Wall clock time and date at job start Mon Mar 30 2020 01:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 N 1.46499 * 109.46976 * 120.00113 * 2 1 3 5 5 N 1.40087 * 126.03618 * 300.15022 * 4 2 1 6 6 C 1.30833 * 108.20598 * 180.23726 * 5 4 2 7 7 C 1.39873 * 108.20422 * 359.77949 * 6 5 4 8 8 C 1.34942 * 126.04277 * 120.00060 * 4 2 1 9 9 C 1.50703 * 126.12345 * 0.03298 * 8 4 2 10 10 N 1.46898 * 109.47016 * 274.71740 * 9 8 4 11 11 C 1.46852 * 110.99758 * 294.20710 * 10 9 8 12 12 C 1.53044 * 109.52198 * 174.16640 * 11 10 9 13 13 C 1.53112 * 109.28010 * 59.17582 * 12 11 10 14 14 C 1.53116 * 109.16591 * 302.34710 * 13 12 11 15 15 H 1.09004 * 109.53383 * 297.69623 * 14 13 12 16 16 C 1.50694 * 109.50594 * 177.59490 * 14 13 12 17 17 H 1.08000 * 120.00563 * 240.19687 * 16 14 13 18 18 C 1.37885 * 119.99902 * 60.19850 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.46849 * 111.00167 * 170.00047 * 10 9 8 25 25 H 1.08996 * 109.47215 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46925 * 300.00303 * 1 2 3 27 27 H 1.08999 * 109.46752 * 59.99950 * 1 2 3 28 28 H 1.08997 * 109.46925 * 239.99697 * 2 1 3 29 29 H 1.09002 * 109.46740 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47396 * 299.99655 * 3 2 1 31 31 H 1.08997 * 109.47516 * 60.00059 * 3 2 1 32 32 H 1.08004 * 125.90005 * 179.81934 * 6 5 4 33 33 H 1.07993 * 126.04407 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47310 * 154.71231 * 9 8 4 35 35 H 1.09004 * 109.47247 * 34.70968 * 9 8 4 36 36 H 1.08998 * 109.46190 * 294.17319 * 11 10 9 37 37 H 1.08994 * 109.46462 * 54.14796 * 11 10 9 38 38 H 1.08999 * 109.50002 * 179.12318 * 12 11 10 39 39 H 1.09002 * 109.50074 * 299.23514 * 12 11 10 40 40 H 1.09003 * 109.52299 * 182.44001 * 13 12 11 41 41 H 1.09001 * 109.52333 * 62.25375 * 13 12 11 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.46434 * 65.81575 * 24 10 9 44 44 H 1.08994 * 109.46147 * 305.85189 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7566 -0.3257 2.5231 6 6 2.3656 -1.1763 3.3087 7 6 3.0297 -2.1119 2.5086 8 6 2.7974 -1.7923 1.2145 9 6 3.3204 -2.5307 0.0094 10 7 2.3108 -3.4932 -0.4514 11 6 2.0966 -4.5493 0.5462 12 6 0.9407 -5.4475 0.1000 13 6 1.2762 -6.0649 -1.2604 14 6 1.5421 -4.9442 -2.2692 15 1 0.6414 -4.3426 -2.3915 16 6 1.9310 -5.5435 -3.5961 17 1 2.8939 -5.3171 -4.0295 18 6 1.0572 -6.3808 -4.2569 19 7 -0.1152 -6.6569 -3.7289 20 14 1.5389 -7.1231 -5.9020 21 1 0.4339 -7.9808 -6.4006 22 1 1.8008 -6.0352 -6.8783 23 1 2.7651 -7.9438 -5.7348 24 6 2.6807 -4.0607 -1.7544 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 2.3567 -1.1594 4.3886 33 1 3.6226 -2.9427 2.8614 34 1 4.2336 -3.0622 0.2770 35 1 3.5345 -1.8191 -0.7881 36 1 3.0035 -5.1462 0.6436 37 1 1.8547 -4.0969 1.5079 38 1 0.7921 -6.2405 0.8329 39 1 0.0303 -4.8540 0.0156 40 1 0.4373 -6.6712 -1.6022 41 1 2.1645 -6.6899 -1.1676 42 1 -0.7300 -7.2457 -4.1940 43 1 3.5848 -4.6597 -1.6461 44 1 2.8629 -3.2533 -2.4635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:08 Heat of formation + Delta-G solvation = 64.907028 kcal Electronic energy + Delta-G solvation = -22446.452678 eV Core-core repulsion = 19399.774762 eV Total energy + Delta-G solvation = -3046.677916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15929 -38.13500 -35.53733 -34.05565 -32.12263 -30.41587 -29.90209 -29.27947 -27.28034 -25.84455 -24.94252 -22.85569 -22.06674 -21.37352 -20.49663 -18.98480 -18.60662 -16.70701 -16.33051 -15.41638 -14.85717 -14.69134 -14.40068 -14.25211 -14.09002 -13.68342 -13.29383 -13.19634 -12.84748 -12.57588 -12.33053 -12.23754 -12.18414 -11.97725 -11.68931 -11.38643 -11.33966 -11.07899 -10.95047 -10.71143 -10.69692 -10.36796 -10.11995 -9.85424 -9.49893 -9.22502 -8.99092 -8.73888 -8.36565 -8.29610 -7.75740 -5.99310 -4.05953 2.04806 2.65622 2.99551 3.30521 3.35741 3.37706 4.37062 4.52527 4.56527 4.78570 4.93216 5.01384 5.18089 5.23677 5.30828 5.47914 5.57253 5.63083 5.68386 5.75891 5.77914 5.83656 5.87266 5.88873 6.08109 6.11577 6.22942 6.26123 6.30239 6.38100 6.47838 6.71630 6.73285 6.85156 6.91768 7.17771 7.23599 7.35387 7.60210 7.69499 7.75346 7.92889 8.04896 8.15231 8.44962 8.97825 9.58508 11.06566 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.004499 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.036474 B = 6221.764043 C = 6696.604494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 C -0.159 4.159 4 N -0.349 5.349 5 N -0.300 5.300 6 C 0.040 3.960 7 C -0.279 4.279 8 C 0.109 3.891 9 C 0.110 3.890 10 N -0.533 5.533 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.057 3.943 15 H 0.033 0.967 16 C -0.517 4.517 17 H 0.053 0.947 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.287 1.287 22 H -0.277 1.277 23 H -0.278 1.278 24 C 0.068 3.932 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.177 0.823 33 H 0.140 0.860 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.024 0.976 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.030 0.970 42 H 0.260 0.740 43 H 0.022 0.978 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 10.841 9.603 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 C -0.217 4.217 4 N -0.132 5.132 5 N -0.122 5.122 6 C -0.146 4.146 7 C -0.310 4.310 8 C -0.020 4.020 9 C -0.020 4.020 10 N -0.258 5.258 11 C -0.067 4.067 12 C -0.154 4.154 13 C -0.149 4.149 14 C 0.038 3.962 15 H 0.052 0.948 16 C -0.555 4.555 17 H 0.071 0.929 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.204 1.204 24 C -0.059 4.059 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.194 0.806 33 H 0.158 0.842 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.274 12.106 9.308 15.618 hybrid contribution 1.542 -1.706 -0.671 2.396 sum 4.816 10.400 8.636 14.351 Atomic orbital electron populations 1.22069 0.93191 1.03606 1.02612 1.21300 0.95902 0.93140 0.84156 1.22137 1.01440 0.95021 1.03139 1.48718 1.38081 1.21266 1.05158 1.77222 1.23802 1.24386 0.86784 1.23692 0.97137 0.93985 0.99756 1.21177 1.12602 1.05826 0.91363 1.21006 0.94802 0.89522 0.96656 1.20650 0.93689 0.95014 0.92632 1.62036 1.43002 1.16595 1.04160 1.22095 0.97984 0.92026 0.94559 1.21658 0.97424 0.97322 0.98964 1.21656 1.01597 0.99643 0.91973 1.18641 0.92981 0.91731 0.92811 0.94845 1.21093 1.01948 1.28397 1.04093 0.92900 1.24927 0.94909 0.96365 0.97534 1.69884 1.07684 1.36644 1.38413 0.86694 0.77998 0.79189 0.84303 1.21315 1.20312 1.20374 1.22352 0.99017 0.97382 0.87125 0.91297 0.91748 0.90971 0.87628 0.92404 0.90805 0.91391 0.80623 0.84206 0.92717 0.90145 0.95776 0.91705 0.93527 0.92333 0.89157 0.95124 0.92977 0.95993 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.45 37.16 0.35 -1.59 16 2 C 0.16 1.96 3.65 -67.93 -0.25 1.71 16 3 C -0.16 -1.64 9.45 37.16 0.35 -1.29 16 4 N -0.35 -5.06 3.28 -50.69 -0.17 -5.23 16 5 N -0.30 -4.49 12.43 30.63 0.38 -4.11 16 6 C 0.04 0.52 12.03 -17.37 -0.21 0.31 16 7 C -0.28 -3.82 9.54 -40.01 -0.38 -4.20 16 8 C 0.11 1.60 5.67 -82.27 -0.47 1.13 16 9 C 0.11 1.61 4.93 -4.98 -0.02 1.58 16 10 N -0.53 -9.40 4.65 -236.11 -1.10 -10.50 16 11 C 0.06 1.07 5.29 -3.83 -0.02 1.05 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C -0.11 -2.58 5.03 -26.61 -0.13 -2.71 16 14 C 0.06 1.39 2.26 -91.70 -0.21 1.18 16 15 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 16 C -0.52 -13.80 8.56 -34.44 -0.29 -14.10 16 17 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 18 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 19 N -0.89 -25.00 11.36 55.43 0.63 -24.37 16 20 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 C 0.07 1.37 4.68 -3.83 -0.02 1.35 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.11 1.34 6.78 -51.93 -0.35 0.99 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 35 H 0.08 1.09 7.16 -51.93 -0.37 0.72 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 1.09 6.22 -51.93 -0.32 0.76 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.09 2.37 6.16 -51.93 -0.32 2.05 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.15 8.01 -51.93 -0.42 0.73 16 LS Contribution 346.84 15.07 5.23 5.23 Total: -1.00 -28.83 346.84 -9.27 -38.10 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.67 Total: 1.35 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.56 Total: -16.36 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.25 Total: -44.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.83 -9.27 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.011 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds