Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47243 * 2 1 4 4 N 1.46492 * 109.47490 * 180.02562 * 3 2 1 5 5 C 1.34946 * 126.04242 * 125.25970 * 4 3 2 6 6 C 1.35311 * 107.74787 * 180.14699 * 5 4 3 7 7 C 1.50703 * 126.03902 * 179.87553 * 6 5 4 8 8 N 1.46898 * 109.47016 * 269.71943 * 7 6 5 9 9 C 1.46852 * 110.99758 * 294.20710 * 8 7 6 10 10 C 1.53044 * 109.52198 * 174.16640 * 9 8 7 11 11 C 1.53112 * 109.28010 * 59.17582 * 10 9 8 12 12 C 1.53116 * 109.16591 * 302.34710 * 11 10 9 13 13 H 1.09004 * 109.53383 * 297.69623 * 12 11 10 14 14 C 1.50694 * 109.50594 * 177.59490 * 12 11 10 15 15 H 1.08000 * 120.00563 * 240.19687 * 14 12 11 16 16 C 1.37885 * 119.99902 * 60.19850 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.46849 * 111.00167 * 170.00047 * 8 7 6 23 23 C 1.39860 * 107.92217 * 359.61393 * 6 5 4 24 24 N 1.30835 * 108.20183 * 0.23849 * 23 6 5 25 25 H 1.08996 * 109.47033 * 299.99650 * 1 2 3 26 26 H 1.08994 * 109.47084 * 60.00124 * 1 2 3 27 27 H 1.09000 * 109.46726 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47017 * 240.00317 * 2 1 3 29 29 H 1.09000 * 109.47524 * 120.00414 * 2 1 3 30 30 H 1.09006 * 109.46855 * 60.00218 * 3 2 1 31 31 H 1.09000 * 109.47199 * 300.00613 * 3 2 1 32 32 H 1.08000 * 126.12222 * 359.97438 * 5 4 3 33 33 H 1.08997 * 109.47310 * 149.71435 * 7 6 5 34 34 H 1.09004 * 109.47247 * 29.71171 * 7 6 5 35 35 H 1.08998 * 109.46190 * 294.17319 * 9 8 7 36 36 H 1.08994 * 109.46462 * 54.14796 * 9 8 7 37 37 H 1.08999 * 109.50002 * 179.12318 * 10 9 8 38 38 H 1.09002 * 109.50074 * 299.23514 * 10 9 8 39 39 H 1.09003 * 109.52299 * 182.44001 * 11 10 9 40 40 H 1.09001 * 109.52333 * 62.25375 * 11 10 9 41 41 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.46434 * 65.81575 * 22 8 7 43 43 H 1.08994 * 109.46147 * 305.85189 * 22 8 7 44 44 H 1.08007 * 125.90199 * 180.26421 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2986 2.0726 -0.8918 6 6 5.5834 1.8247 -0.5475 7 6 6.8075 2.3290 -1.2677 8 7 7.2050 1.3584 -2.2962 9 6 7.6464 0.0972 -1.6870 10 6 7.9130 -0.9352 -2.7849 11 6 8.9904 -0.3995 -3.7318 12 6 8.5269 0.9381 -4.3153 13 1 7.6188 0.7860 -4.8988 14 6 9.6068 1.5012 -5.2028 15 1 10.0468 2.4609 -4.9754 16 6 10.0331 0.7911 -6.3051 17 7 9.4976 -0.3778 -6.5818 18 14 11.3713 1.4895 -7.4056 19 1 10.7523 2.3059 -8.4806 20 1 12.2813 2.3415 -6.5986 21 1 12.1441 0.3760 -8.0125 22 6 8.2425 1.9162 -3.1732 23 6 5.5749 1.0228 0.5983 24 7 4.3295 0.7931 0.9271 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9674 2.6659 -1.7313 33 1 7.6218 2.4568 -0.5545 34 1 6.5834 3.2861 -1.7387 35 1 8.5612 0.2685 -1.1198 36 1 6.8695 -0.2751 -1.0194 37 1 8.2555 -1.8663 -2.3333 38 1 6.9951 -1.1173 -3.3439 39 1 9.1526 -1.1128 -4.5398 40 1 9.9198 -0.2541 -3.1811 41 1 9.7973 -0.8772 -7.3575 42 1 9.1545 2.0790 -2.5989 43 1 7.8985 2.8650 -3.5848 44 1 6.4459 0.6567 1.1217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = 45.793204 kcal Electronic energy + Delta-G solvation = -21595.491379 eV Core-core repulsion = 18547.984625 eV Total energy + Delta-G solvation = -3047.506754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12521 -39.62503 -36.42401 -35.52799 -33.72850 -32.37633 -31.66396 -31.01285 -27.79263 -26.86445 -26.03985 -23.47540 -23.24058 -22.95423 -21.47554 -20.80157 -20.26441 -18.40642 -17.75482 -16.78823 -16.58458 -16.24525 -15.70507 -15.46127 -15.24557 -15.04247 -14.83076 -14.45127 -14.14414 -13.99919 -13.75031 -13.52033 -13.29857 -13.08641 -12.84538 -12.79167 -12.55341 -12.49855 -12.47382 -12.20733 -11.83407 -11.76835 -11.67969 -11.37575 -11.31963 -10.82994 -10.61746 -10.35774 -10.24876 -9.33961 -8.95078 -8.04716 -6.18751 1.02344 1.43278 1.43729 1.53942 1.69752 1.85585 2.45755 3.22193 3.37932 3.56094 3.94412 4.02060 4.10609 4.24227 4.27701 4.31185 4.38764 4.45842 4.49119 4.57810 4.61477 4.68502 4.77067 4.83517 4.83955 4.93581 4.97028 5.06073 5.12919 5.13928 5.18604 5.24373 5.32117 5.36612 5.42889 5.56733 5.66889 5.75378 6.02214 6.17205 6.21350 6.28024 6.46649 6.52990 6.80661 6.94958 7.49057 8.99897 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029346 B = 0.003390 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.918459 B = 8258.394569 C = 8453.671182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.129 3.871 4 N -0.376 5.376 5 C 0.072 3.928 6 C -0.238 4.238 7 C 0.136 3.864 8 N -0.543 5.543 9 C 0.073 3.927 10 C -0.110 4.110 11 C -0.103 4.103 12 C 0.054 3.946 13 H -0.005 1.005 14 C -0.534 4.534 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 0.954 3.046 19 H -0.276 1.276 20 H -0.268 1.268 21 H -0.285 1.285 22 C 0.082 3.918 23 C 0.046 3.954 24 N -0.326 5.326 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.195 0.805 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.023 0.977 41 H 0.259 0.741 42 H 0.015 0.985 43 H 0.061 0.939 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.836 4.110 13.951 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.009 3.991 4 N -0.159 5.159 5 C -0.075 4.075 6 C -0.250 4.250 7 C 0.008 3.992 8 N -0.268 5.268 9 C -0.055 4.055 10 C -0.148 4.148 11 C -0.141 4.141 12 C 0.035 3.965 13 H 0.013 0.987 14 C -0.572 4.572 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.192 1.192 21 H -0.211 1.211 22 C -0.046 4.046 23 C -0.140 4.140 24 N -0.148 5.148 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.212 0.788 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.044 0.956 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.068 0.932 42 H 0.034 0.966 43 H 0.079 0.921 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.195 3.302 14.376 21.905 hybrid contribution 2.188 0.509 -1.024 2.468 sum -14.007 3.811 13.352 19.723 Atomic orbital electron populations 1.21675 0.92620 1.02822 1.03050 1.21727 0.97808 0.95352 1.02073 1.22073 0.72577 0.99111 1.05366 1.48865 1.07238 1.38782 1.20969 1.22708 0.90632 0.98530 0.95649 1.19968 0.94713 1.09650 1.00693 1.20251 0.92835 0.94560 0.91588 1.61963 1.40057 1.04570 1.20213 1.21923 0.97931 0.90248 0.95369 1.21576 0.98667 0.97638 0.96931 1.21452 0.95546 0.99916 0.97179 1.18567 0.94233 0.92029 0.91656 0.98686 1.21550 1.21028 1.04555 1.10100 0.92850 1.25739 0.98771 0.95215 0.98910 1.70053 1.43833 1.13887 1.27885 0.85619 0.79388 0.77969 0.79034 1.20125 1.19239 1.21080 1.21978 0.91064 0.97728 0.93809 1.23994 0.95396 0.97955 0.96671 1.77200 1.01965 1.20430 1.15199 0.91399 0.91272 0.92039 0.92963 0.92397 0.88865 0.86239 0.78845 0.94257 0.89875 0.95611 0.90438 0.91801 0.93769 0.92620 0.95832 0.93177 0.96632 0.92057 0.79463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.13 -2.10 6.12 30.60 0.19 -1.91 16 3 C 0.13 1.94 6.51 86.38 0.56 2.50 16 4 N -0.38 -8.67 3.68 -348.08 -1.28 -9.95 16 5 C 0.07 1.69 11.36 83.54 0.95 2.64 16 6 C -0.24 -6.36 4.95 -20.15 -0.10 -6.46 16 7 C 0.14 3.90 5.45 85.56 0.47 4.37 16 8 N -0.54 -19.71 4.65 -900.91 -4.19 -23.90 16 9 C 0.07 2.58 5.27 86.33 0.45 3.04 16 10 C -0.11 -4.48 6.09 30.65 0.19 -4.29 16 11 C -0.10 -5.07 5.03 30.67 0.15 -4.91 16 12 C 0.05 2.79 2.26 -11.49 -0.03 2.76 16 13 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 14 C -0.53 -29.83 8.56 25.60 0.22 -29.61 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.01 0.68 5.31 84.66 0.45 1.13 16 17 N -0.92 -54.07 11.36 21.45 0.24 -53.83 16 18 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 22 C 0.08 3.46 4.68 86.33 0.40 3.86 16 23 C 0.05 1.21 10.47 85.23 0.89 2.10 16 24 N -0.33 -8.98 12.42 -57.03 -0.71 -9.68 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.17 16 31 H 0.12 1.19 8.07 -2.39 -0.02 1.17 16 32 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 34 H 0.08 2.22 7.99 -2.38 -0.02 2.20 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 2.51 5.98 -2.39 -0.01 2.49 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 3.11 6.16 -2.39 -0.01 3.09 16 40 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 2.52 8.01 -2.39 -0.02 2.50 16 44 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -66.24 349.15 2.55 -63.69 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.94 Total: 13.19 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 5.51 Total: -25.59 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -5.93 Total: -97.36 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -66.24 2.55 -63.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.480 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds