Wall clock time and date at job start Mon Mar 30 2020 01:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47243 * 2 1 4 4 N 1.46492 * 109.47490 * 180.02562 * 3 2 1 5 5 C 1.34946 * 126.04242 * 125.25970 * 4 3 2 6 6 C 1.35311 * 107.74787 * 180.14699 * 5 4 3 7 7 C 1.50703 * 126.03902 * 179.87553 * 6 5 4 8 8 N 1.46898 * 109.47016 * 269.71943 * 7 6 5 9 9 C 1.46852 * 110.99758 * 294.20710 * 8 7 6 10 10 C 1.53044 * 109.52198 * 174.16640 * 9 8 7 11 11 C 1.53112 * 109.28010 * 59.17582 * 10 9 8 12 12 C 1.53116 * 109.16591 * 302.34710 * 11 10 9 13 13 H 1.09004 * 109.53383 * 297.69623 * 12 11 10 14 14 C 1.50694 * 109.50594 * 177.59490 * 12 11 10 15 15 H 1.08000 * 120.00563 * 240.19687 * 14 12 11 16 16 C 1.37885 * 119.99902 * 60.19850 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.46849 * 111.00167 * 170.00047 * 8 7 6 23 23 C 1.39860 * 107.92217 * 359.61393 * 6 5 4 24 24 N 1.30835 * 108.20183 * 0.23849 * 23 6 5 25 25 H 1.08996 * 109.47033 * 299.99650 * 1 2 3 26 26 H 1.08994 * 109.47084 * 60.00124 * 1 2 3 27 27 H 1.09000 * 109.46726 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47017 * 240.00317 * 2 1 3 29 29 H 1.09000 * 109.47524 * 120.00414 * 2 1 3 30 30 H 1.09006 * 109.46855 * 60.00218 * 3 2 1 31 31 H 1.09000 * 109.47199 * 300.00613 * 3 2 1 32 32 H 1.08000 * 126.12222 * 359.97438 * 5 4 3 33 33 H 1.08997 * 109.47310 * 149.71435 * 7 6 5 34 34 H 1.09004 * 109.47247 * 29.71171 * 7 6 5 35 35 H 1.08998 * 109.46190 * 294.17319 * 9 8 7 36 36 H 1.08994 * 109.46462 * 54.14796 * 9 8 7 37 37 H 1.08999 * 109.50002 * 179.12318 * 10 9 8 38 38 H 1.09002 * 109.50074 * 299.23514 * 10 9 8 39 39 H 1.09003 * 109.52299 * 182.44001 * 11 10 9 40 40 H 1.09001 * 109.52333 * 62.25375 * 11 10 9 41 41 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.46434 * 65.81575 * 22 8 7 43 43 H 1.08994 * 109.46147 * 305.85189 * 22 8 7 44 44 H 1.08007 * 125.90199 * 180.26421 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2986 2.0726 -0.8918 6 6 5.5834 1.8247 -0.5475 7 6 6.8075 2.3290 -1.2677 8 7 7.2050 1.3584 -2.2962 9 6 7.6464 0.0972 -1.6870 10 6 7.9130 -0.9352 -2.7849 11 6 8.9904 -0.3995 -3.7318 12 6 8.5269 0.9381 -4.3153 13 1 7.6188 0.7860 -4.8988 14 6 9.6068 1.5012 -5.2028 15 1 10.0468 2.4609 -4.9754 16 6 10.0331 0.7911 -6.3051 17 7 9.4976 -0.3778 -6.5818 18 14 11.3713 1.4895 -7.4056 19 1 10.7523 2.3059 -8.4806 20 1 12.2813 2.3415 -6.5986 21 1 12.1441 0.3760 -8.0125 22 6 8.2425 1.9162 -3.1732 23 6 5.5749 1.0228 0.5983 24 7 4.3295 0.7931 0.9271 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9674 2.6659 -1.7313 33 1 7.6218 2.4568 -0.5545 34 1 6.5834 3.2861 -1.7387 35 1 8.5612 0.2685 -1.1198 36 1 6.8695 -0.2751 -1.0194 37 1 8.2555 -1.8663 -2.3333 38 1 6.9951 -1.1173 -3.3439 39 1 9.1526 -1.1128 -4.5398 40 1 9.9198 -0.2541 -3.1811 41 1 9.7973 -0.8772 -7.3575 42 1 9.1545 2.0790 -2.5989 43 1 7.8985 2.8650 -3.5848 44 1 6.4459 0.6567 1.1217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:14 Heat of formation + Delta-G solvation = 63.369035 kcal Electronic energy + Delta-G solvation = -21594.729234 eV Core-core repulsion = 18547.984625 eV Total energy + Delta-G solvation = -3046.744608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12435 -38.01825 -35.58268 -33.83595 -32.02805 -31.44492 -30.05466 -29.55551 -26.87124 -24.98654 -24.73199 -22.42020 -21.86579 -21.40230 -20.48025 -19.73371 -18.48231 -16.89108 -16.28282 -15.76883 -15.15674 -14.65550 -14.44334 -14.33112 -14.16036 -13.66166 -13.29323 -13.10968 -12.91526 -12.54619 -12.53880 -12.26856 -12.19353 -11.83819 -11.67917 -11.52175 -11.20987 -11.11246 -10.91941 -10.65629 -10.61091 -10.29320 -10.03000 -9.76581 -9.40331 -9.29256 -8.98060 -8.63486 -8.27000 -8.23262 -7.49761 -5.92790 -3.98762 2.00917 2.55362 2.92964 3.33444 3.40133 3.43176 4.31768 4.46315 4.59108 4.80377 4.82973 4.96967 4.98637 5.13038 5.19529 5.35108 5.37181 5.54145 5.56492 5.69077 5.74838 5.85553 5.90462 5.94045 5.98157 6.05098 6.21760 6.36011 6.38487 6.51194 6.60557 6.76721 6.83154 6.84769 7.05706 7.11757 7.30677 7.48754 7.78115 7.80822 7.83517 7.94623 8.15537 8.24285 8.54421 9.05717 9.65201 11.13114 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029346 B = 0.003390 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.918459 B = 8258.394569 C = 8453.671182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.137 3.863 4 N -0.378 5.378 5 C 0.068 3.932 6 C -0.218 4.218 7 C 0.130 3.870 8 N -0.535 5.535 9 C 0.065 3.935 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.033 0.967 14 C -0.513 4.513 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.275 1.275 21 H -0.287 1.287 22 C 0.068 3.932 23 C 0.053 3.947 24 N -0.302 5.302 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.259 0.741 42 H 0.018 0.982 43 H 0.058 0.942 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.027 2.970 13.127 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.016 3.984 4 N -0.161 5.161 5 C -0.078 4.078 6 C -0.229 4.229 7 C 0.001 3.999 8 N -0.259 5.259 9 C -0.063 4.063 10 C -0.155 4.155 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.051 0.949 14 C -0.552 4.552 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.200 1.200 21 H -0.213 1.213 22 C -0.059 4.059 23 C -0.134 4.134 24 N -0.123 5.123 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.189 0.811 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.363 2.157 13.526 20.582 hybrid contribution 2.023 0.876 -0.773 2.336 sum -13.340 3.033 12.753 18.703 Atomic orbital electron populations 1.21710 0.94644 1.02427 1.01966 1.21803 0.96138 0.95661 1.03897 1.21710 0.74531 0.98788 1.03383 1.48546 1.06043 1.39750 1.21739 1.22303 0.90820 0.99155 0.95478 1.20011 0.94591 1.08255 1.00084 1.20274 0.92150 0.95134 0.92341 1.62022 1.41346 1.03695 1.18853 1.22009 0.97067 0.90971 0.96241 1.21664 1.00730 0.96029 0.97040 1.21641 0.94557 1.01054 0.97547 1.18646 0.96504 0.90431 0.90734 0.94892 1.21170 1.20367 1.04415 1.09278 0.92872 1.24940 0.96578 0.94921 0.97451 1.69902 1.42591 1.12789 1.27459 0.86643 0.82105 0.78610 0.80895 1.20759 1.20034 1.21325 1.22303 0.90252 0.98793 0.94578 1.23748 0.95001 0.98063 0.96577 1.77238 1.01516 1.19481 1.14068 0.92467 0.92412 0.92025 0.91212 0.90525 0.90239 0.88848 0.81139 0.94935 0.90823 0.96200 0.92178 0.93798 0.92374 0.89289 0.95227 0.93130 0.96400 0.92391 0.80656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.57 16 2 C -0.14 -1.18 6.12 -26.73 -0.16 -1.35 16 3 C 0.14 1.19 6.51 -4.05 -0.03 1.17 16 4 N -0.38 -4.72 3.68 -61.37 -0.23 -4.95 16 5 C 0.07 0.88 11.36 -17.23 -0.20 0.69 16 6 C -0.22 -3.11 4.95 -105.06 -0.52 -3.63 16 7 C 0.13 1.99 5.45 -4.98 -0.03 1.96 16 8 N -0.53 -10.00 4.65 -236.11 -1.10 -11.10 16 9 C 0.07 1.19 5.27 -3.83 -0.02 1.17 16 10 C -0.12 -2.38 6.09 -26.65 -0.16 -2.55 16 11 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 12 C 0.06 1.40 2.26 -91.70 -0.21 1.20 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 17 N -0.89 -25.58 11.36 55.43 0.63 -24.95 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.07 1.44 4.68 -3.83 -0.02 1.42 16 23 C 0.05 0.74 10.47 -17.37 -0.18 0.56 16 24 N -0.30 -4.36 12.42 30.62 0.38 -3.98 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.61 8.07 -51.93 -0.42 0.20 16 32 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 34 H 0.07 1.06 7.99 -51.93 -0.41 0.65 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 1.03 5.98 -51.93 -0.31 0.72 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.20 8.01 -51.93 -0.42 0.79 16 44 H 0.18 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -30.45 349.15 -9.51 -39.96 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.76 Total: -1.07 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.68 Total: -15.52 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.31 Total: -44.97 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.45 -9.51 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.332 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds