Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46496 * 109.47487 * 179.97438 * 3 2 1 5 5 C 1.34958 * 126.03739 * 125.00130 * 4 3 2 6 6 C 1.35313 * 107.74600 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.04006 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47278 * 90.00146 * 7 6 5 9 9 C 1.46845 * 110.99949 * 45.78902 * 8 7 6 10 10 C 1.53040 * 109.52380 * 185.84329 * 9 8 7 11 11 C 1.53125 * 109.27524 * 300.82231 * 10 9 8 12 12 C 1.53115 * 109.16268 * 57.65203 * 11 10 9 13 13 H 1.09008 * 109.49785 * 62.28646 * 12 11 10 14 14 C 1.50701 * 109.50416 * 182.40319 * 12 11 10 15 15 H 1.08000 * 119.99901 * 119.80812 * 14 12 11 16 16 C 1.37876 * 119.99860 * 299.80721 * 14 12 11 17 17 N 1.31517 * 119.99973 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 120.00464 * 359.97438 * 16 14 12 19 19 H 1.48505 * 109.46852 * 90.00092 * 18 16 14 20 20 H 1.48498 * 109.47507 * 210.00122 * 18 16 14 21 21 H 1.48504 * 109.47074 * 330.00482 * 18 16 14 22 22 C 1.46848 * 111.00380 * 170.00370 * 8 7 6 23 23 C 1.39873 * 107.91852 * 359.97438 * 6 5 4 24 24 N 1.30830 * 108.20486 * 359.73994 * 23 6 5 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.07999 * 126.12129 * 359.96048 * 5 4 3 33 33 H 1.09004 * 109.47397 * 210.00253 * 7 6 5 34 34 H 1.09002 * 109.46982 * 330.00204 * 7 6 5 35 35 H 1.09002 * 109.46290 * 305.85695 * 9 8 7 36 36 H 1.08993 * 109.46245 * 65.82917 * 9 8 7 37 37 H 1.09000 * 109.50452 * 180.88573 * 10 9 8 38 38 H 1.09002 * 109.50489 * 60.76045 * 10 9 8 39 39 H 1.09000 * 109.52154 * 297.74554 * 11 10 9 40 40 H 1.09001 * 109.56964 * 177.59253 * 11 10 9 41 41 H 0.96995 * 120.00104 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.45697 * 294.17585 * 22 8 7 43 43 H 1.09002 * 109.46284 * 54.14127 * 22 8 7 44 44 H 1.08005 * 125.89468 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2993 2.0684 -0.8931 6 6 5.5839 1.8253 -0.5443 7 6 6.8085 2.3299 -1.2632 8 7 7.2054 3.6283 -0.7024 9 6 7.1876 3.5950 0.7656 10 6 7.4630 4.9976 1.3123 11 6 8.8280 5.4768 0.8104 12 6 8.8362 5.4560 -0.7206 13 1 8.0824 6.1472 -1.0979 14 6 10.1956 5.8700 -1.2222 15 1 10.7772 5.1913 -1.8284 16 6 10.6969 7.1151 -0.9071 17 7 11.8831 7.4766 -1.3452 18 14 9.6908 8.2893 0.1410 19 1 10.0111 8.0716 1.5746 20 1 10.0168 9.6892 -0.2320 21 1 8.2445 8.0404 -0.0864 22 6 8.5209 4.0402 -1.2084 23 6 5.5744 1.0240 0.6021 24 7 4.3288 0.7988 0.9330 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9688 2.6574 -1.7358 33 1 7.6229 1.6161 -1.1387 34 1 6.5854 2.4452 -2.3239 35 1 6.2102 3.2567 1.1094 36 1 7.9556 2.9089 1.1226 37 1 7.4654 4.9695 2.4020 38 1 6.6877 5.6816 0.9670 39 1 9.6077 4.8152 1.1879 40 1 9.0104 6.4923 1.1620 41 1 12.2359 8.3524 -1.1232 42 1 9.2826 3.3518 -0.8421 43 1 8.5119 4.0252 -2.2983 44 1 6.4450 0.6578 1.1260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = 52.002753 kcal Electronic energy + Delta-G solvation = -21674.128380 eV Core-core repulsion = 18626.890893 eV Total energy + Delta-G solvation = -3047.237487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21343 -39.79451 -36.48286 -35.54782 -34.02485 -32.40642 -31.93586 -31.20689 -27.89820 -26.79559 -26.23359 -23.69406 -23.20033 -22.85988 -21.52363 -20.78479 -20.35903 -18.79915 -17.79981 -17.22601 -16.49324 -16.13322 -15.85855 -15.47591 -15.28876 -15.17436 -15.03537 -14.76435 -14.29647 -14.07281 -13.85747 -13.68704 -13.47246 -13.03563 -12.94989 -12.79925 -12.71456 -12.59130 -12.33201 -12.11706 -11.86914 -11.78012 -11.71259 -11.40776 -11.37234 -10.97170 -10.77322 -10.58811 -10.28288 -9.40910 -8.96349 -8.28048 -6.30807 1.00646 1.31535 1.37349 1.48800 1.67152 1.81154 2.34768 3.07959 3.29454 3.54620 3.93986 4.01522 4.07152 4.08327 4.14948 4.23470 4.30473 4.41245 4.47131 4.48712 4.55893 4.60155 4.71742 4.77424 4.80563 4.85848 4.87188 4.95935 4.98977 5.11413 5.12153 5.18011 5.20043 5.25706 5.33187 5.36919 5.48771 5.66806 5.71465 5.76929 6.18745 6.24246 6.37173 6.41603 6.76971 6.78169 7.34837 8.88792 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038538 B = 0.003434 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.375812 B = 8151.828896 C = 8353.802671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.127 3.873 4 N -0.375 5.375 5 C 0.077 3.923 6 C -0.244 4.244 7 C 0.136 3.864 8 N -0.541 5.541 9 C 0.072 3.928 10 C -0.114 4.114 11 C -0.121 4.121 12 C 0.021 3.979 13 H 0.025 0.975 14 C -0.516 4.516 15 H 0.035 0.965 16 C 0.013 3.987 17 N -0.951 5.951 18 Si 0.950 3.050 19 H -0.270 1.270 20 H -0.300 1.300 21 H -0.248 1.248 22 C 0.088 3.912 23 C 0.047 3.953 24 N -0.325 5.325 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.199 0.801 33 H 0.036 0.964 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.016 0.984 43 H 0.063 0.937 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.559 -13.626 3.235 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.007 3.993 4 N -0.157 5.157 5 C -0.071 4.071 6 C -0.256 4.256 7 C 0.008 3.992 8 N -0.265 5.265 9 C -0.056 4.056 10 C -0.152 4.152 11 C -0.159 4.159 12 C 0.002 3.998 13 H 0.043 0.957 14 C -0.555 4.555 15 H 0.053 0.947 16 C -0.184 4.184 17 N -0.592 5.592 18 Si 0.778 3.222 19 H -0.196 1.196 20 H -0.228 1.228 21 H -0.172 1.172 22 C -0.040 4.040 23 C -0.139 4.139 24 N -0.146 5.146 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.105 0.895 32 H 0.215 0.785 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.082 0.918 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -24.749 -13.742 3.902 28.576 hybrid contribution 1.744 0.584 0.016 1.839 sum -23.005 -13.158 3.918 26.790 Atomic orbital electron populations 1.21686 0.92845 1.02840 1.02958 1.21712 0.97605 0.95065 1.02308 1.22090 0.72539 0.99328 1.05322 1.48878 1.07242 1.39174 1.20450 1.22740 0.90385 0.97486 0.96460 1.19932 0.94732 1.09060 1.01891 1.20297 0.92654 0.88052 0.98221 1.62095 1.27988 1.28803 1.07653 1.21956 1.00459 0.95639 0.87567 1.21631 0.96509 0.97168 0.99906 1.21918 0.97006 0.98878 0.98064 1.19063 0.94252 0.94259 0.92265 0.95659 1.21353 1.02104 1.00357 1.31643 0.94684 1.25824 0.95699 0.99767 0.97113 1.70046 1.19323 1.21694 1.48094 0.85813 0.80686 0.76784 0.78954 1.19586 1.22773 1.17184 1.21786 0.87650 0.95631 0.98890 1.23984 0.95370 0.98168 0.96409 1.77233 1.01925 1.20777 1.14713 0.91882 0.91875 0.91143 0.92546 0.92166 0.85949 0.89537 0.78463 0.94585 0.89594 0.89991 0.95635 0.90714 0.92174 0.93386 0.94879 0.92633 0.96544 0.91805 0.79787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 71.98 0.71 -0.42 16 2 C -0.13 -1.59 6.13 30.59 0.19 -1.41 16 3 C 0.13 1.62 6.51 86.38 0.56 2.18 16 4 N -0.38 -7.62 3.68 -348.06 -1.28 -8.90 16 5 C 0.08 1.55 11.36 83.54 0.95 2.50 16 6 C -0.24 -5.85 4.20 -20.14 -0.08 -5.93 16 7 C 0.14 3.61 5.76 85.56 0.49 4.10 16 8 N -0.54 -17.80 4.80 -900.95 -4.32 -22.13 16 9 C 0.07 2.25 4.76 86.33 0.41 2.66 16 10 C -0.11 -3.93 6.09 30.65 0.19 -3.74 16 11 C -0.12 -5.20 4.74 30.67 0.15 -5.06 16 12 C 0.02 0.98 1.85 -11.49 -0.02 0.96 16 13 H 0.03 1.25 7.19 -2.38 -0.02 1.23 16 14 C -0.52 -29.82 9.14 25.60 0.23 -29.59 16 15 H 0.03 2.22 7.99 -2.91 -0.02 2.19 16 16 C 0.01 0.75 5.45 84.65 0.46 1.21 16 17 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 18 Si 0.95 46.32 24.36 68.60 1.67 47.99 16 19 H -0.27 -12.58 6.89 99.48 0.69 -11.89 16 20 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 21 H -0.25 -11.36 6.53 99.48 0.65 -10.71 16 22 C 0.09 3.54 4.65 86.32 0.40 3.94 16 23 C 0.05 1.14 10.37 85.24 0.88 2.02 16 24 N -0.32 -8.20 12.42 -57.02 -0.71 -8.91 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.12 0.87 8.07 -2.39 -0.02 0.86 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.04 0.97 8.08 -2.38 -0.02 0.95 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.39 5.66 -2.39 -0.01 2.38 16 36 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.03 1.49 3.37 -2.39 -0.01 1.48 16 41 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.06 2.56 8.12 -2.39 -0.02 2.54 16 44 H 0.19 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -69.77 341.28 2.05 -67.72 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.87 Total: 10.84 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 5.52 Total: -26.56 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -6.01 Total: -99.98 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.67 Total: 47.99 kcal Total: -69.77 2.05 -67.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.720 kcal (2) G-P(sol) polarization free energy of solvation -69.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds