -1.7489 -1.2493 32 1 1.6665 -0.1932 -5.6868 33 1 3.1300 -0.7217 1.2489 34 1 1.6768 -1.7489 1.2492 35 1 0.5439 0.0412 2.4402 36 1 3.1109 -0.6955 3.6872 37 1 1.6572 -1.7227 3.6868 38 1 -0.2989 -1.0559 5.3691 39 1 3.3879 2.3208 4.3281 40 1 4.1222 1.5530 5.7671 41 1 2.3984 4.0429 5.5995 42 1 3.7490 3.6708 6.7218 43 1 1.0779 3.4060 7.4499 44 1 2.3743 2.3840 8.1427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594955722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:47 Heat of formation + Delta-G solvation = 35.904923 kcal Electronic energy + Delta-G solvation = -21617.103647 eV Core-core repulsion = 18569.168105 eV Total energy + Delta-G solvation = -3047.935542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.37098 -39.28178 -37.30325 -35.97695 -34.31477 -32.64812 -30.38407 -29.41442 -28.47826 -27.95616 -26.85078 -25.26201 -23.50215 -23.01740 -21.38606 -20.67863 -19.48720 -18.87684 -17.65254 -17.13551 -16.43848 -16.16048 -15.84041 -15.68334 -15.11677 -14.99740 -14.94872 -14.53332 -14.39510 -14.12664 -14.02460 -13.77355 -13.45056 -13.17448 -12.99181 -12.81259 -12.74654 -12.47413 -12.41652 -12.22572 -12.09206 -11.92458 -11.73295 -11.39450 -11.07399 -10.88613 -10.81559 -10.70410 -10.46558 -9.43398 -9.14172 -8.22028 -6.22669 1.02114 1.35979 1.37632 1.48632 1.89545 2.10361 2.39339 3.00677 3.13082 3.32617 3.55256 3.76395 3.94305 4.02296 4.07520 4.15711 4.27611 4.31574 4.44430 4.57551 4.61256 4.61458 4.69630 4.75796 4.78649 4.88672 4.91475 5.01498 5.01812 5.06218 5.15524 5.15923 5.35207 5.42527 5.47656 5.49451 5.59950 5.72790 5.80070 5.88292 6.03380 6.16838 6.38652 6.42832 6.84907 7.15098 7.39911 8.94341 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032666 B = 0.003355 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.956120 B = 8342.621837 C = 8532.768894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.048 4.048 3 C -0.106 4.106 4 C -0.002 4.002 5 C -0.504 4.504 6 H 0.042 0.958 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.247 1.247 13 C 0.081 3.919 14 N -0.684 5.684 15 C 0.138 3.862 16 C -0.002 4.002 17 C -0.038 4.038 18 N -0.526 5.526 19 C 0.169 3.831 20 N -0.469 5.469 21 C 0.091 3.909 22 C -0.116 4.116 23 C -0.039 4.039 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.070 0.930 34 H 0.034 0.966 35 H 0.343 0.657 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.180 0.820 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.134 0.866 43 H 0.103 0.897 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 2.727 25.377 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.049 4.049 3 C -0.164 4.164 4 C -0.040 4.040 5 C -0.543 4.543 6 H 0.061 0.939 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.171 1.171 13 C -0.048 4.048 14 N -0.317 5.317 15 C 0.009 3.991 16 C -0.117 4.117 17 C -0.187 4.187 18 N -0.246 5.246 19 C -0.094 4.094 20 N -0.151 5.151 21 C -0.029 4.029 22 C -0.153 4.153 23 C -0.078 4.078 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.163 0.837 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.197 0.803 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.152 0.848 43 H 0.121 0.879 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.001 3.186 25.605 26.491 hybrid contribution 0.050 -1.557 -1.659 2.276 sum 6.051 1.629 23.945 24.752 Atomic orbital electron populations 1.21693 0.95251 1.00745 1.00481 1.20348 0.95387 0.95891 0.93226 1.21482 0.99505 0.95587 0.99788 1.19587 0.95827 0.95310 0.93252 1.21434 1.30141 1.12117 0.90573 0.93949 1.25942 0.97609 1.00289 0.95725 1.70067 1.48318 1.42908 0.98477 0.85777 0.79688 0.79868 0.78001 1.19628 1.21532 1.17064 1.21886 0.99770 0.94717 0.88434 1.60532 1.17016 1.53627 1.00507 1.20209 1.00089 0.94361 0.84476 1.20938 0.97653 0.93132 1.00007 1.22355 0.98682 1.02306 0.95319 1.69800 1.23454 1.06680 1.24652 1.25145 0.90690 1.00654 0.92945 1.46524 1.21856 1.22776 1.23991 1.22705 0.86602 0.89981 1.03596 1.22786 1.00859 0.95315 0.96375 1.20872 0.98731 0.89963 0.98228 0.92092 0.94614 0.93467 0.94099 0.95464 0.92079 0.96654 0.96885 0.92897 0.91192 0.94830 0.83694 0.90203 0.91815 0.80324 0.89129 0.87835 0.89417 0.84757 0.87892 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 7.89 71.98 0.57 -3.94 16 2 C -0.05 -1.77 0.60 -52.18 -0.03 -1.80 16 3 C -0.11 -3.97 8.06 71.98 0.58 -3.39 16 4 C 0.00 -0.09 3.11 29.85 0.09 0.01 16 5 C -0.50 -28.26 8.20 25.60 0.21 -28.05 16 6 H 0.04 2.62 5.92 -2.91 -0.02 2.60 16 7 C 0.00 0.00 5.47 84.65 0.46 0.46 16 8 N -0.96 -60.19 13.96 21.45 0.30 -59.89 16 9 Si 0.94 44.36 27.47 68.60 1.88 46.24 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 13 C 0.08 2.35 4.65 86.30 0.40 2.75 16 14 N -0.68 -17.32 5.70 -517.94 -2.95 -20.27 16 15 C 0.14 3.00 6.24 85.56 0.53 3.53 16 16 C 0.00 -0.05 6.76 40.88 0.28 0.23 16 17 C -0.04 -0.99 11.78 83.52 0.98 -0.01 16 18 N -0.53 -15.12 11.26 -187.33 -2.11 -17.23 16 19 C 0.17 3.85 8.58 138.36 1.19 5.04 16 20 N -0.47 -10.01 3.61 -494.77 -1.79 -11.80 16 21 C 0.09 1.20 7.78 86.75 0.67 1.87 16 22 C -0.12 -0.86 7.17 31.59 0.23 -0.63 16 23 C -0.04 -0.46 6.86 30.64 0.21 -0.25 16 24 H 0.06 1.88 6.57 -2.38 -0.02 1.86 16 25 H 0.03 1.52 6.62 -2.39 -0.02 1.51 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.03 1.17 6.62 -2.39 -0.02 1.15 16 29 H 0.06 2.04 7.60 -2.39 -0.02 2.02 16 30 H 0.02 0.69 7.20 -2.39 -0.02 0.67 16 31 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 32 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.34 8.92 6.76 -89.70 -0.61 8.31 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.13 0.12 8.14 -2.38 -0.02 0.10 16 43 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -72.50 344.83 2.03 -70.47 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.31 Total: 16.67 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 6.38 Total: -24.20 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -6.55 Total: -109.20 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -72.50 2.03 -70.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594955722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.380 kcal (2) G-P(sol) polarization free energy of solvation -72.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds