Wall clock time and date at job start Mon Mar 30 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46693 * 2 1 4 4 N 1.46502 * 109.46660 * 184.64370 * 3 2 1 5 5 N 1.40084 * 126.03882 * 275.04327 * 4 3 2 6 6 C 1.30833 * 108.20727 * 179.97438 * 5 4 3 7 7 C 1.39874 * 108.20155 * 359.78605 * 6 5 4 8 8 C 1.34944 * 126.03739 * 95.02709 * 4 3 2 9 9 C 1.50705 * 126.12851 * 359.97438 * 8 4 3 10 10 N 1.46495 * 109.47198 * 85.81054 * 9 8 4 11 11 C 1.36935 * 120.00554 * 264.72804 * 10 9 8 12 12 H 1.07993 * 120.00257 * 140.40055 * 11 10 9 13 13 C 1.38819 * 119.99490 * 320.40215 * 11 10 9 14 14 N 1.31617 * 119.99827 * 164.49475 * 13 11 10 15 15 Si 1.86799 * 120.00038 * 344.49114 * 13 11 10 16 16 H 1.48503 * 109.46774 * 95.36888 * 15 13 11 17 17 H 1.48496 * 109.47105 * 215.36442 * 15 13 11 18 18 H 1.48495 * 109.47096 * 335.36998 * 15 13 11 19 19 C 1.46501 * 119.99715 * 84.72581 * 10 9 8 20 20 C 1.55241 * 110.58332 * 233.38359 * 19 10 9 21 21 C 1.54884 * 102.58947 * 203.33771 * 20 19 10 22 22 C 1.54271 * 104.31141 * 37.93511 * 21 20 19 23 23 C 1.53867 * 106.60047 * 336.32161 * 22 21 20 24 24 H 1.09005 * 109.46818 * 60.00509 * 1 2 3 25 25 H 1.09003 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47284 * 300.00159 * 1 2 3 27 27 H 1.09001 * 109.47680 * 239.99903 * 2 1 3 28 28 H 1.08997 * 109.47299 * 119.99837 * 2 1 3 29 29 H 1.08995 * 109.46997 * 64.64653 * 3 2 1 30 30 H 1.09000 * 109.47275 * 304.63908 * 3 2 1 31 31 H 1.07997 * 125.90112 * 180.02562 * 6 5 4 32 32 H 1.08001 * 126.03746 * 180.23760 * 7 6 5 33 33 H 1.09005 * 109.46733 * 325.81565 * 9 8 4 34 34 H 1.08999 * 109.47381 * 205.81374 * 9 8 4 35 35 H 0.97001 * 120.00415 * 179.97438 * 14 13 11 36 36 H 1.09005 * 110.43733 * 355.97091 * 19 10 9 37 37 H 1.08997 * 110.89489 * 85.04565 * 20 19 10 38 38 H 1.08998 * 110.76526 * 321.57094 * 20 19 10 39 39 H 1.08997 * 110.49216 * 279.19119 * 21 20 19 40 40 H 1.09007 * 110.48590 * 156.67323 * 21 20 19 41 41 H 1.09000 * 110.03282 * 95.60472 * 22 21 20 42 42 H 1.09009 * 110.02985 * 216.98403 * 22 21 20 43 43 H 1.08998 * 110.03617 * 119.28248 * 23 22 21 44 44 H 1.09003 * 110.03294 * 240.67258 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5007 1.4441 -0.1118 5 7 4.4084 1.3150 0.9472 6 6 5.6199 1.3617 0.4553 7 6 5.5226 1.5169 -0.9314 8 6 4.2094 1.5698 -1.2533 9 6 3.6402 1.7330 -2.6391 10 7 3.3725 3.1507 -2.8933 11 6 2.1197 3.6602 -2.6787 12 1 2.0031 4.6405 -2.2410 13 6 0.9995 2.9164 -3.0238 14 7 -0.1832 3.2509 -2.5530 15 14 1.1707 1.4410 -4.1566 16 1 1.2940 0.2044 -3.3435 17 1 -0.0284 1.3435 -5.0271 18 1 2.3827 1.6020 -4.9994 19 6 4.4451 4.0234 -3.3770 20 6 4.5866 5.2714 -2.4645 21 6 5.2616 6.3015 -3.4037 22 6 4.6054 6.0524 -4.7775 23 6 4.0863 4.6040 -4.7605 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7461 1.9318 0.9286 30 1 1.6103 1.9798 -0.8455 31 1 6.5366 1.2887 1.0215 32 1 6.3496 1.5847 -1.6227 33 1 2.7116 1.1679 -2.7194 34 1 4.3562 1.3614 -3.3721 35 1 -0.9660 2.7314 -2.7944 36 1 5.3874 3.4776 -3.4250 37 1 5.2233 5.0556 -1.6066 38 1 3.6081 5.6266 -2.1412 39 1 6.3357 6.1236 -3.4562 40 1 5.0603 7.3174 -3.0635 41 1 3.7765 6.7443 -4.9264 42 1 5.3422 6.1765 -5.5713 43 1 3.0055 4.5930 -4.9011 44 1 4.5707 4.0245 -5.5464 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597013811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:22 Heat of formation + Delta-G solvation = 82.110245 kcal Electronic energy + Delta-G solvation = -23272.604268 eV Core-core repulsion = 20226.672340 eV Total energy + Delta-G solvation = -3045.931929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.55913 -37.85325 -35.05919 -34.49404 -31.86721 -30.79928 -29.88356 -27.97984 -27.16546 -25.79908 -25.41627 -22.71225 -21.56579 -20.35027 -19.94198 -19.19947 -19.00646 -16.89326 -15.97866 -15.51955 -15.28779 -14.74752 -14.52337 -14.18087 -13.75165 -13.40735 -13.14334 -12.88940 -12.81785 -12.64003 -12.43336 -12.01984 -11.60808 -11.53717 -11.37410 -11.12855 -10.95421 -10.83344 -10.60866 -10.57873 -10.41279 -10.39207 -10.24104 -9.96580 -9.83631 -9.71049 -9.56137 -8.73507 -8.51856 -7.84990 -6.94710 -6.14161 -3.62245 2.58313 3.14085 3.23964 3.34296 3.36841 3.45681 4.32796 4.89762 5.09249 5.20163 5.28656 5.32483 5.33907 5.45179 5.51430 5.56501 5.62937 5.76865 5.94527 6.02298 6.06611 6.13076 6.15663 6.17646 6.20950 6.23668 6.28932 6.34709 6.37536 6.47199 6.49437 6.52076 6.55392 6.69937 6.71956 6.84464 6.94434 7.03778 7.15035 7.32267 7.76973 7.91685 8.27797 8.43455 8.83065 9.52296 9.95476 10.99069 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.009113 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.316939 B = 3071.830592 C = 4317.837876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.117 3.883 4 N -0.347 5.347 5 N -0.318 5.318 6 C 0.034 3.966 7 C -0.295 4.295 8 C 0.100 3.900 9 C 0.185 3.815 10 N -0.589 5.589 11 C -0.260 4.260 12 H 0.085 0.915 13 C 0.038 3.962 14 N -0.896 5.896 15 Si 0.865 3.135 16 H -0.283 1.283 17 H -0.299 1.299 18 H -0.264 1.264 19 C 0.178 3.822 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.137 4.137 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.170 0.830 32 H 0.134 0.866 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.265 0.735 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.354 -2.170 -0.123 7.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.004 4.004 4 N -0.128 5.128 5 N -0.140 5.140 6 C -0.151 4.151 7 C -0.326 4.326 8 C -0.033 4.033 9 C 0.057 3.943 10 N -0.309 5.309 11 C -0.389 4.389 12 H 0.103 0.897 13 C -0.163 4.163 14 N -0.537 5.537 15 Si 0.695 3.305 16 H -0.211 1.211 17 H -0.227 1.227 18 H -0.188 1.188 19 C 0.071 3.929 20 C -0.169 4.169 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.177 4.177 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.188 0.812 32 H 0.152 0.848 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.281 -2.303 0.938 6.755 hybrid contribution 0.531 -0.746 -1.257 1.555 sum 6.812 -3.049 -0.318 7.470 Atomic orbital electron populations 1.21667 0.94498 1.01380 1.02968 1.21866 0.96754 0.96707 1.01990 1.22154 0.74046 0.97672 1.06539 1.48563 1.06237 1.54335 1.03674 1.77176 0.99000 1.25496 1.12323 1.23574 0.95747 1.01385 0.94398 1.21059 0.95457 1.20358 0.95679 1.22494 0.92080 0.96946 0.91735 1.20059 0.98484 0.88164 0.87589 1.44168 1.08247 1.03893 1.74580 1.18765 0.80220 1.04151 1.35793 0.89735 1.25499 0.95143 0.98259 0.97403 1.69797 0.98804 1.40806 1.44289 0.87121 0.77547 0.83098 0.82730 1.21063 1.22707 1.18831 1.21299 0.90022 0.90441 0.91147 1.22869 1.00758 0.96043 0.97274 1.22274 0.98899 0.98889 0.95969 1.22032 0.99243 0.97768 0.96558 1.22563 1.02794 0.94218 0.98076 0.91531 0.92852 0.92442 0.92142 0.92023 0.90076 0.84684 0.81250 0.84783 0.91649 0.91583 0.92468 0.92398 0.92955 0.90464 0.92657 0.92736 0.92452 0.93190 0.90028 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.38 6.26 -26.73 -0.17 -2.54 16 3 C 0.12 2.36 6.19 -4.04 -0.02 2.33 16 4 N -0.35 -7.20 3.61 -57.14 -0.21 -7.41 16 5 N -0.32 -6.40 12.58 30.62 0.39 -6.02 16 6 C 0.03 0.60 12.03 -17.37 -0.21 0.39 16 7 C -0.30 -5.34 10.72 -40.01 -0.43 -5.77 16 8 C 0.10 2.01 6.51 -82.26 -0.54 1.48 16 9 C 0.18 3.81 4.03 -5.19 -0.02 3.79 16 10 N -0.59 -12.69 2.10 -164.92 -0.35 -13.04 16 11 C -0.26 -6.42 7.52 -15.06 -0.11 -6.53 16 12 H 0.09 2.33 6.57 -52.49 -0.34 1.98 16 13 C 0.04 0.95 3.88 -17.43 -0.07 0.89 16 14 N -0.90 -24.14 13.97 55.49 0.78 -23.36 16 15 Si 0.86 20.10 24.71 -169.99 -4.20 15.90 16 16 H -0.28 -6.36 6.77 56.52 0.38 -5.98 16 17 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.26 -6.02 7.01 56.52 0.40 -5.63 16 19 C 0.18 3.35 3.38 -66.08 -0.22 3.12 16 20 C -0.13 -2.36 6.42 -24.55 -0.16 -2.52 16 21 C -0.12 -1.84 6.82 -25.07 -0.17 -2.01 16 22 C -0.12 -1.81 6.80 -25.61 -0.17 -1.98 16 23 C -0.14 -2.46 6.43 -25.61 -0.16 -2.62 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.14 3.08 4.74 -51.93 -0.25 2.84 16 31 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.13 2.11 8.06 -52.49 -0.42 1.68 16 33 H 0.07 1.45 2.98 -51.93 -0.15 1.29 16 34 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 35 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.06 1.02 7.95 -51.93 -0.41 0.61 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.60 6.30 -51.93 -0.33 1.27 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 43 H 0.08 1.70 7.19 -51.93 -0.37 1.32 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -26.82 340.70 -7.91 -34.72 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.36 Total: 8.04 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.09 Total: -13.97 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.61 Total: -49.83 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.20 Total: 15.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.82 -7.91 -34.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597013811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.833 kcal (2) G-P(sol) polarization free energy of solvation -26.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds