Wall clock time and date at job start Mon Mar 30 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46900 * 2 1 4 4 N 1.46500 * 109.46991 * 119.99376 * 2 1 3 5 5 C 1.34947 * 126.04040 * 275.00665 * 4 2 1 6 6 C 1.35311 * 107.75028 * 180.02562 * 5 4 2 7 7 C 1.50694 * 126.04430 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47422 * 269.99794 * 7 6 5 9 9 C 1.46847 * 110.99690 * 45.78546 * 8 7 6 10 10 C 1.53033 * 109.52425 * 185.83848 * 9 8 7 11 11 C 1.53117 * 109.27969 * 300.82600 * 10 9 8 12 12 C 1.53120 * 109.16106 * 57.65323 * 11 10 9 13 13 H 1.08995 * 109.50552 * 62.28385 * 12 11 10 14 14 C 1.50705 * 109.50076 * 182.40670 * 12 11 10 15 15 H 1.07998 * 119.99908 * 119.80034 * 14 12 11 16 16 C 1.37874 * 119.99723 * 299.79927 * 14 12 11 17 17 N 1.31513 * 120.00578 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99675 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47319 * 90.00117 * 18 16 14 20 20 H 1.48504 * 109.46637 * 210.00032 * 18 16 14 21 21 H 1.48495 * 109.46854 * 329.99489 * 18 16 14 22 22 C 1.46844 * 110.99988 * 169.99455 * 8 7 6 23 23 C 1.39876 * 107.91749 * 359.97438 * 6 5 4 24 24 N 1.30834 * 108.20073 * 0.27043 * 23 6 5 25 25 H 1.09000 * 109.47307 * 60.00808 * 1 2 3 26 26 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47918 * 300.00592 * 1 2 3 28 28 H 1.08990 * 109.47338 * 239.99749 * 2 1 3 29 29 H 1.08994 * 109.47228 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46742 * 299.99888 * 3 2 1 31 31 H 1.08997 * 109.47319 * 59.99040 * 3 2 1 32 32 H 1.08009 * 126.12504 * 0.02894 * 5 4 2 33 33 H 1.09010 * 109.47174 * 29.99755 * 7 6 5 34 34 H 1.09000 * 109.47328 * 149.99329 * 7 6 5 35 35 H 1.09004 * 109.46723 * 305.86082 * 9 8 7 36 36 H 1.09004 * 109.46493 * 65.82556 * 9 8 7 37 37 H 1.09001 * 109.50435 * 180.88025 * 10 9 8 38 38 H 1.09002 * 109.50026 * 60.76626 * 10 9 8 39 39 H 1.09000 * 109.52062 * 297.74460 * 11 10 9 40 40 H 1.09002 * 109.57216 * 177.58834 * 11 10 9 41 41 H 0.96994 * 120.00671 * 179.97438 * 17 16 14 42 42 H 1.08991 * 109.46892 * 294.17792 * 22 8 7 43 43 H 1.09005 * 109.46133 * 54.15303 * 22 8 7 44 44 H 1.08002 * 125.89548 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1932 -0.1391 2.4155 6 6 2.6569 -1.1047 3.2422 7 6 2.9934 -0.9363 4.7014 8 7 4.4033 -0.5469 4.8371 9 6 4.7496 0.5160 3.8849 10 6 6.2530 0.7938 3.9530 11 6 6.6250 1.2171 5.3767 12 6 6.2100 0.1136 6.3537 13 1 6.7585 -0.8001 6.1251 14 6 6.5188 0.5476 7.7635 15 1 5.7235 0.6312 8.4892 16 6 7.8168 0.8378 8.1266 17 7 8.7855 0.7355 7.2430 18 14 8.1998 1.3751 9.8743 19 1 8.4972 0.1809 10.7054 20 1 9.3779 2.2792 9.8672 21 1 7.0288 2.0924 10.4394 22 6 4.7077 -0.1443 6.2161 23 6 2.7687 -2.2869 2.5031 24 7 2.3914 -2.0384 1.2752 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 1.9979 0.8888 2.6834 33 1 2.3594 -0.1619 5.1335 34 1 2.8244 -1.8776 5.2243 35 1 4.4838 0.2006 2.8759 36 1 4.2009 1.4233 4.1379 37 1 6.5072 1.5935 3.2573 38 1 6.8023 -0.1092 3.6866 39 1 6.1056 2.1415 5.6292 40 1 7.7016 1.3748 5.4412 41 1 9.6986 0.9400 7.4984 42 1 4.1593 0.7659 6.4583 43 1 4.4116 -0.9395 6.9003 44 1 3.1122 -3.2391 2.8796 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:22 Heat of formation + Delta-G solvation = 51.332620 kcal Electronic energy + Delta-G solvation = -21997.265691 eV Core-core repulsion = 18949.999144 eV Total energy + Delta-G solvation = -3047.266547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.28622 -39.64263 -36.78263 -35.59109 -33.69758 -31.83779 -31.11698 -30.76764 -28.23307 -26.96193 -26.78921 -23.90847 -23.30548 -23.03866 -21.10684 -20.87845 -20.19707 -18.41336 -17.61777 -16.83531 -16.49337 -16.00218 -15.79591 -15.43551 -15.30341 -14.90723 -14.84563 -14.39694 -14.20975 -13.89108 -13.71522 -13.45448 -13.28825 -13.10612 -13.05362 -12.83990 -12.65201 -12.51658 -12.34885 -12.31523 -12.04517 -11.82928 -11.70153 -11.51684 -11.30865 -10.82707 -10.62076 -10.36600 -10.26534 -9.39133 -8.90326 -8.04760 -6.18958 0.97365 1.43471 1.43812 1.54052 1.62598 1.84211 2.45733 3.22156 3.35944 3.53757 3.92293 3.93976 4.08087 4.11695 4.20302 4.27249 4.35205 4.44194 4.52345 4.63615 4.66113 4.73279 4.79099 4.79929 4.83186 4.91168 4.93512 4.97575 5.04785 5.11006 5.17632 5.22383 5.23518 5.31067 5.42660 5.56070 5.66700 5.73731 6.01940 6.17986 6.19009 6.27675 6.46270 6.52863 6.80373 6.94665 7.48923 8.99964 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037150 B = 0.003602 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.525017 B = 7770.625726 C = 8024.260252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 C -0.161 4.161 4 N -0.366 5.366 5 C 0.067 3.933 6 C -0.241 4.241 7 C 0.136 3.864 8 N -0.546 5.546 9 C 0.077 3.923 10 C -0.111 4.111 11 C -0.101 4.101 12 C 0.052 3.948 13 H -0.006 1.006 14 C -0.534 4.534 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 0.955 3.045 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.267 1.267 22 C 0.082 3.918 23 C 0.055 3.945 24 N -0.331 5.331 25 H 0.101 0.899 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.187 0.813 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.026 0.974 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.024 0.976 40 H 0.055 0.945 41 H 0.259 0.741 42 H 0.018 0.982 43 H 0.059 0.941 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.750 1.575 -14.401 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 C -0.219 4.219 4 N -0.148 5.148 5 C -0.081 4.081 6 C -0.253 4.253 7 C 0.008 3.992 8 N -0.270 5.270 9 C -0.051 4.051 10 C -0.149 4.149 11 C -0.139 4.139 12 C 0.034 3.966 13 H 0.012 0.988 14 C -0.573 4.573 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.780 3.220 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.045 4.045 23 C -0.130 4.130 24 N -0.152 5.152 25 H 0.120 0.880 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.204 0.796 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -16.521 0.773 -15.848 22.907 hybrid contribution 0.445 1.069 2.096 2.394 sum -16.076 1.841 -13.752 21.236 Atomic orbital electron populations 1.22191 0.92427 1.02584 1.04259 1.21570 0.95699 0.93461 0.84718 1.22208 1.01726 0.92888 1.05068 1.49061 1.49864 1.06922 1.08999 1.22502 1.00175 0.99956 0.85467 1.19960 1.13838 0.94017 0.97501 1.20308 0.87120 1.00606 0.91147 1.62016 1.20149 1.39909 1.04975 1.21925 0.94995 0.91844 0.96342 1.21592 0.96145 0.99866 0.97312 1.21436 1.01335 0.97539 0.93629 1.18584 0.90810 0.93690 0.93556 0.98791 1.21545 0.93295 1.45518 0.96915 0.92835 1.25740 0.96301 0.95640 1.00948 1.70047 1.00334 1.49954 1.35330 0.85612 0.77730 0.78176 0.80455 1.20241 1.21017 1.19133 1.21972 0.97337 0.97142 0.88057 1.23980 0.98547 1.00104 0.90410 1.77264 1.22405 0.94791 1.20744 0.88007 0.93210 0.91881 0.88240 0.92614 0.87552 0.91017 0.79572 0.94290 0.90018 0.90561 0.95615 0.91754 0.93889 0.95710 0.92654 0.93160 0.96410 0.92294 0.79353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.52 71.98 0.69 -1.14 16 2 C 0.15 2.20 3.93 44.99 0.18 2.38 16 3 C -0.16 -1.78 8.83 71.98 0.64 -1.14 16 4 N -0.37 -8.30 3.53 -327.49 -1.15 -9.45 16 5 C 0.07 1.53 8.86 83.54 0.74 2.27 16 6 C -0.24 -6.48 4.25 -20.15 -0.09 -6.56 16 7 C 0.14 3.99 5.76 85.55 0.49 4.48 16 8 N -0.55 -20.05 4.80 -900.92 -4.32 -24.37 16 9 C 0.08 2.66 4.75 86.32 0.41 3.07 16 10 C -0.11 -4.49 6.09 30.64 0.19 -4.30 16 11 C -0.10 -4.97 5.03 30.67 0.15 -4.81 16 12 C 0.05 2.72 2.26 -11.48 -0.03 2.70 16 13 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 14 C -0.53 -29.97 8.56 25.60 0.22 -29.75 16 15 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 16 C 0.01 0.69 5.30 84.65 0.45 1.14 16 17 N -0.92 -54.22 11.36 21.45 0.24 -53.98 16 18 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 C 0.08 3.52 4.65 86.33 0.40 3.92 16 23 C 0.05 1.51 11.96 85.24 1.02 2.53 16 24 N -0.33 -9.27 12.58 -57.02 -0.72 -9.99 16 25 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.07 0.73 7.16 -2.39 -0.02 0.72 16 32 H 0.19 3.34 7.26 -2.91 -0.02 3.32 16 33 H 0.04 1.08 8.08 -2.38 -0.02 1.06 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 2.46 5.66 -2.38 -0.01 2.44 16 36 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 39 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.05 3.08 6.16 -2.39 -0.01 3.06 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 2.48 8.12 -2.38 -0.02 2.46 16 44 H 0.19 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -66.49 345.28 2.48 -64.01 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.95 Total: 12.85 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 5.46 Total: -25.21 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -5.95 Total: -97.79 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -66.49 2.48 -64.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.340 kcal (2) G-P(sol) polarization free energy of solvation -66.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds