Wall clock time and date at job start Mon Mar 30 2020 02:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47006 * 2 1 4 4 C 1.34952 * 126.03613 * 124.99650 * 3 2 1 5 5 C 1.35317 * 107.74165 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.03893 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46778 * 89.99893 * 6 5 4 8 8 N 1.46909 * 109.47025 * 180.02562 * 7 6 5 9 9 C 1.46846 * 111.00162 * 45.78723 * 8 7 6 10 10 C 1.53030 * 109.52377 * 185.84294 * 9 8 7 11 11 C 1.53123 * 109.28009 * 300.82027 * 10 9 8 12 12 C 1.53118 * 109.15585 * 57.65675 * 11 10 9 13 13 H 1.09002 * 109.53946 * 62.30558 * 12 11 10 14 14 C 1.50702 * 109.50203 * 182.40596 * 12 11 10 15 15 H 1.08001 * 120.00346 * 119.80365 * 14 12 11 16 16 C 1.37871 * 119.99901 * 299.80074 * 14 12 11 17 17 N 1.31515 * 120.00384 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00092 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47139 * 90.00305 * 18 16 14 20 20 H 1.48499 * 109.47084 * 210.00171 * 18 16 14 21 21 H 1.48501 * 109.47183 * 330.00004 * 18 16 14 22 22 C 1.46846 * 111.00243 * 170.00251 * 8 7 6 23 23 C 1.39868 * 107.92331 * 0.26354 * 5 4 3 24 24 N 1.30830 * 108.20183 * 359.55652 * 23 5 4 25 25 H 1.08998 * 109.47578 * 300.00358 * 1 2 3 26 26 H 1.08998 * 109.46907 * 60.00393 * 1 2 3 27 27 H 1.09001 * 109.47116 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47757 * 240.00093 * 2 1 3 29 29 H 1.09000 * 109.47408 * 119.99745 * 2 1 3 30 30 H 1.07991 * 126.12736 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.47007 * 330.00199 * 6 5 4 32 32 H 1.08999 * 109.47519 * 210.00378 * 6 5 4 33 33 H 1.09000 * 109.47102 * 60.00364 * 7 6 5 34 34 H 1.09003 * 109.47357 * 299.99992 * 7 6 5 35 35 H 1.08999 * 109.46373 * 305.86398 * 9 8 7 36 36 H 1.08998 * 109.45881 * 65.82485 * 9 8 7 37 37 H 1.09003 * 109.50272 * 180.88314 * 10 9 8 38 38 H 1.08997 * 109.53617 * 60.78297 * 10 9 8 39 39 H 1.08993 * 109.52379 * 297.75279 * 11 10 9 40 40 H 1.08997 * 109.57561 * 177.58911 * 11 10 9 41 41 H 0.96998 * 120.00420 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.45759 * 294.17597 * 22 8 7 43 43 H 1.09003 * 109.46299 * 54.15067 * 22 8 7 44 44 H 1.08004 * 125.89897 * 179.73453 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9211 0.8940 5 6 3.0720 3.2135 0.5457 6 6 3.9550 4.2000 1.2657 7 6 5.3683 4.1393 0.6828 8 7 6.2292 5.1005 1.3851 9 6 6.0391 5.0132 2.8386 10 6 6.8386 6.1221 3.5264 11 6 8.3213 5.9677 3.1767 12 6 8.4861 6.0138 1.6551 13 1 8.1568 6.9835 1.2819 14 6 9.9353 5.8034 1.2993 15 1 10.2239 4.9649 0.6828 16 6 10.8929 6.6815 1.7609 17 7 10.5417 7.7023 2.5120 18 14 12.6894 6.4204 1.3206 19 1 12.9984 7.1364 0.0568 20 1 13.5481 6.9481 2.4112 21 1 12.9499 4.9691 1.1437 22 6 7.6389 4.9080 1.0214 23 6 2.3082 3.4739 -0.5968 24 7 1.6809 2.3747 -0.9283 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.3189 1.4126 1.7359 31 1 3.9884 3.9509 2.3263 32 1 3.5533 5.2056 1.1411 33 1 5.3349 4.3884 -0.3778 34 1 5.7700 3.1337 0.8075 35 1 4.9812 5.1286 3.0741 36 1 6.3859 4.0424 3.1925 37 1 6.7098 6.0473 4.6062 38 1 6.4831 7.0938 3.1839 39 1 8.6871 5.0128 3.5539 40 1 8.8898 6.7801 3.6293 41 1 11.2154 8.3198 2.8370 42 1 7.9781 3.9376 1.3838 43 1 7.7428 4.9473 -0.0629 44 1 2.2490 4.4184 -1.1172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:07 Heat of formation + Delta-G solvation = 48.422630 kcal Electronic energy + Delta-G solvation = -21292.861897 eV Core-core repulsion = 18245.469164 eV Total energy + Delta-G solvation = -3047.392733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11175 -39.85098 -36.30820 -35.29874 -33.98860 -32.28387 -31.56389 -31.00386 -28.34504 -26.89504 -25.24335 -24.50740 -23.37396 -22.28825 -21.56075 -20.67583 -20.27376 -18.39820 -17.82765 -16.86454 -16.38210 -16.28064 -15.84727 -15.42045 -15.25771 -14.89773 -14.84176 -14.45296 -14.17023 -14.09333 -13.74657 -13.50024 -13.29527 -12.97216 -12.90681 -12.84945 -12.78045 -12.52112 -12.37896 -12.19912 -11.95395 -11.75166 -11.67470 -11.33761 -11.22536 -10.81524 -10.61307 -10.35142 -10.32214 -9.22567 -9.03772 -8.06223 -6.20441 0.99986 1.41843 1.42156 1.52395 1.69494 1.87602 2.43974 3.19998 3.20469 3.63191 3.99853 4.10134 4.17554 4.22131 4.26724 4.29204 4.37390 4.43442 4.52209 4.53945 4.67768 4.71392 4.78014 4.82261 4.85152 4.95321 4.96165 5.00658 5.01969 5.18142 5.22114 5.24472 5.29460 5.44009 5.46621 5.56419 5.65938 5.77251 6.01210 6.17250 6.20567 6.25795 6.45696 6.50660 6.79282 6.92543 7.47193 8.98324 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036384 B = 0.002978 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.386349 B = 9399.702404 C = 9714.821371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 N -0.378 5.378 4 C 0.057 3.943 5 C -0.245 4.245 6 C -0.029 4.029 7 C 0.068 3.932 8 N -0.550 5.550 9 C 0.062 3.938 10 C -0.112 4.112 11 C -0.104 4.104 12 C 0.052 3.948 13 H -0.004 1.004 14 C -0.537 4.537 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 0.954 3.046 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.083 3.917 23 C 0.042 3.958 24 N -0.331 5.331 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.199 0.801 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.023 0.977 35 H 0.100 0.900 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.021 0.979 40 H 0.056 0.944 41 H 0.260 0.740 42 H 0.013 0.987 43 H 0.050 0.950 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.737 -14.600 -0.433 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 N -0.161 5.161 4 C -0.089 4.089 5 C -0.257 4.257 6 C -0.067 4.067 7 C -0.060 4.060 8 N -0.274 5.274 9 C -0.066 4.066 10 C -0.150 4.150 11 C -0.143 4.143 12 C 0.033 3.967 13 H 0.014 0.986 14 C -0.575 4.575 15 H 0.068 0.932 16 C -0.185 4.185 17 N -0.554 5.554 18 Si 0.779 3.221 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.045 4.045 23 C -0.143 4.143 24 N -0.153 5.153 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.142 0.858 30 H 0.216 0.784 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.118 0.882 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.069 0.931 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -19.675 -14.718 -1.326 24.606 hybrid contribution 2.127 -0.123 0.401 2.168 sum -17.547 -14.840 -0.925 23.000 Atomic orbital electron populations 1.22000 0.93565 1.03916 1.02134 1.22017 0.96318 0.76200 1.05365 1.48970 1.35574 1.10856 1.20652 1.22813 0.94844 0.94521 0.96741 1.20152 1.07979 0.95842 1.01734 1.19888 0.90806 0.97562 0.98488 1.22095 0.92889 0.92665 0.98348 1.61999 1.06282 1.51396 1.07771 1.22163 1.00749 0.96694 0.86983 1.21609 0.95449 0.98698 0.99259 1.21458 0.94918 0.99371 0.98505 1.18589 0.92441 0.92951 0.92690 0.98604 1.21533 0.93519 1.10937 1.31549 0.93247 1.25720 1.02927 0.94871 0.95004 1.70037 1.34587 1.15176 1.35648 0.85627 0.80137 0.78439 0.77858 1.20196 1.20758 1.19376 1.21941 0.86944 0.96952 0.98631 1.24123 0.95758 0.97825 0.96612 1.77222 1.25260 0.97762 1.15037 0.92798 0.93220 0.88299 0.89494 0.85788 0.78447 0.90154 0.90488 0.91905 0.95874 0.88212 0.95668 0.91150 0.93143 0.95972 0.92507 0.93060 0.96883 0.93098 0.79113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.10 71.98 0.73 -0.99 16 2 C 0.12 1.39 7.23 86.38 0.62 2.02 16 3 N -0.38 -7.42 3.68 -348.08 -1.28 -8.70 16 4 C 0.06 1.08 11.36 83.54 0.95 2.03 16 5 C -0.25 -5.42 5.35 -20.14 -0.11 -5.52 16 6 C -0.03 -0.66 4.95 29.85 0.15 -0.51 16 7 C 0.07 1.97 5.26 86.30 0.45 2.42 16 8 N -0.55 -19.90 4.81 -896.36 -4.31 -24.21 16 9 C 0.06 2.00 4.85 86.32 0.42 2.42 16 10 C -0.11 -4.30 6.09 30.65 0.19 -4.11 16 11 C -0.10 -5.07 5.03 30.67 0.15 -4.92 16 12 C 0.05 2.72 2.26 -11.49 -0.03 2.70 16 13 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 14 C -0.54 -30.49 8.56 25.60 0.22 -30.27 16 15 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 16 C 0.01 0.76 5.30 84.65 0.45 1.21 16 17 N -0.92 -53.96 11.36 21.45 0.24 -53.71 16 18 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 C 0.08 3.64 4.65 86.33 0.40 4.04 16 23 C 0.04 0.99 11.96 85.24 1.02 2.01 16 24 N -0.33 -8.26 12.42 -57.03 -0.71 -8.97 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.12 0.68 8.07 -2.39 -0.02 0.66 16 30 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.08 1.65 6.21 -2.39 -0.01 1.63 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.02 0.68 8.08 -2.39 -0.02 0.66 16 35 H 0.10 2.60 5.81 -2.39 -0.01 2.59 16 36 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 3.12 6.16 -2.39 -0.01 3.11 16 41 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.05 2.25 8.12 -2.39 -0.02 2.23 16 44 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -68.21 348.40 2.54 -65.67 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.95 Total: 11.00 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 5.62 Total: -27.49 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -6.05 Total: -95.59 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.21 2.54 -65.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.095 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds