Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46507 * 109.47485 * 179.97438 * 3 2 1 5 5 N 1.40082 * 126.03773 * 269.69186 * 4 3 2 6 6 C 1.30835 * 108.20365 * 179.85431 * 5 4 3 7 7 C 1.39870 * 108.20142 * 0.40146 * 6 5 4 8 8 C 1.34944 * 126.03178 * 90.00246 * 4 3 2 9 9 C 1.50698 * 126.12944 * 359.97438 * 8 4 3 10 10 N 1.46902 * 109.47405 * 274.99846 * 9 8 4 11 11 C 1.46842 * 111.00078 * 294.21587 * 10 9 8 12 12 C 1.53044 * 109.52392 * 174.15800 * 11 10 9 13 13 C 1.53113 * 109.27747 * 59.17285 * 12 11 10 14 14 C 1.53118 * 109.16547 * 302.35217 * 13 12 11 15 15 H 1.09004 * 109.49744 * 297.71194 * 14 13 12 16 16 C 1.50700 * 109.50416 * 177.59504 * 14 13 12 17 17 H 1.07998 * 119.99853 * 240.18805 * 16 14 13 18 18 C 1.37878 * 119.99969 * 60.19529 * 16 14 13 19 19 N 1.31515 * 120.00310 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99663 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47246 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47020 * 120.00212 * 20 18 16 23 23 H 1.48507 * 109.46976 * 239.99716 * 20 18 16 24 24 C 1.46838 * 111.00272 * 170.00099 * 10 9 8 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08003 * 125.89988 * 180.15046 * 6 5 4 33 33 H 1.07999 * 126.03820 * 179.73730 * 7 6 5 34 34 H 1.08995 * 109.47318 * 35.00496 * 9 8 4 35 35 H 1.09002 * 109.46880 * 155.00333 * 9 8 4 36 36 H 1.09002 * 109.46142 * 294.17216 * 11 10 9 37 37 H 1.09002 * 109.46793 * 54.13847 * 11 10 9 38 38 H 1.08998 * 109.49727 * 299.23422 * 12 11 10 39 39 H 1.08998 * 109.50273 * 179.12020 * 12 11 10 40 40 H 1.09006 * 109.52294 * 182.43852 * 13 12 11 41 41 H 1.09005 * 109.57598 * 62.28531 * 13 12 11 42 42 H 0.96998 * 120.00287 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46173 * 305.86086 * 24 10 9 44 44 H 1.08999 * 109.46167 * 65.82588 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3288 1.4487 1.1337 6 6 5.5744 1.4433 0.7335 7 6 5.5840 1.4427 -0.6651 8 6 4.2994 1.4423 -1.0903 9 6 3.8383 1.4416 -2.5251 10 7 3.5741 0.0616 -2.9539 11 6 4.8120 -0.7279 -2.9787 12 6 4.4801 -2.1898 -3.2870 13 6 3.7725 -2.2725 -4.6423 14 6 2.5125 -1.4032 -4.6054 15 1 1.8276 -1.7872 -3.8493 16 6 1.8416 -1.4322 -5.9545 17 1 1.7058 -0.5159 -6.5098 18 6 1.4010 -2.6285 -6.4798 19 7 1.5667 -3.7443 -5.8038 20 14 0.5700 -2.6644 -8.1524 21 1 0.5063 -1.2868 -8.7031 22 1 1.3487 -3.5307 -9.0734 23 1 -0.8061 -3.2042 -8.0099 24 6 2.9015 0.0357 -4.2589 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 6.4449 1.4437 1.3728 33 1 6.4616 1.4428 -1.2945 34 1 2.9256 2.0307 -2.6137 35 1 4.6138 1.8759 -3.1560 36 1 5.4770 -0.3363 -3.7485 37 1 5.3032 -0.6639 -2.0078 38 1 3.8262 -2.5860 -2.5102 39 1 5.4006 -2.7725 -3.3208 40 1 3.4956 -3.3070 -4.8461 41 1 4.4401 -1.9132 -5.4254 42 1 1.2565 -4.5858 -6.1731 43 1 2.0049 0.6543 -4.2177 44 1 3.5755 0.4237 -5.0226 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = 61.915349 kcal Electronic energy + Delta-G solvation = -22529.027085 eV Core-core repulsion = 19482.219440 eV Total energy + Delta-G solvation = -3046.807645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13570 -38.13766 -35.21809 -34.04157 -32.14194 -31.13439 -30.26255 -29.51191 -26.20200 -25.74341 -24.94747 -22.10316 -21.92313 -21.40609 -20.85983 -19.29204 -18.61161 -16.66284 -16.33967 -15.41875 -15.18941 -14.69957 -14.45255 -14.20789 -14.09949 -13.65743 -13.43209 -13.21682 -12.94823 -12.57163 -12.30572 -12.12281 -12.07688 -11.82714 -11.69071 -11.30333 -11.21067 -10.98972 -10.73791 -10.66574 -10.63610 -10.44005 -10.11417 -9.86349 -9.50833 -9.23021 -8.99636 -8.73013 -8.37886 -8.30896 -7.75944 -6.00159 -4.06576 2.01989 2.67850 2.97293 3.27752 3.36294 3.39306 4.36638 4.53913 4.64930 4.79636 4.99074 5.13724 5.19589 5.30267 5.31213 5.46388 5.51536 5.64395 5.75794 5.76581 5.81834 5.85112 5.88880 6.07782 6.13082 6.24134 6.26557 6.29682 6.37189 6.47302 6.48645 6.71091 6.72734 6.81728 6.91271 7.16147 7.21420 7.34977 7.59591 7.69165 7.75068 7.90198 8.04310 8.14720 8.44553 8.97700 9.58132 11.05759 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.004845 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.057875 B = 5777.907777 C = 6379.098842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.138 3.862 4 N -0.355 5.355 5 N -0.305 5.305 6 C 0.041 3.959 7 C -0.280 4.280 8 C 0.110 3.890 9 C 0.110 3.890 10 N -0.531 5.531 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.057 3.943 15 H 0.034 0.966 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.068 3.932 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.178 0.822 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.030 0.970 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 9.220 9.849 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.016 3.984 4 N -0.137 5.137 5 N -0.126 5.126 6 C -0.144 4.144 7 C -0.310 4.310 8 C -0.019 4.019 9 C -0.019 4.019 10 N -0.256 5.256 11 C -0.067 4.067 12 C -0.153 4.153 13 C -0.149 4.149 14 C 0.038 3.962 15 H 0.052 0.948 16 C -0.554 4.554 17 H 0.072 0.928 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.058 4.058 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.195 0.805 33 H 0.159 0.841 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.749 8.834 11.184 14.515 hybrid contribution 0.752 0.241 -2.198 2.336 sum 3.501 9.075 8.986 13.242 Atomic orbital electron populations 1.21656 0.94695 1.02505 1.01500 1.21947 0.96327 0.95407 1.04439 1.21727 0.74077 0.99122 1.03428 1.48607 1.06308 1.55694 1.03071 1.77291 1.01760 1.25142 1.08450 1.23701 0.95170 1.00538 0.94972 1.21189 0.96205 1.18613 0.94973 1.21011 0.90933 0.99516 0.90423 1.20641 1.00487 0.92628 0.88158 1.62015 1.24221 1.08278 1.31083 1.22100 0.90087 0.95009 0.99515 1.21655 0.99445 0.93711 1.00532 1.21659 0.96601 1.04481 0.92155 1.18646 0.93409 0.87859 0.96245 0.94819 1.21166 1.37806 0.93333 1.03047 0.92808 1.24923 0.95832 0.95710 0.97285 1.69900 1.46813 0.98202 1.37701 0.86591 0.79263 0.78011 0.84439 1.19863 1.21097 1.21058 1.22346 0.96131 1.01716 0.85650 0.92232 0.93153 0.91949 0.91857 0.88813 0.89218 0.89626 0.80537 0.84131 0.90118 0.92741 0.95774 0.91724 0.92336 0.93551 0.89179 0.95138 0.93099 0.92267 0.96028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.14 -1.89 6.26 -26.74 -0.17 -2.06 16 3 C 0.14 1.71 6.24 -4.04 -0.03 1.68 16 4 N -0.35 -5.18 3.61 -57.14 -0.21 -5.38 16 5 N -0.30 -4.65 12.58 30.62 0.39 -4.26 16 6 C 0.04 0.55 12.03 -17.37 -0.21 0.34 16 7 C -0.28 -3.80 9.53 -40.01 -0.38 -4.18 16 8 C 0.11 1.60 5.67 -82.27 -0.47 1.13 16 9 C 0.11 1.59 5.14 -4.98 -0.03 1.56 16 10 N -0.53 -9.12 4.53 -236.12 -1.07 -10.19 16 11 C 0.06 1.05 5.29 -3.83 -0.02 1.03 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 13 C -0.11 -2.56 5.03 -26.61 -0.13 -2.69 16 14 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 15 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 16 C -0.51 -13.64 8.56 -34.44 -0.29 -13.94 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 18 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 19 N -0.89 -24.85 11.36 55.43 0.63 -24.22 16 20 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.07 1.35 4.68 -3.84 -0.02 1.33 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.51 8.03 -51.93 -0.42 1.10 16 30 H 0.09 1.01 7.15 -51.93 -0.37 0.64 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.18 1.73 8.06 -52.48 -0.42 1.30 16 33 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.08 1.07 7.09 -51.93 -0.37 0.71 16 35 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.07 6.22 -51.93 -0.32 0.74 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.35 6.16 -51.93 -0.32 2.03 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -28.65 347.46 -9.56 -38.21 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.67 Total: 1.50 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -1.84 Total: -16.69 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.26 Total: -44.05 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.65 -9.56 -38.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.122 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds