Wall clock time and date at job start Mon Mar 30 2020 01:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46900 * 2 1 4 4 N 1.46500 * 109.46991 * 119.99376 * 2 1 3 5 5 C 1.34947 * 126.04040 * 275.00665 * 4 2 1 6 6 C 1.35311 * 107.75028 * 180.02562 * 5 4 2 7 7 C 1.50694 * 126.04430 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47422 * 269.99794 * 7 6 5 9 9 C 1.46847 * 110.99690 * 45.78546 * 8 7 6 10 10 C 1.53033 * 109.52425 * 185.83848 * 9 8 7 11 11 C 1.53117 * 109.27969 * 300.82600 * 10 9 8 12 12 C 1.53120 * 109.16106 * 57.65323 * 11 10 9 13 13 H 1.08995 * 109.50552 * 62.28385 * 12 11 10 14 14 C 1.50705 * 109.50076 * 182.40670 * 12 11 10 15 15 H 1.07998 * 119.99908 * 119.80034 * 14 12 11 16 16 C 1.37874 * 119.99723 * 299.79927 * 14 12 11 17 17 N 1.31513 * 120.00578 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99675 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47319 * 90.00117 * 18 16 14 20 20 H 1.48504 * 109.46637 * 210.00032 * 18 16 14 21 21 H 1.48495 * 109.46854 * 329.99489 * 18 16 14 22 22 C 1.46844 * 110.99988 * 169.99455 * 8 7 6 23 23 C 1.39876 * 107.91749 * 359.97438 * 6 5 4 24 24 N 1.30834 * 108.20073 * 0.27043 * 23 6 5 25 25 H 1.09000 * 109.47307 * 60.00808 * 1 2 3 26 26 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47918 * 300.00592 * 1 2 3 28 28 H 1.08990 * 109.47338 * 239.99749 * 2 1 3 29 29 H 1.08994 * 109.47228 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46742 * 299.99888 * 3 2 1 31 31 H 1.08997 * 109.47319 * 59.99040 * 3 2 1 32 32 H 1.08009 * 126.12504 * 0.02894 * 5 4 2 33 33 H 1.09010 * 109.47174 * 29.99755 * 7 6 5 34 34 H 1.09000 * 109.47328 * 149.99329 * 7 6 5 35 35 H 1.09004 * 109.46723 * 305.86082 * 9 8 7 36 36 H 1.09004 * 109.46493 * 65.82556 * 9 8 7 37 37 H 1.09001 * 109.50435 * 180.88025 * 10 9 8 38 38 H 1.09002 * 109.50026 * 60.76626 * 10 9 8 39 39 H 1.09000 * 109.52062 * 297.74460 * 11 10 9 40 40 H 1.09002 * 109.57216 * 177.58834 * 11 10 9 41 41 H 0.96994 * 120.00671 * 179.97438 * 17 16 14 42 42 H 1.08991 * 109.46892 * 294.17792 * 22 8 7 43 43 H 1.09005 * 109.46133 * 54.15303 * 22 8 7 44 44 H 1.08002 * 125.89548 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1932 -0.1391 2.4155 6 6 2.6569 -1.1047 3.2422 7 6 2.9934 -0.9363 4.7014 8 7 4.4033 -0.5469 4.8371 9 6 4.7496 0.5160 3.8849 10 6 6.2530 0.7938 3.9530 11 6 6.6250 1.2171 5.3767 12 6 6.2100 0.1136 6.3537 13 1 6.7585 -0.8001 6.1251 14 6 6.5188 0.5476 7.7635 15 1 5.7235 0.6312 8.4892 16 6 7.8168 0.8378 8.1266 17 7 8.7855 0.7355 7.2430 18 14 8.1998 1.3751 9.8743 19 1 8.4972 0.1809 10.7054 20 1 9.3779 2.2792 9.8672 21 1 7.0288 2.0924 10.4394 22 6 4.7077 -0.1443 6.2161 23 6 2.7687 -2.2869 2.5031 24 7 2.3914 -2.0384 1.2752 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 1.9979 0.8888 2.6834 33 1 2.3594 -0.1619 5.1335 34 1 2.8244 -1.8776 5.2243 35 1 4.4838 0.2006 2.8759 36 1 4.2009 1.4233 4.1379 37 1 6.5072 1.5935 3.2573 38 1 6.8023 -0.1092 3.6866 39 1 6.1056 2.1415 5.6292 40 1 7.7016 1.3748 5.4412 41 1 9.6986 0.9400 7.4984 42 1 4.1593 0.7659 6.4583 43 1 4.4116 -0.9395 6.9003 44 1 3.1122 -3.2391 2.8796 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:23 Heat of formation + Delta-G solvation = 69.370394 kcal Electronic energy + Delta-G solvation = -21996.483514 eV Core-core repulsion = 18949.999144 eV Total energy + Delta-G solvation = -3046.484370 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28174 -38.04964 -35.96359 -33.85094 -31.92972 -30.34031 -30.05910 -29.29889 -27.67815 -25.65351 -24.83311 -22.83469 -21.79766 -21.43989 -20.03568 -19.88443 -18.46227 -16.79503 -16.26874 -15.54647 -15.04930 -14.79512 -14.51244 -14.21822 -14.05528 -13.71446 -13.15574 -13.09996 -12.95133 -12.68713 -12.48543 -12.42573 -12.24193 -11.92816 -11.69450 -11.62821 -11.40125 -11.14865 -10.91666 -10.66291 -10.58682 -10.43082 -10.05194 -9.76967 -9.39876 -9.30325 -8.96089 -8.63631 -8.31897 -8.21739 -7.46763 -5.92418 -3.98450 1.96004 2.47125 2.93134 3.33885 3.40459 3.43353 4.23256 4.46514 4.55128 4.72054 4.77765 4.85682 5.00257 5.10986 5.22384 5.31359 5.37525 5.41441 5.46136 5.61836 5.70606 5.76444 5.84293 5.91698 5.96019 6.07206 6.21173 6.34146 6.35933 6.50834 6.60130 6.77236 6.82562 6.83245 7.05485 7.09050 7.30072 7.48157 7.79094 7.81250 7.83084 7.94411 8.15845 8.24283 8.54553 9.06009 9.65547 11.13548 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037150 B = 0.003602 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.525017 B = 7770.625726 C = 8024.260252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 C -0.166 4.166 4 N -0.370 5.370 5 C 0.057 3.943 6 C -0.221 4.221 7 C 0.130 3.870 8 N -0.533 5.533 9 C 0.066 3.934 10 C -0.117 4.117 11 C -0.109 4.109 12 C 0.055 3.945 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.068 3.932 23 C 0.065 3.935 24 N -0.305 5.305 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.165 0.835 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.015 0.985 37 H 0.042 0.958 38 H 0.059 0.941 39 H 0.028 0.972 40 H 0.089 0.911 41 H 0.259 0.741 42 H 0.017 0.983 43 H 0.059 0.941 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.965 0.363 -13.740 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 C -0.224 4.224 4 N -0.153 5.153 5 C -0.089 4.089 6 C -0.233 4.233 7 C 0.001 3.999 8 N -0.258 5.258 9 C -0.062 4.062 10 C -0.155 4.155 11 C -0.147 4.147 12 C 0.036 3.964 13 H 0.052 0.948 14 C -0.552 4.552 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.059 4.059 23 C -0.121 4.121 24 N -0.125 5.125 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.713 -0.430 -15.163 21.133 hybrid contribution -0.090 1.456 1.973 2.454 sum -14.803 1.026 -13.190 19.853 Atomic orbital electron populations 1.22234 0.93888 1.03162 1.02909 1.21189 0.94562 0.92758 0.86034 1.22208 1.02646 0.94048 1.03503 1.48704 1.50979 1.07561 1.08104 1.22196 1.01687 0.99364 0.85683 1.20036 1.11927 0.93348 0.97940 1.20359 0.89333 1.00258 0.89919 1.62101 1.17364 1.39789 1.06538 1.22037 0.96925 0.91529 0.95728 1.21673 0.94385 0.99967 0.99486 1.21637 1.03641 0.98123 0.91341 1.18656 0.88420 0.95232 0.94064 0.94768 1.21166 0.92964 1.45425 0.95679 0.92868 1.24935 0.96398 0.95575 0.96962 1.69894 1.00093 1.49284 1.33466 0.86644 0.77796 0.78518 0.85305 1.20725 1.21342 1.20043 1.22308 1.00313 0.97121 0.86158 1.23762 0.98497 0.99481 0.90337 1.77307 1.21502 0.93250 1.20488 0.90667 0.91696 0.91942 0.88193 0.91251 0.90118 0.91532 0.81793 0.95265 0.90442 0.92086 0.96639 0.93977 0.92255 0.95334 0.89286 0.93119 0.96463 0.92276 0.80117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.52 37.16 0.35 -0.81 16 2 C 0.16 1.37 3.93 -67.93 -0.27 1.10 16 3 C -0.17 -1.17 8.83 37.16 0.33 -0.84 16 4 N -0.37 -4.56 3.53 -54.86 -0.19 -4.75 16 5 C 0.06 0.73 8.86 -17.23 -0.15 0.57 16 6 C -0.22 -3.15 4.25 -105.06 -0.45 -3.60 16 7 C 0.13 2.01 5.76 -4.98 -0.03 1.98 16 8 N -0.53 -10.04 4.80 -236.11 -1.13 -11.18 16 9 C 0.07 1.20 4.75 -3.84 -0.02 1.18 16 10 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 11 C -0.11 -2.64 5.03 -26.61 -0.13 -2.77 16 12 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 13 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 14 C -0.51 -14.18 8.56 -34.44 -0.29 -14.48 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -25.62 11.36 55.43 0.63 -24.99 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.07 1.46 4.65 -3.83 -0.02 1.44 16 23 C 0.07 0.93 11.96 -17.36 -0.21 0.72 16 24 N -0.30 -4.43 12.58 30.63 0.39 -4.05 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 31 H 0.07 0.46 7.16 -51.93 -0.37 0.09 16 32 H 0.16 1.76 7.26 -52.48 -0.38 1.38 16 33 H 0.03 0.44 8.08 -51.92 -0.42 0.02 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.05 5.66 -51.93 -0.29 0.76 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 44 H 0.18 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -30.43 345.28 -9.15 -39.58 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.67 Total: -0.94 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.35 Total: -15.23 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.31 Total: -44.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.43 -9.15 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.948 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds