Wall clock time and date at job start Mon Mar 30 2020 01:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46693 * 2 1 4 4 N 1.46502 * 109.46660 * 184.64370 * 3 2 1 5 5 N 1.40084 * 126.03882 * 275.04327 * 4 3 2 6 6 C 1.30833 * 108.20727 * 179.97438 * 5 4 3 7 7 C 1.39874 * 108.20155 * 359.78605 * 6 5 4 8 8 C 1.34944 * 126.03739 * 95.02709 * 4 3 2 9 9 C 1.50705 * 126.12851 * 359.97438 * 8 4 3 10 10 N 1.46495 * 109.47198 * 85.81054 * 9 8 4 11 11 C 1.36935 * 120.00554 * 264.72804 * 10 9 8 12 12 H 1.07993 * 120.00257 * 140.40055 * 11 10 9 13 13 C 1.38819 * 119.99490 * 320.40215 * 11 10 9 14 14 N 1.31617 * 119.99827 * 164.49475 * 13 11 10 15 15 Si 1.86799 * 120.00038 * 344.49114 * 13 11 10 16 16 H 1.48503 * 109.46774 * 95.36888 * 15 13 11 17 17 H 1.48496 * 109.47105 * 215.36442 * 15 13 11 18 18 H 1.48495 * 109.47096 * 335.36998 * 15 13 11 19 19 C 1.46501 * 119.99715 * 84.72581 * 10 9 8 20 20 C 1.55241 * 110.58332 * 233.38359 * 19 10 9 21 21 C 1.54884 * 102.58947 * 203.33771 * 20 19 10 22 22 C 1.54271 * 104.31141 * 37.93511 * 21 20 19 23 23 C 1.53867 * 106.60047 * 336.32161 * 22 21 20 24 24 H 1.09005 * 109.46818 * 60.00509 * 1 2 3 25 25 H 1.09003 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47284 * 300.00159 * 1 2 3 27 27 H 1.09001 * 109.47680 * 239.99903 * 2 1 3 28 28 H 1.08997 * 109.47299 * 119.99837 * 2 1 3 29 29 H 1.08995 * 109.46997 * 64.64653 * 3 2 1 30 30 H 1.09000 * 109.47275 * 304.63908 * 3 2 1 31 31 H 1.07997 * 125.90112 * 180.02562 * 6 5 4 32 32 H 1.08001 * 126.03746 * 180.23760 * 7 6 5 33 33 H 1.09005 * 109.46733 * 325.81565 * 9 8 4 34 34 H 1.08999 * 109.47381 * 205.81374 * 9 8 4 35 35 H 0.97001 * 120.00415 * 179.97438 * 14 13 11 36 36 H 1.09005 * 110.43733 * 355.97091 * 19 10 9 37 37 H 1.08997 * 110.89489 * 85.04565 * 20 19 10 38 38 H 1.08998 * 110.76526 * 321.57094 * 20 19 10 39 39 H 1.08997 * 110.49216 * 279.19119 * 21 20 19 40 40 H 1.09007 * 110.48590 * 156.67323 * 21 20 19 41 41 H 1.09000 * 110.03282 * 95.60472 * 22 21 20 42 42 H 1.09009 * 110.02985 * 216.98403 * 22 21 20 43 43 H 1.08998 * 110.03617 * 119.28248 * 23 22 21 44 44 H 1.09003 * 110.03294 * 240.67258 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5007 1.4441 -0.1118 5 7 4.4084 1.3150 0.9472 6 6 5.6199 1.3617 0.4553 7 6 5.5226 1.5169 -0.9314 8 6 4.2094 1.5698 -1.2533 9 6 3.6402 1.7330 -2.6391 10 7 3.3725 3.1507 -2.8933 11 6 2.1197 3.6602 -2.6787 12 1 2.0031 4.6405 -2.2410 13 6 0.9995 2.9164 -3.0238 14 7 -0.1832 3.2509 -2.5530 15 14 1.1707 1.4410 -4.1566 16 1 1.2940 0.2044 -3.3435 17 1 -0.0284 1.3435 -5.0271 18 1 2.3827 1.6020 -4.9994 19 6 4.4451 4.0234 -3.3770 20 6 4.5866 5.2714 -2.4645 21 6 5.2616 6.3015 -3.4037 22 6 4.6054 6.0524 -4.7775 23 6 4.0863 4.6040 -4.7605 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7461 1.9318 0.9286 30 1 1.6103 1.9798 -0.8455 31 1 6.5366 1.2887 1.0215 32 1 6.3496 1.5847 -1.6227 33 1 2.7116 1.1679 -2.7194 34 1 4.3562 1.3614 -3.3721 35 1 -0.9660 2.7314 -2.7944 36 1 5.3874 3.4776 -3.4250 37 1 5.2233 5.0556 -1.6066 38 1 3.6081 5.6266 -2.1412 39 1 6.3357 6.1236 -3.4562 40 1 5.0603 7.3174 -3.0635 41 1 3.7765 6.7443 -4.9264 42 1 5.3422 6.1765 -5.5713 43 1 3.0055 4.5930 -4.9011 44 1 4.5707 4.0245 -5.5464 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597013811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:21 Heat of formation + Delta-G solvation = 68.387396 kcal Electronic energy + Delta-G solvation = -23273.199336 eV Core-core repulsion = 20226.672340 eV Total energy + Delta-G solvation = -3046.526996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04316 -39.35319 -36.59313 -36.01345 -33.74836 -32.25767 -31.41344 -29.37442 -28.64603 -27.42478 -26.98621 -24.39419 -22.98878 -21.81221 -21.33550 -20.73300 -20.54516 -18.62314 -17.62814 -17.06992 -16.92263 -16.23293 -15.99398 -15.74949 -15.21137 -14.87661 -14.68843 -14.56587 -14.33475 -14.06383 -13.91506 -13.66813 -13.16155 -13.03860 -12.85211 -12.81729 -12.43754 -12.31797 -12.19310 -11.98659 -11.88863 -11.85668 -11.76828 -11.60548 -11.35943 -11.19972 -11.10849 -10.61187 -10.08759 -9.32057 -8.72002 -8.13133 -5.58128 1.06990 1.27611 1.42159 1.48490 1.74846 2.05692 2.39721 3.14921 3.32240 3.70782 3.83864 3.91986 3.99001 4.06592 4.10735 4.12685 4.25806 4.27616 4.50694 4.60878 4.63029 4.64683 4.76167 4.80662 4.87138 4.89315 4.90986 4.94019 4.99408 4.99671 5.10708 5.17412 5.23197 5.27753 5.32309 5.39193 5.52917 5.61943 5.64685 5.95904 6.01161 6.25017 6.28366 6.96012 7.01462 7.63325 8.07188 9.03950 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.009113 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.316939 B = 3071.830592 C = 4317.837876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.118 3.882 4 N -0.363 5.363 5 N -0.344 5.344 6 C 0.041 3.959 7 C -0.285 4.285 8 C 0.076 3.924 9 C 0.184 3.816 10 N -0.596 5.596 11 C -0.237 4.237 12 H 0.043 0.957 13 C 0.002 3.998 14 N -0.937 5.937 15 Si 0.913 3.087 16 H -0.274 1.274 17 H -0.314 1.314 18 H -0.252 1.252 19 C 0.170 3.830 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.136 4.136 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.212 0.788 32 H 0.164 0.836 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.262 0.738 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.500 -3.060 -0.604 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.004 4.004 4 N -0.145 5.145 5 N -0.166 5.166 6 C -0.144 4.144 7 C -0.316 4.316 8 C -0.055 4.055 9 C 0.057 3.943 10 N -0.317 5.317 11 C -0.367 4.367 12 H 0.061 0.939 13 C -0.195 4.195 14 N -0.580 5.580 15 Si 0.743 3.257 16 H -0.201 1.201 17 H -0.244 1.244 18 H -0.176 1.176 19 C 0.064 3.936 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.175 4.175 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.124 0.876 31 H 0.228 0.772 32 H 0.181 0.819 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.468 -3.193 0.449 10.002 hybrid contribution -0.353 -0.410 -1.022 1.156 sum 9.115 -3.603 -0.573 9.818 Atomic orbital electron populations 1.21642 0.93457 1.02813 1.02113 1.21778 0.97544 0.94925 1.01967 1.22009 0.74577 0.98937 1.04835 1.48649 1.06289 1.55379 1.04175 1.77160 1.00023 1.26704 1.12680 1.24281 0.96217 0.99236 0.94625 1.21425 0.95146 1.18525 0.96458 1.22562 0.93135 0.98486 0.91342 1.20067 0.98358 0.87092 0.88825 1.44232 1.07714 1.04722 1.75005 1.18402 0.81915 1.02367 1.34034 0.93899 1.25822 0.94743 1.00424 0.98543 1.69903 0.99517 1.42477 1.46135 0.86333 0.77004 0.81274 0.81099 1.20112 1.24362 1.17626 1.21550 0.89981 0.90419 0.91612 1.22758 0.99027 0.96980 0.97910 1.22238 0.99976 0.98218 0.94544 1.22010 0.99717 0.95638 0.97770 1.22506 1.00609 0.96388 0.97984 0.94148 0.90217 0.91530 0.93088 0.90816 0.90668 0.87608 0.77169 0.81894 0.93464 0.89075 0.92826 0.90018 0.93103 0.94360 0.90000 0.91942 0.93306 0.90193 0.93790 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.91 71.98 0.71 -3.85 16 2 C -0.12 -4.35 6.26 30.60 0.19 -4.16 16 3 C 0.12 4.87 6.19 86.38 0.53 5.41 16 4 N -0.36 -14.93 3.61 -334.69 -1.21 -16.14 16 5 N -0.34 -13.31 12.58 -57.02 -0.72 -14.03 16 6 C 0.04 1.31 12.03 85.24 1.03 2.34 16 7 C -0.29 -9.37 10.72 21.99 0.24 -9.13 16 8 C 0.08 2.96 6.51 41.41 0.27 3.23 16 9 C 0.18 7.36 4.03 85.64 0.35 7.71 16 10 N -0.60 -25.64 2.10 -675.67 -1.42 -27.06 16 11 C -0.24 -12.18 7.52 84.04 0.63 -11.55 16 12 H 0.04 2.55 6.57 -2.91 -0.02 2.53 16 13 C 0.00 0.10 3.88 84.86 0.33 0.43 16 14 N -0.94 -53.19 13.97 21.65 0.30 -52.89 16 15 Si 0.91 42.36 24.71 68.60 1.69 44.06 16 16 H -0.27 -12.16 6.77 99.48 0.67 -11.48 16 17 H -0.31 -15.25 7.11 99.48 0.71 -14.55 16 18 H -0.25 -11.08 7.01 99.48 0.70 -10.39 16 19 C 0.17 6.15 3.38 46.19 0.16 6.31 16 20 C -0.13 -4.54 6.42 32.01 0.21 -4.33 16 21 C -0.11 -3.07 6.82 31.67 0.22 -2.86 16 22 C -0.11 -3.21 6.80 31.32 0.21 -3.00 16 23 C -0.14 -4.66 6.43 31.32 0.20 -4.46 16 24 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.11 5.05 4.74 -2.39 -0.01 5.04 16 31 H 0.21 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 33 H 0.05 2.07 2.98 -2.38 -0.01 2.06 16 34 H 0.09 3.15 8.09 -2.39 -0.02 3.13 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.08 2.59 7.95 -2.38 -0.02 2.57 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.04 1.64 6.30 -2.39 -0.02 1.63 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.04 1.84 7.19 -2.39 -0.02 1.82 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -60.70 340.70 4.84 -55.86 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.92 Total: 28.11 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 5.27 Total: -17.92 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -3.04 Total: -110.11 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.69 Total: 44.06 kcal Total: -60.70 4.84 -55.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597013811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.247 kcal (2) G-P(sol) polarization free energy of solvation -60.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds