Wall clock time and date at job start Mon Mar 30 2020 01:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 N 1.46499 * 109.46976 * 120.00113 * 2 1 3 5 5 N 1.40087 * 126.03618 * 300.15022 * 4 2 1 6 6 C 1.30833 * 108.20598 * 180.23726 * 5 4 2 7 7 C 1.39873 * 108.20422 * 359.77949 * 6 5 4 8 8 C 1.34942 * 126.04277 * 120.00060 * 4 2 1 9 9 C 1.50703 * 126.12345 * 0.03298 * 8 4 2 10 10 N 1.46898 * 109.47016 * 274.71740 * 9 8 4 11 11 C 1.46852 * 110.99758 * 294.20710 * 10 9 8 12 12 C 1.53044 * 109.52198 * 174.16640 * 11 10 9 13 13 C 1.53112 * 109.28010 * 59.17582 * 12 11 10 14 14 C 1.53116 * 109.16591 * 302.34710 * 13 12 11 15 15 H 1.09004 * 109.53383 * 297.69623 * 14 13 12 16 16 C 1.50694 * 109.50594 * 177.59490 * 14 13 12 17 17 H 1.08000 * 120.00563 * 240.19687 * 16 14 13 18 18 C 1.37885 * 119.99902 * 60.19850 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.46849 * 111.00167 * 170.00047 * 10 9 8 25 25 H 1.08996 * 109.47215 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46925 * 300.00303 * 1 2 3 27 27 H 1.08999 * 109.46752 * 59.99950 * 1 2 3 28 28 H 1.08997 * 109.46925 * 239.99697 * 2 1 3 29 29 H 1.09002 * 109.46740 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47396 * 299.99655 * 3 2 1 31 31 H 1.08997 * 109.47516 * 60.00059 * 3 2 1 32 32 H 1.08004 * 125.90005 * 179.81934 * 6 5 4 33 33 H 1.07993 * 126.04407 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47310 * 154.71231 * 9 8 4 35 35 H 1.09004 * 109.47247 * 34.70968 * 9 8 4 36 36 H 1.08998 * 109.46190 * 294.17319 * 11 10 9 37 37 H 1.08994 * 109.46462 * 54.14796 * 11 10 9 38 38 H 1.08999 * 109.50002 * 179.12318 * 12 11 10 39 39 H 1.09002 * 109.50074 * 299.23514 * 12 11 10 40 40 H 1.09003 * 109.52299 * 182.44001 * 13 12 11 41 41 H 1.09001 * 109.52333 * 62.25375 * 13 12 11 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.46434 * 65.81575 * 24 10 9 44 44 H 1.08994 * 109.46147 * 305.85189 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7566 -0.3257 2.5231 6 6 2.3656 -1.1763 3.3087 7 6 3.0297 -2.1119 2.5086 8 6 2.7974 -1.7923 1.2145 9 6 3.3204 -2.5307 0.0094 10 7 2.3108 -3.4932 -0.4514 11 6 2.0966 -4.5493 0.5462 12 6 0.9407 -5.4475 0.1000 13 6 1.2762 -6.0649 -1.2604 14 6 1.5421 -4.9442 -2.2692 15 1 0.6414 -4.3426 -2.3915 16 6 1.9310 -5.5435 -3.5961 17 1 2.8939 -5.3171 -4.0295 18 6 1.0572 -6.3808 -4.2569 19 7 -0.1152 -6.6569 -3.7289 20 14 1.5389 -7.1231 -5.9020 21 1 0.4339 -7.9808 -6.4006 22 1 1.8008 -6.0352 -6.8783 23 1 2.7651 -7.9438 -5.7348 24 6 2.6807 -4.0607 -1.7544 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 2.3567 -1.1594 4.3886 33 1 3.6226 -2.9427 2.8614 34 1 4.2336 -3.0622 0.2770 35 1 3.5345 -1.8191 -0.7881 36 1 3.0035 -5.1462 0.6436 37 1 1.8547 -4.0969 1.5079 38 1 0.7921 -6.2405 0.8329 39 1 0.0303 -4.8540 0.0156 40 1 0.4373 -6.6712 -1.6022 41 1 2.1645 -6.6899 -1.1676 42 1 -0.7300 -7.2457 -4.1940 43 1 3.5848 -4.6597 -1.6461 44 1 2.8629 -3.2533 -2.4635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:08 Heat of formation + Delta-G solvation = 48.674166 kcal Electronic energy + Delta-G solvation = -22447.156588 eV Core-core repulsion = 19399.774762 eV Total energy + Delta-G solvation = -3047.381826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.21335 -39.68741 -36.50026 -35.78103 -33.84407 -31.85762 -31.37874 -30.45117 -28.18938 -27.14584 -26.88857 -23.90779 -23.61113 -23.03382 -21.53861 -20.34429 -20.04050 -18.43801 -17.66499 -16.86308 -16.48959 -15.93262 -15.61113 -15.48457 -15.37479 -14.92978 -14.89257 -14.44671 -14.27783 -13.95735 -13.76648 -13.61464 -13.23232 -13.11182 -13.05942 -12.81881 -12.69736 -12.54728 -12.39463 -12.31366 -12.09481 -11.85208 -11.71236 -11.43503 -11.35119 -10.90740 -10.66437 -10.36462 -10.17240 -9.41617 -9.14864 -8.06195 -6.20318 0.96698 1.43735 1.44383 1.51938 1.66234 1.97126 2.44580 3.14931 3.21380 3.57410 3.67066 4.00108 4.06935 4.12078 4.19523 4.22854 4.30574 4.39991 4.56762 4.62751 4.67283 4.71380 4.72829 4.75874 4.81060 4.88244 4.90621 4.96593 4.98682 5.10471 5.17746 5.19876 5.23089 5.30023 5.38786 5.52761 5.65115 5.87546 5.94979 6.10368 6.18130 6.23313 6.26246 6.46034 6.88858 6.92762 7.47882 8.98274 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.004499 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.036474 B = 6221.764043 C = 6696.604494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.149 3.851 3 C -0.149 4.149 4 N -0.356 5.356 5 N -0.324 5.324 6 C 0.038 3.962 7 C -0.281 4.281 8 C 0.093 3.907 9 C 0.115 3.885 10 N -0.541 5.541 11 C 0.070 3.930 12 C -0.109 4.109 13 C -0.103 4.103 14 C 0.055 3.945 15 H -0.005 1.005 16 C -0.534 4.534 17 H 0.055 0.945 18 C 0.015 3.985 19 N -0.917 5.917 20 Si 0.952 3.048 21 H -0.287 1.287 22 H -0.270 1.270 23 H -0.271 1.271 24 C 0.083 3.917 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.157 0.843 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.055 0.945 41 H 0.025 0.975 42 H 0.259 0.741 43 H 0.023 0.977 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 11.550 10.185 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 C -0.207 4.207 4 N -0.139 5.139 5 N -0.146 5.146 6 C -0.146 4.146 7 C -0.311 4.311 8 C -0.037 4.037 9 C -0.014 4.014 10 N -0.267 5.267 11 C -0.058 4.058 12 C -0.147 4.147 13 C -0.141 4.141 14 C 0.036 3.964 15 H 0.013 0.987 16 C -0.573 4.573 17 H 0.073 0.927 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.213 1.213 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.044 4.044 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.224 0.776 33 H 0.174 0.826 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.041 0.959 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.766 12.831 9.895 16.890 hybrid contribution 1.050 -1.908 -0.814 2.325 sum 5.816 10.923 9.081 15.350 Atomic orbital electron populations 1.22007 0.93393 1.01924 1.03449 1.21462 0.95770 0.94348 0.83616 1.22063 1.01359 0.93483 1.03813 1.48912 1.38134 1.21439 1.05444 1.77196 1.24712 1.25456 0.87213 1.24248 0.96073 0.93156 1.01164 1.21466 1.12403 1.06182 0.91026 1.21093 0.95596 0.89980 0.96985 1.20643 0.93177 0.94421 0.93157 1.61906 1.44634 1.16827 1.03291 1.22002 0.97189 0.91769 0.94849 1.21556 0.97757 0.97991 0.97349 1.21460 0.99836 0.98972 0.93854 1.18555 0.92916 0.92148 0.92759 0.98712 1.21493 1.02016 1.28449 1.05314 0.92706 1.25707 0.94883 0.96899 1.00917 1.70041 1.08628 1.37221 1.39724 0.85701 0.77717 0.78476 0.80283 1.21263 1.19557 1.19662 1.22005 0.96969 0.96818 0.88609 0.94102 0.92087 0.88944 0.87985 0.92359 0.88651 0.92126 0.77631 0.82564 0.91253 0.89179 0.94859 0.90281 0.91565 0.93979 0.92628 0.95588 0.93173 0.95889 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.45 71.98 0.68 -2.97 16 2 C 0.15 3.59 3.65 44.99 0.16 3.75 16 3 C -0.15 -2.83 9.45 71.98 0.68 -2.15 16 4 N -0.36 -9.86 3.28 -314.30 -1.03 -10.89 16 5 N -0.32 -9.20 12.43 -57.02 -0.71 -9.90 16 6 C 0.04 0.92 12.03 85.24 1.02 1.95 16 7 C -0.28 -6.93 9.54 21.99 0.21 -6.72 16 8 C 0.09 2.52 5.67 41.41 0.23 2.76 16 9 C 0.11 3.13 4.93 85.56 0.42 3.55 16 10 N -0.54 -18.49 4.65 -900.91 -4.19 -22.68 16 11 C 0.07 2.33 5.29 86.33 0.46 2.79 16 12 C -0.11 -4.25 6.09 30.65 0.19 -4.06 16 13 C -0.10 -4.90 5.03 30.67 0.15 -4.75 16 14 C 0.06 2.73 2.26 -11.49 -0.03 2.71 16 15 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 16 C -0.53 -28.89 8.56 25.60 0.22 -28.67 16 17 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 18 C 0.01 0.81 5.31 84.66 0.45 1.26 16 19 N -0.92 -53.05 11.36 21.45 0.24 -52.81 16 20 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 C 0.08 3.30 4.68 86.33 0.40 3.71 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.10 2.50 6.78 -2.39 -0.02 2.48 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.21 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 35 H 0.09 2.27 7.16 -2.38 -0.02 2.25 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 2.46 6.22 -2.39 -0.01 2.45 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 3.03 6.16 -2.39 -0.01 3.01 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 2.44 8.01 -2.39 -0.02 2.43 16 Total: -1.00 -62.76 346.84 2.55 -60.21 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.95 Total: 17.83 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 5.26 Total: -26.86 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -5.68 Total: -96.28 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -62.76 2.55 -60.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.883 kcal (2) G-P(sol) polarization free energy of solvation -62.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds