Wall clock time and date at job start Mon Mar 30 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47298 * 2 1 4 4 N 1.46500 * 109.47237 * 120.00209 * 2 1 3 5 5 C 1.34946 * 126.03644 * 274.94742 * 4 2 1 6 6 C 1.35316 * 107.74870 * 180.02562 * 5 4 2 7 7 C 1.50703 * 126.04135 * 180.26489 * 6 5 4 8 8 N 1.46902 * 109.46870 * 269.71348 * 7 6 5 9 9 C 1.46840 * 111.00044 * 294.21061 * 8 7 6 10 10 C 1.53039 * 109.52304 * 174.16225 * 9 8 7 11 11 C 1.53124 * 109.27997 * 59.17859 * 10 9 8 12 12 C 1.53116 * 109.15620 * 302.34624 * 11 10 9 13 13 H 1.08997 * 109.54074 * 297.68947 * 12 11 10 14 14 C 1.50700 * 109.50048 * 177.59134 * 12 11 10 15 15 H 1.07999 * 120.00544 * 240.19562 * 14 12 11 16 16 C 1.37876 * 119.99832 * 60.19865 * 14 12 11 17 17 N 1.31513 * 120.00081 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00260 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47094 * 59.99857 * 18 16 14 20 20 H 1.48494 * 109.47339 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46895 * 300.00118 * 18 16 14 22 22 C 1.46852 * 110.99833 * 169.99915 * 8 7 6 23 23 C 1.39875 * 107.91722 * 0.02562 * 6 5 4 24 24 N 1.30829 * 108.20298 * 0.02562 * 23 6 5 25 25 H 1.09003 * 109.46877 * 299.99669 * 1 2 3 26 26 H 1.08997 * 109.47000 * 59.99836 * 1 2 3 27 27 H 1.09001 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47122 * 239.99876 * 2 1 3 29 29 H 1.08998 * 109.47168 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47229 * 300.00024 * 3 2 1 31 31 H 1.09000 * 109.47136 * 59.99884 * 3 2 1 32 32 H 1.07999 * 126.12479 * 0.04451 * 5 4 2 33 33 H 1.08997 * 109.46890 * 29.71550 * 7 6 5 34 34 H 1.08999 * 109.46780 * 149.71741 * 7 6 5 35 35 H 1.09003 * 109.46549 * 294.17252 * 9 8 7 36 36 H 1.08997 * 109.46945 * 54.14709 * 9 8 7 37 37 H 1.08999 * 109.50227 * 299.23944 * 10 9 8 38 38 H 1.08999 * 109.50418 * 179.11453 * 10 9 8 39 39 H 1.08996 * 109.52226 * 182.44191 * 11 10 9 40 40 H 1.09005 * 109.57176 * 62.28024 * 11 10 9 41 41 H 0.97006 * 120.00324 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.46045 * 305.85730 * 22 8 7 43 43 H 1.08998 * 109.45897 * 65.82239 * 22 8 7 44 44 H 1.08004 * 125.89587 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1943 -0.1391 2.4151 6 6 2.6576 -1.1049 3.2419 7 6 2.9892 -0.9378 4.7025 8 7 4.3996 -0.5520 4.8433 9 6 5.2879 -1.6337 4.3995 10 6 6.7384 -1.1463 4.4227 11 6 7.1033 -0.7122 5.8450 12 6 6.1330 0.3810 6.3012 13 1 6.2338 1.2515 5.6530 14 6 6.4481 0.7724 7.7219 15 1 5.7012 0.6541 8.4930 16 6 7.6899 1.2817 8.0374 17 7 8.5992 1.4264 7.0984 18 14 8.0803 1.7677 9.7984 19 1 7.9444 0.5812 10.6810 20 1 9.4706 2.2839 9.8728 21 1 7.1359 2.8247 10.2411 22 6 4.7001 -0.1507 6.2236 23 6 2.7692 -2.2871 2.5026 24 7 2.3872 -2.0397 1.2761 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.9997 0.8889 2.6829 33 1 2.3556 -0.1621 5.1324 34 1 2.8161 -1.8790 5.2243 35 1 5.1814 -2.4884 5.0676 36 1 5.0207 -1.9302 3.3852 37 1 6.8489 -0.3003 3.7444 38 1 7.3990 -1.9543 4.1082 39 1 8.1216 -0.3237 5.8574 40 1 7.0312 -1.5670 6.5175 41 1 9.4730 1.7844 7.3204 42 1 4.0057 0.6299 6.5342 43 1 4.5962 -1.0123 6.8831 44 1 3.1117 -3.2396 2.8794 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:19 Heat of formation + Delta-G solvation = 49.226367 kcal Electronic energy + Delta-G solvation = -21847.775415 eV Core-core repulsion = 18800.417534 eV Total energy + Delta-G solvation = -3047.357881 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.19410 -39.63863 -36.76690 -35.55294 -33.70479 -31.72094 -31.22076 -30.78656 -28.21978 -26.87381 -26.75539 -24.05978 -23.43186 -22.72465 -21.18911 -20.76536 -20.25089 -18.40598 -17.63047 -16.78439 -16.44896 -15.99166 -15.78062 -15.59393 -15.09694 -14.94347 -14.84892 -14.38457 -14.16719 -13.90711 -13.70677 -13.41345 -13.26333 -13.09059 -13.05399 -12.80405 -12.58081 -12.52482 -12.49045 -12.31975 -12.03253 -11.79738 -11.68812 -11.42997 -11.33331 -10.83057 -10.62391 -10.35279 -10.25261 -9.34630 -8.95223 -8.04357 -6.18621 1.02726 1.43797 1.45200 1.52675 1.64894 1.85184 2.46020 3.22410 3.37639 3.54236 3.94706 3.97609 4.10275 4.12623 4.25374 4.29804 4.36780 4.46460 4.54632 4.65336 4.66320 4.71579 4.79718 4.81705 4.82984 4.89399 4.94965 4.98129 5.06028 5.13366 5.18628 5.23650 5.24372 5.33854 5.43125 5.56750 5.66833 5.75542 6.02335 6.17433 6.22710 6.28171 6.46500 6.53000 6.81921 6.94869 7.49184 9.00038 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030806 B = 0.003577 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.697876 B = 7825.179625 C = 8019.466716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 C -0.160 4.160 4 N -0.369 5.369 5 C 0.075 3.925 6 C -0.239 4.239 7 C 0.136 3.864 8 N -0.543 5.543 9 C 0.073 3.927 10 C -0.110 4.110 11 C -0.102 4.102 12 C 0.054 3.946 13 H -0.005 1.005 14 C -0.536 4.536 15 H 0.053 0.947 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.954 3.046 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.270 1.270 22 C 0.082 3.918 23 C 0.046 3.954 24 N -0.331 5.331 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.188 0.812 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.023 0.977 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 -2.894 -13.254 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 C -0.218 4.218 4 N -0.152 5.152 5 C -0.072 4.072 6 C -0.250 4.250 7 C 0.008 3.992 8 N -0.268 5.268 9 C -0.055 4.055 10 C -0.148 4.148 11 C -0.141 4.141 12 C 0.035 3.965 13 H 0.013 0.987 14 C -0.574 4.574 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.780 3.220 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.195 1.195 22 C -0.046 4.046 23 C -0.139 4.139 24 N -0.152 5.152 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.205 0.795 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.584 -2.843 -14.897 21.745 hybrid contribution 0.757 -0.075 2.349 2.469 sum -14.827 -2.918 -12.548 19.642 Atomic orbital electron populations 1.22186 0.92364 1.02575 1.04267 1.21544 0.95726 0.93354 0.84726 1.22193 1.01542 0.93051 1.05035 1.49042 1.50229 1.06823 1.09105 1.22501 0.99589 1.00019 0.85129 1.19968 1.13719 0.93748 0.97607 1.20249 0.88405 0.99587 0.90969 1.61960 1.03553 1.38622 1.22646 1.21923 0.92311 0.91514 0.99734 1.21575 0.95957 0.99736 0.97523 1.21451 1.01784 0.97121 0.93703 1.18566 0.90503 0.93166 0.94257 0.98670 1.21528 0.98675 1.42088 0.95129 0.92836 1.25735 0.96306 0.95626 1.00912 1.70044 1.05394 1.46160 1.34040 0.85678 0.77074 0.78722 0.80557 1.19696 1.21124 1.19525 1.21979 0.98066 0.97625 0.86906 1.23977 0.99349 0.99908 0.90704 1.77218 1.22282 0.94893 1.20785 0.91846 0.88036 0.93172 0.88326 0.92944 0.87574 0.91002 0.79483 0.89983 0.94220 0.95604 0.90431 0.93752 0.91783 0.92622 0.95852 0.93163 0.92097 0.96617 0.79422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.52 71.98 0.69 -1.23 16 2 C 0.15 2.37 3.93 44.99 0.18 2.55 16 3 C -0.16 -2.03 8.83 71.98 0.64 -1.40 16 4 N -0.37 -8.74 3.53 -327.50 -1.15 -9.89 16 5 C 0.08 1.83 10.50 83.54 0.88 2.70 16 6 C -0.24 -6.49 4.95 -20.14 -0.10 -6.59 16 7 C 0.14 3.96 5.45 85.56 0.47 4.43 16 8 N -0.54 -19.82 4.65 -900.93 -4.19 -24.01 16 9 C 0.07 2.59 5.27 86.33 0.45 3.04 16 10 C -0.11 -4.48 6.09 30.65 0.19 -4.29 16 11 C -0.10 -5.06 5.03 30.67 0.15 -4.90 16 12 C 0.05 2.79 2.26 -11.49 -0.03 2.76 16 13 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 14 C -0.54 -29.99 8.56 25.60 0.22 -29.77 16 15 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 16 C 0.01 0.72 5.30 84.65 0.45 1.17 16 17 N -0.92 -54.10 11.36 21.45 0.24 -53.86 16 18 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.08 3.47 4.68 86.32 0.40 3.88 16 23 C 0.05 1.24 10.47 85.24 0.89 2.14 16 24 N -0.33 -9.31 12.58 -57.02 -0.72 -10.03 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.87 7.16 -2.39 -0.02 0.85 16 32 H 0.19 3.70 7.26 -2.91 -0.02 3.68 16 33 H 0.08 2.23 7.99 -2.39 -0.02 2.21 16 34 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.08 2.52 5.98 -2.39 -0.01 2.51 16 37 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.06 3.11 6.17 -2.39 -0.01 3.09 16 40 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 42 H 0.06 2.51 8.02 -2.39 -0.02 2.49 16 43 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.19 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -66.16 346.33 2.63 -63.53 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.95 Total: 13.73 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 5.48 Total: -25.52 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -5.82 Total: -97.79 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.16 2.63 -63.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.756 kcal (2) G-P(sol) polarization free energy of solvation -66.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds