Wall clock time and date at job start Mon Mar 30 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47298 * 2 1 4 4 N 1.46500 * 109.47237 * 120.00209 * 2 1 3 5 5 C 1.34946 * 126.03644 * 274.94742 * 4 2 1 6 6 C 1.35316 * 107.74870 * 180.02562 * 5 4 2 7 7 C 1.50703 * 126.04135 * 180.26489 * 6 5 4 8 8 N 1.46902 * 109.46870 * 269.71348 * 7 6 5 9 9 C 1.46840 * 111.00044 * 294.21061 * 8 7 6 10 10 C 1.53039 * 109.52304 * 174.16225 * 9 8 7 11 11 C 1.53124 * 109.27997 * 59.17859 * 10 9 8 12 12 C 1.53116 * 109.15620 * 302.34624 * 11 10 9 13 13 H 1.08997 * 109.54074 * 297.68947 * 12 11 10 14 14 C 1.50700 * 109.50048 * 177.59134 * 12 11 10 15 15 H 1.07999 * 120.00544 * 240.19562 * 14 12 11 16 16 C 1.37876 * 119.99832 * 60.19865 * 14 12 11 17 17 N 1.31513 * 120.00081 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00260 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47094 * 59.99857 * 18 16 14 20 20 H 1.48494 * 109.47339 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46895 * 300.00118 * 18 16 14 22 22 C 1.46852 * 110.99833 * 169.99915 * 8 7 6 23 23 C 1.39875 * 107.91722 * 0.02562 * 6 5 4 24 24 N 1.30829 * 108.20298 * 0.02562 * 23 6 5 25 25 H 1.09003 * 109.46877 * 299.99669 * 1 2 3 26 26 H 1.08997 * 109.47000 * 59.99836 * 1 2 3 27 27 H 1.09001 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47122 * 239.99876 * 2 1 3 29 29 H 1.08998 * 109.47168 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47229 * 300.00024 * 3 2 1 31 31 H 1.09000 * 109.47136 * 59.99884 * 3 2 1 32 32 H 1.07999 * 126.12479 * 0.04451 * 5 4 2 33 33 H 1.08997 * 109.46890 * 29.71550 * 7 6 5 34 34 H 1.08999 * 109.46780 * 149.71741 * 7 6 5 35 35 H 1.09003 * 109.46549 * 294.17252 * 9 8 7 36 36 H 1.08997 * 109.46945 * 54.14709 * 9 8 7 37 37 H 1.08999 * 109.50227 * 299.23944 * 10 9 8 38 38 H 1.08999 * 109.50418 * 179.11453 * 10 9 8 39 39 H 1.08996 * 109.52226 * 182.44191 * 11 10 9 40 40 H 1.09005 * 109.57176 * 62.28024 * 11 10 9 41 41 H 0.97006 * 120.00324 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.46045 * 305.85730 * 22 8 7 43 43 H 1.08998 * 109.45897 * 65.82239 * 22 8 7 44 44 H 1.08004 * 125.89587 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1943 -0.1391 2.4151 6 6 2.6576 -1.1049 3.2419 7 6 2.9892 -0.9378 4.7025 8 7 4.3996 -0.5520 4.8433 9 6 5.2879 -1.6337 4.3995 10 6 6.7384 -1.1463 4.4227 11 6 7.1033 -0.7122 5.8450 12 6 6.1330 0.3810 6.3012 13 1 6.2338 1.2515 5.6530 14 6 6.4481 0.7724 7.7219 15 1 5.7012 0.6541 8.4930 16 6 7.6899 1.2817 8.0374 17 7 8.5992 1.4264 7.0984 18 14 8.0803 1.7677 9.7984 19 1 7.9444 0.5812 10.6810 20 1 9.4706 2.2839 9.8728 21 1 7.1359 2.8247 10.2411 22 6 4.7001 -0.1507 6.2236 23 6 2.7692 -2.2871 2.5026 24 7 2.3872 -2.0397 1.2761 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.9997 0.8889 2.6829 33 1 2.3556 -0.1621 5.1324 34 1 2.8161 -1.8790 5.2243 35 1 5.1814 -2.4884 5.0676 36 1 5.0207 -1.9302 3.3852 37 1 6.8489 -0.3003 3.7444 38 1 7.3990 -1.9543 4.1082 39 1 8.1216 -0.3237 5.8574 40 1 7.0312 -1.5670 6.5175 41 1 9.4730 1.7844 7.3204 42 1 4.0057 0.6299 6.5342 43 1 4.5962 -1.0123 6.8831 44 1 3.1117 -3.2396 2.8794 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:20 Heat of formation + Delta-G solvation = 67.032565 kcal Electronic energy + Delta-G solvation = -21847.003280 eV Core-core repulsion = 18800.417534 eV Total energy + Delta-G solvation = -3046.585746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18292 -38.03268 -35.92094 -33.80563 -31.95420 -30.20672 -30.06006 -29.40167 -27.62743 -25.48567 -24.87540 -22.95325 -21.81751 -21.17217 -20.21381 -19.72782 -18.47490 -16.79517 -16.25522 -15.47111 -14.97186 -14.80646 -14.48889 -14.27810 -13.97007 -13.71513 -13.12986 -13.07523 -12.79377 -12.66470 -12.54957 -12.35754 -12.23690 -11.86653 -11.66720 -11.64731 -11.34904 -11.19023 -10.89227 -10.69536 -10.60392 -10.31278 -10.02692 -9.76123 -9.39750 -9.27736 -8.97645 -8.63770 -8.26117 -8.22439 -7.49026 -5.92292 -3.98433 2.03278 2.51566 2.94619 3.35134 3.39809 3.42218 4.28165 4.46605 4.60146 4.76745 4.83399 4.88922 5.02254 5.16376 5.25679 5.36952 5.37531 5.48809 5.56042 5.61570 5.73533 5.80988 5.86773 5.94024 5.96721 6.05235 6.22443 6.37886 6.39179 6.51882 6.61082 6.78519 6.83652 6.85302 7.06143 7.15307 7.31154 7.49165 7.78942 7.82257 7.85201 7.95311 8.15991 8.24641 8.54735 9.05830 9.65488 11.13549 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030806 B = 0.003577 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.697876 B = 7825.179625 C = 8019.466716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 C -0.166 4.166 4 N -0.372 5.372 5 C 0.071 3.929 6 C -0.219 4.219 7 C 0.130 3.870 8 N -0.534 5.534 9 C 0.065 3.935 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.033 0.967 14 C -0.515 4.515 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.068 3.932 23 C 0.052 3.948 24 N -0.305 5.305 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.169 0.831 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.020 0.980 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.259 0.741 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.070 -2.912 -12.870 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 C -0.224 4.224 4 N -0.155 5.155 5 C -0.075 4.075 6 C -0.230 4.230 7 C 0.001 3.999 8 N -0.259 5.259 9 C -0.063 4.063 10 C -0.155 4.155 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.051 0.949 14 C -0.553 4.553 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.059 4.059 23 C -0.134 4.134 24 N -0.126 5.126 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.186 0.814 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.031 -2.852 -14.490 20.371 hybrid contribution 0.309 -0.108 2.317 2.340 sum -13.722 -2.960 -12.173 18.581 Atomic orbital electron populations 1.22236 0.93944 1.03083 1.02931 1.21180 0.94502 0.92822 0.85986 1.22201 1.02709 0.93948 1.03510 1.48696 1.51176 1.07367 1.08294 1.22174 1.00774 0.99401 0.85121 1.20009 1.12007 0.93053 0.97966 1.20274 0.90707 0.99002 0.89899 1.62019 1.01417 1.37838 1.24623 1.22006 0.93995 0.91668 0.98619 1.21664 0.93701 0.99569 1.00520 1.21641 1.03864 0.97925 0.91358 1.18642 0.87534 0.94096 0.96023 0.94882 1.21136 0.98392 1.41874 0.93934 0.92922 1.24934 0.96405 0.95625 0.96878 1.69890 1.05161 1.45599 1.32102 0.86705 0.77263 0.78838 0.85428 1.20404 1.21376 1.20336 1.22303 1.00684 0.97774 0.85169 1.23732 0.99493 0.99320 0.90848 1.77264 1.21397 0.93521 1.20371 0.91878 0.90696 0.91789 0.88332 0.91215 0.90222 0.91368 0.81354 0.90868 0.94953 0.96213 0.92169 0.92370 0.93804 0.89307 0.95233 0.93069 0.92400 0.96411 0.80695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.52 37.16 0.35 -0.84 16 2 C 0.16 1.42 3.93 -67.93 -0.27 1.15 16 3 C -0.17 -1.23 8.83 37.16 0.33 -0.91 16 4 N -0.37 -4.69 3.53 -54.87 -0.19 -4.89 16 5 C 0.07 0.93 10.50 -17.22 -0.18 0.75 16 6 C -0.22 -3.16 4.95 -105.05 -0.52 -3.68 16 7 C 0.13 2.01 5.45 -4.97 -0.03 1.98 16 8 N -0.53 -10.03 4.65 -236.12 -1.10 -11.12 16 9 C 0.07 1.20 5.27 -3.84 -0.02 1.18 16 10 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 11 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 12 C 0.06 1.41 2.26 -91.69 -0.21 1.21 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.59 11.36 55.43 0.63 -24.96 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.07 1.44 4.68 -3.83 -0.02 1.43 16 23 C 0.05 0.74 10.47 -17.37 -0.18 0.56 16 24 N -0.30 -4.48 12.58 30.63 0.39 -4.10 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.49 7.16 -51.93 -0.37 0.12 16 32 H 0.17 1.85 7.26 -52.49 -0.38 1.47 16 33 H 0.07 1.06 7.99 -51.93 -0.41 0.65 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 1.03 5.98 -51.93 -0.31 0.72 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 42 H 0.06 1.21 8.02 -51.93 -0.42 0.79 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.18 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -30.43 346.33 -9.18 -39.61 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.67 Total: -0.75 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.43 Total: -15.35 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.28 Total: -45.07 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.43 -9.18 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.643 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds