Wall clock time and date at job start Mon Mar 30 2020 02:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46864 * 2 1 4 4 C 1.34953 * 126.03725 * 125.00110 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.20624 * 4 3 2 6 6 C 1.50703 * 126.03521 * 179.76875 * 5 4 3 7 7 C 1.52999 * 109.47197 * 90.00061 * 6 5 4 8 8 N 1.46902 * 109.47199 * 179.97438 * 7 6 5 9 9 C 1.46836 * 111.00150 * 294.21055 * 8 7 6 10 10 C 1.53040 * 109.52527 * 174.16065 * 9 8 7 11 11 C 1.53116 * 109.27958 * 59.17738 * 10 9 8 12 12 C 1.53118 * 109.15880 * 302.35007 * 11 10 9 13 13 H 1.08997 * 109.50429 * 297.70955 * 12 11 10 14 14 C 1.50702 * 109.50364 * 177.59478 * 12 11 10 15 15 H 1.08003 * 120.00301 * 240.20139 * 14 12 11 16 16 C 1.37883 * 120.00240 * 60.19129 * 14 12 11 17 17 N 1.31515 * 119.99660 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00126 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47289 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46886 * 120.00072 * 18 16 14 21 21 H 1.48496 * 109.47393 * 240.00141 * 18 16 14 22 22 C 1.46846 * 110.99961 * 169.99684 * 8 7 6 23 23 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 24 24 N 1.30837 * 108.19940 * 0.36269 * 23 5 4 25 25 H 1.09009 * 109.46584 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47278 * 299.99670 * 1 2 3 27 27 H 1.09003 * 109.46981 * 60.00430 * 1 2 3 28 28 H 1.08998 * 109.47551 * 240.00363 * 2 1 3 29 29 H 1.09002 * 109.47429 * 119.99857 * 2 1 3 30 30 H 1.08002 * 126.12372 * 359.93597 * 4 3 2 31 31 H 1.09002 * 109.47285 * 209.99879 * 6 5 4 32 32 H 1.08996 * 109.47189 * 329.99836 * 6 5 4 33 33 H 1.08996 * 109.47136 * 299.99739 * 7 6 5 34 34 H 1.08996 * 109.47235 * 59.99803 * 7 6 5 35 35 H 1.09006 * 109.46627 * 294.17331 * 9 8 7 36 36 H 1.09006 * 109.46894 * 54.14455 * 9 8 7 37 37 H 1.09002 * 109.50460 * 299.23723 * 10 9 8 38 38 H 1.09002 * 109.54066 * 179.14181 * 10 9 8 39 39 H 1.09000 * 109.52387 * 182.44455 * 11 10 9 40 40 H 1.08999 * 109.57236 * 62.28032 * 11 10 9 41 41 H 0.97003 * 119.99856 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.46608 * 305.86263 * 22 8 7 43 43 H 1.08997 * 109.46044 * 65.83916 * 22 8 7 44 44 H 1.08001 * 125.90034 * 180.14354 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0679 3.2149 0.5486 6 6 3.9461 4.2030 1.2723 7 6 5.3607 4.1488 0.6918 8 7 6.2165 5.1124 1.3968 9 6 5.7802 6.4906 1.1394 10 6 6.5985 7.4555 2.0005 11 6 8.0837 7.2990 1.6628 12 6 8.5009 5.8439 1.8934 13 1 8.3713 5.5905 2.9455 14 6 9.9469 5.6679 1.5071 15 1 10.2167 4.9709 0.7274 16 6 10.9257 6.3968 2.1490 17 7 10.5973 7.2453 3.0986 18 14 12.7179 6.1791 1.6697 19 1 12.8209 5.1730 0.5823 20 1 13.2649 7.4762 1.1968 21 1 13.4928 5.7154 2.8486 22 6 7.6275 4.9258 1.0354 23 6 2.3128 3.4723 -0.6001 24 7 1.6808 2.3747 -0.9281 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3180 1.4130 1.7366 31 1 3.5411 5.2074 1.1490 32 1 3.9785 3.9519 2.3324 33 1 5.7657 3.1444 0.8151 34 1 5.3282 4.3999 -0.3683 35 1 5.9295 6.7281 0.0860 36 1 4.7234 6.5894 1.3875 37 1 6.4389 7.2275 3.0544 38 1 6.2852 8.4797 1.7983 39 1 8.6740 7.9533 2.3044 40 1 8.2509 7.5648 0.6190 41 1 11.2859 7.7578 3.5505 42 1 7.9125 3.8880 1.2079 43 1 7.7682 5.1708 -0.0174 44 1 2.2578 4.4153 -1.1237 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:05 Heat of formation + Delta-G solvation = 63.461889 kcal Electronic energy + Delta-G solvation = -21250.559699 eV Core-core repulsion = 18203.819117 eV Total energy + Delta-G solvation = -3046.740582 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26545 -38.20915 -35.10899 -34.04059 -32.38808 -30.91449 -30.28261 -29.74690 -27.26103 -24.90931 -24.18817 -23.36503 -21.65140 -20.92981 -20.78533 -19.75655 -18.52222 -17.03940 -16.33485 -15.63473 -15.17322 -14.65771 -14.56439 -14.32433 -14.13406 -13.78621 -13.27402 -13.12274 -12.90207 -12.67755 -12.51430 -12.42694 -12.23525 -11.97422 -11.62847 -11.52619 -11.40596 -10.93451 -10.81366 -10.62020 -10.57028 -10.33062 -9.97844 -9.78166 -9.48375 -9.41490 -8.99881 -8.63939 -8.34377 -8.24333 -7.55844 -5.93533 -3.99277 1.83254 2.39540 2.77899 3.32182 3.40179 3.44033 4.23486 4.44082 4.60776 4.65793 4.74311 4.84611 4.96287 5.19887 5.26730 5.36517 5.37743 5.52930 5.59159 5.69676 5.76071 5.79817 5.89912 5.95611 6.00468 6.17340 6.31015 6.38476 6.44027 6.52168 6.59342 6.65903 6.80044 6.82991 6.95327 7.04677 7.29050 7.47492 7.64483 7.76164 7.80962 7.92759 8.14632 8.23095 8.53771 9.05222 9.64747 11.12486 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033994 B = 0.003004 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.470414 B = 9319.935465 C = 9829.370125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 N -0.377 5.377 4 C 0.053 3.947 5 C -0.226 4.226 6 C -0.037 4.037 7 C 0.063 3.937 8 N -0.540 5.540 9 C 0.061 3.939 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.054 3.946 13 H 0.034 0.966 14 C -0.513 4.513 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.069 3.931 23 C 0.051 3.949 24 N -0.300 5.300 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.172 0.828 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.021 0.979 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.258 0.742 42 H 0.057 0.943 43 H 0.017 0.983 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.133 -10.427 -3.973 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.160 5.160 4 C -0.092 4.092 5 C -0.238 4.238 6 C -0.076 4.076 7 C -0.066 4.066 8 N -0.265 5.265 9 C -0.067 4.067 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.035 3.965 13 H 0.052 0.948 14 C -0.552 4.552 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.058 4.058 23 C -0.136 4.136 24 N -0.122 5.122 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.189 0.811 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -18.952 -11.111 -4.177 22.362 hybrid contribution 1.704 0.406 -0.584 1.847 sum -17.247 -10.705 -4.762 20.850 Atomic orbital electron populations 1.22050 0.93944 1.02696 1.03553 1.21639 0.95939 0.77762 1.03645 1.48621 1.35925 1.10016 1.21472 1.22384 0.95647 0.94717 0.96448 1.20176 1.07373 0.95264 1.00958 1.19910 0.92370 0.96504 0.98853 1.22042 0.92639 0.96751 0.95160 1.61993 1.03775 1.03112 1.57572 1.22066 0.98303 0.88991 0.97335 1.21673 0.98121 0.96100 0.99637 1.21646 0.91956 1.01597 0.99685 1.18668 0.92120 0.90168 0.95496 0.94785 1.21205 0.91355 1.22963 1.19628 0.92865 1.24939 0.98718 0.95269 0.94983 1.69908 1.32708 1.25898 1.24233 0.86587 0.85492 0.77855 0.78346 1.19893 1.21130 1.21070 1.22281 0.85559 1.00450 0.97521 1.23808 0.96013 0.97384 0.96344 1.77258 1.24067 0.97053 1.13782 0.90840 0.92107 0.91161 0.89996 0.88732 0.81054 0.91281 0.90729 0.91555 0.95782 0.96091 0.92120 0.92137 0.93670 0.89221 0.95254 0.93166 0.92462 0.96484 0.80334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 10.10 37.16 0.38 -0.68 16 2 C 0.13 0.93 7.23 -4.04 -0.03 0.90 16 3 N -0.38 -4.10 3.68 -61.36 -0.23 -4.33 16 4 C 0.05 0.58 11.36 -17.22 -0.20 0.38 16 5 C -0.23 -2.74 5.35 -105.06 -0.56 -3.31 16 6 C -0.04 -0.48 5.63 -27.88 -0.16 -0.64 16 7 C 0.06 0.96 4.94 -3.82 -0.02 0.94 16 8 N -0.54 -10.03 4.66 -234.68 -1.09 -11.12 16 9 C 0.06 1.08 5.29 -3.84 -0.02 1.06 16 10 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 11 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 12 C 0.05 1.37 2.26 -91.69 -0.21 1.17 16 13 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.51 -14.20 8.56 -34.44 -0.29 -14.50 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.53 11.36 55.43 0.63 -24.90 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.07 1.49 4.68 -3.84 -0.02 1.47 16 23 C 0.05 0.62 11.96 -17.37 -0.21 0.41 16 24 N -0.30 -3.90 12.42 30.62 0.38 -3.52 16 25 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.07 0.87 6.43 -51.93 -0.33 0.53 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.02 7.99 -51.93 -0.41 0.60 16 34 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.93 6.21 -51.93 -0.32 0.60 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.06 1.23 8.02 -51.93 -0.42 0.81 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 349.50 15.07 5.27 5.27 Total: -1.00 -30.80 349.50 -9.47 -40.27 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.69 Total: -1.63 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.73 Total: -16.42 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.31 Total: -43.88 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.80 -9.47 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.737 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds