Wall clock time and date at job start Mon Mar 30 2020 02:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46864 * 2 1 4 4 C 1.34953 * 126.03725 * 125.00110 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.20624 * 4 3 2 6 6 C 1.50703 * 126.03521 * 179.76875 * 5 4 3 7 7 C 1.52999 * 109.47197 * 90.00061 * 6 5 4 8 8 N 1.46902 * 109.47199 * 179.97438 * 7 6 5 9 9 C 1.46836 * 111.00150 * 294.21055 * 8 7 6 10 10 C 1.53040 * 109.52527 * 174.16065 * 9 8 7 11 11 C 1.53116 * 109.27958 * 59.17738 * 10 9 8 12 12 C 1.53118 * 109.15880 * 302.35007 * 11 10 9 13 13 H 1.08997 * 109.50429 * 297.70955 * 12 11 10 14 14 C 1.50702 * 109.50364 * 177.59478 * 12 11 10 15 15 H 1.08003 * 120.00301 * 240.20139 * 14 12 11 16 16 C 1.37883 * 120.00240 * 60.19129 * 14 12 11 17 17 N 1.31515 * 119.99660 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00126 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47289 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46886 * 120.00072 * 18 16 14 21 21 H 1.48496 * 109.47393 * 240.00141 * 18 16 14 22 22 C 1.46846 * 110.99961 * 169.99684 * 8 7 6 23 23 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 24 24 N 1.30837 * 108.19940 * 0.36269 * 23 5 4 25 25 H 1.09009 * 109.46584 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47278 * 299.99670 * 1 2 3 27 27 H 1.09003 * 109.46981 * 60.00430 * 1 2 3 28 28 H 1.08998 * 109.47551 * 240.00363 * 2 1 3 29 29 H 1.09002 * 109.47429 * 119.99857 * 2 1 3 30 30 H 1.08002 * 126.12372 * 359.93597 * 4 3 2 31 31 H 1.09002 * 109.47285 * 209.99879 * 6 5 4 32 32 H 1.08996 * 109.47189 * 329.99836 * 6 5 4 33 33 H 1.08996 * 109.47136 * 299.99739 * 7 6 5 34 34 H 1.08996 * 109.47235 * 59.99803 * 7 6 5 35 35 H 1.09006 * 109.46627 * 294.17331 * 9 8 7 36 36 H 1.09006 * 109.46894 * 54.14455 * 9 8 7 37 37 H 1.09002 * 109.50460 * 299.23723 * 10 9 8 38 38 H 1.09002 * 109.54066 * 179.14181 * 10 9 8 39 39 H 1.09000 * 109.52387 * 182.44455 * 11 10 9 40 40 H 1.08999 * 109.57236 * 62.28032 * 11 10 9 41 41 H 0.97003 * 119.99856 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.46608 * 305.86263 * 22 8 7 43 43 H 1.08997 * 109.46044 * 65.83916 * 22 8 7 44 44 H 1.08001 * 125.90034 * 180.14354 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0679 3.2149 0.5486 6 6 3.9461 4.2030 1.2723 7 6 5.3607 4.1488 0.6918 8 7 6.2165 5.1124 1.3968 9 6 5.7802 6.4906 1.1394 10 6 6.5985 7.4555 2.0005 11 6 8.0837 7.2990 1.6628 12 6 8.5009 5.8439 1.8934 13 1 8.3713 5.5905 2.9455 14 6 9.9469 5.6679 1.5071 15 1 10.2167 4.9709 0.7274 16 6 10.9257 6.3968 2.1490 17 7 10.5973 7.2453 3.0986 18 14 12.7179 6.1791 1.6697 19 1 12.8209 5.1730 0.5823 20 1 13.2649 7.4762 1.1968 21 1 13.4928 5.7154 2.8486 22 6 7.6275 4.9258 1.0354 23 6 2.3128 3.4723 -0.6001 24 7 1.6808 2.3747 -0.9281 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3180 1.4130 1.7366 31 1 3.5411 5.2074 1.1490 32 1 3.9785 3.9519 2.3324 33 1 5.7657 3.1444 0.8151 34 1 5.3282 4.3999 -0.3683 35 1 5.9295 6.7281 0.0860 36 1 4.7234 6.5894 1.3875 37 1 6.4389 7.2275 3.0544 38 1 6.2852 8.4797 1.7983 39 1 8.6740 7.9533 2.3044 40 1 8.2509 7.5648 0.6190 41 1 11.2859 7.7578 3.5505 42 1 7.9125 3.8880 1.2079 43 1 7.7682 5.1708 -0.0174 44 1 2.2578 4.4153 -1.1237 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:04 Heat of formation + Delta-G solvation = 45.539534 kcal Electronic energy + Delta-G solvation = -21251.336871 eV Core-core repulsion = 18203.819117 eV Total energy + Delta-G solvation = -3047.517754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10040 -39.79487 -36.26293 -35.29290 -34.01031 -32.25320 -31.60043 -30.99980 -28.36110 -26.88270 -25.18462 -24.44125 -23.33189 -22.34181 -21.57397 -20.71255 -20.30359 -18.39849 -17.80346 -16.82389 -16.35858 -16.26832 -15.87199 -15.37267 -15.20251 -14.96837 -14.78045 -14.48741 -14.19305 -14.06483 -13.77281 -13.52182 -13.18026 -12.99157 -12.92785 -12.85377 -12.84464 -12.55936 -12.37386 -12.19361 -11.93086 -11.68831 -11.60622 -11.34995 -11.32216 -10.79424 -10.61917 -10.35460 -10.31686 -9.24140 -9.04955 -8.06291 -6.20177 1.00812 1.40752 1.42381 1.53740 1.70168 1.87850 2.44109 3.19056 3.20490 3.64178 4.01494 4.10590 4.17381 4.20412 4.25610 4.33449 4.38465 4.42463 4.53851 4.60449 4.68006 4.73470 4.77766 4.82565 4.86797 4.91312 4.96782 5.02234 5.02376 5.15239 5.22710 5.24188 5.34408 5.42219 5.48067 5.56918 5.66231 5.78900 6.01252 6.16338 6.21024 6.25750 6.44999 6.50466 6.79620 6.92896 7.47432 8.98482 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033994 B = 0.003004 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.470414 B = 9319.935465 C = 9829.370125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 N -0.378 5.378 4 C 0.058 3.942 5 C -0.245 4.245 6 C -0.022 4.022 7 C 0.067 3.933 8 N -0.547 5.547 9 C 0.064 3.936 10 C -0.111 4.111 11 C -0.105 4.105 12 C 0.052 3.948 13 H -0.001 1.001 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 0.954 3.046 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.082 3.918 23 C 0.041 3.959 24 N -0.331 5.331 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.199 0.801 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.019 0.981 41 H 0.260 0.740 42 H 0.054 0.946 43 H 0.010 0.990 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.108 -11.544 -4.230 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 N -0.161 5.161 4 C -0.088 4.088 5 C -0.257 4.257 6 C -0.061 4.061 7 C -0.061 4.061 8 N -0.271 5.271 9 C -0.063 4.063 10 C -0.149 4.149 11 C -0.143 4.143 12 C 0.034 3.966 13 H 0.017 0.983 14 C -0.574 4.574 15 H 0.067 0.933 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.779 3.221 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.045 4.045 23 C -0.144 4.144 24 N -0.153 5.153 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.142 0.858 30 H 0.216 0.784 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -19.953 -12.243 -4.448 23.829 hybrid contribution 1.977 0.693 -0.485 2.151 sum -17.976 -11.550 -4.933 21.929 Atomic orbital electron populations 1.22001 0.93582 1.03915 1.02114 1.22020 0.96301 0.76203 1.05382 1.48968 1.35487 1.10827 1.20770 1.22843 0.94796 0.94522 0.96660 1.20158 1.08207 0.95871 1.01473 1.19718 0.90563 0.97128 0.98698 1.22083 0.93484 0.95624 0.94867 1.61952 1.02435 1.04411 1.58318 1.22083 0.99627 0.87798 0.96804 1.21590 0.95330 0.98320 0.99619 1.21468 0.94724 0.99929 0.98205 1.18590 0.92186 0.91907 0.93952 0.98318 1.21561 0.93061 1.23049 1.19712 0.93260 1.25719 1.02915 0.94957 0.94948 1.70045 1.33968 1.26447 1.24998 0.85575 0.80358 0.77937 0.78187 1.19284 1.20637 1.20520 1.21951 0.87293 0.99208 0.96072 1.24101 0.95892 0.97867 0.96571 1.77211 1.25108 0.97852 1.15132 0.88298 0.92835 0.93205 0.89459 0.85800 0.78409 0.90800 0.90595 0.91660 0.95973 0.96046 0.88727 0.92902 0.91309 0.92449 0.96176 0.93074 0.92703 0.97218 0.79137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 10.10 71.98 0.73 -1.03 16 2 C 0.12 1.42 7.23 86.38 0.62 2.04 16 3 N -0.38 -7.50 3.68 -348.06 -1.28 -8.78 16 4 C 0.06 1.12 11.36 83.54 0.95 2.07 16 5 C -0.25 -5.47 5.35 -20.15 -0.11 -5.58 16 6 C -0.02 -0.52 5.63 29.85 0.17 -0.35 16 7 C 0.07 1.95 4.94 86.30 0.43 2.37 16 8 N -0.55 -19.69 4.66 -896.39 -4.17 -23.87 16 9 C 0.06 2.16 5.29 86.33 0.46 2.61 16 10 C -0.11 -4.28 6.09 30.65 0.19 -4.09 16 11 C -0.10 -5.14 5.03 30.67 0.15 -4.98 16 12 C 0.05 2.73 2.26 -11.49 -0.03 2.70 16 13 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 14 C -0.54 -30.29 8.56 25.60 0.22 -30.07 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 16 C 0.01 0.75 5.30 84.66 0.45 1.20 16 17 N -0.92 -53.78 11.36 21.45 0.24 -53.53 16 18 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 C 0.08 3.59 4.68 86.32 0.40 3.99 16 23 C 0.04 0.95 11.96 85.23 1.02 1.97 16 24 N -0.33 -8.25 12.42 -57.03 -0.71 -8.95 16 25 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.12 0.73 8.07 -2.39 -0.02 0.71 16 30 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.07 1.64 6.43 -2.39 -0.02 1.63 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.90 7.99 -2.39 -0.02 1.88 16 34 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 35 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.09 2.58 6.21 -2.38 -0.01 2.56 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.06 3.16 6.17 -2.39 -0.01 3.15 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.05 2.37 8.02 -2.39 -0.02 2.35 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.19 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -67.59 349.50 2.70 -64.89 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.95 Total: 11.05 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 5.65 Total: -27.13 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -5.92 Total: -95.14 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -67.59 2.70 -64.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.427 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds