Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46507 * 109.47485 * 179.97438 * 3 2 1 5 5 N 1.40082 * 126.03773 * 269.69186 * 4 3 2 6 6 C 1.30835 * 108.20365 * 179.85431 * 5 4 3 7 7 C 1.39870 * 108.20142 * 0.40146 * 6 5 4 8 8 C 1.34944 * 126.03178 * 90.00246 * 4 3 2 9 9 C 1.50698 * 126.12944 * 359.97438 * 8 4 3 10 10 N 1.46902 * 109.47405 * 274.99846 * 9 8 4 11 11 C 1.46842 * 111.00078 * 294.21587 * 10 9 8 12 12 C 1.53044 * 109.52392 * 174.15800 * 11 10 9 13 13 C 1.53113 * 109.27747 * 59.17285 * 12 11 10 14 14 C 1.53118 * 109.16547 * 302.35217 * 13 12 11 15 15 H 1.09004 * 109.49744 * 297.71194 * 14 13 12 16 16 C 1.50700 * 109.50416 * 177.59504 * 14 13 12 17 17 H 1.07998 * 119.99853 * 240.18805 * 16 14 13 18 18 C 1.37878 * 119.99969 * 60.19529 * 16 14 13 19 19 N 1.31515 * 120.00310 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99663 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47246 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47020 * 120.00212 * 20 18 16 23 23 H 1.48507 * 109.46976 * 239.99716 * 20 18 16 24 24 C 1.46838 * 111.00272 * 170.00099 * 10 9 8 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08003 * 125.89988 * 180.15046 * 6 5 4 33 33 H 1.07999 * 126.03820 * 179.73730 * 7 6 5 34 34 H 1.08995 * 109.47318 * 35.00496 * 9 8 4 35 35 H 1.09002 * 109.46880 * 155.00333 * 9 8 4 36 36 H 1.09002 * 109.46142 * 294.17216 * 11 10 9 37 37 H 1.09002 * 109.46793 * 54.13847 * 11 10 9 38 38 H 1.08998 * 109.49727 * 299.23422 * 12 11 10 39 39 H 1.08998 * 109.50273 * 179.12020 * 12 11 10 40 40 H 1.09006 * 109.52294 * 182.43852 * 13 12 11 41 41 H 1.09005 * 109.57598 * 62.28531 * 13 12 11 42 42 H 0.96998 * 120.00287 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46173 * 305.86086 * 24 10 9 44 44 H 1.08999 * 109.46167 * 65.82588 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3288 1.4487 1.1337 6 6 5.5744 1.4433 0.7335 7 6 5.5840 1.4427 -0.6651 8 6 4.2994 1.4423 -1.0903 9 6 3.8383 1.4416 -2.5251 10 7 3.5741 0.0616 -2.9539 11 6 4.8120 -0.7279 -2.9787 12 6 4.4801 -2.1898 -3.2870 13 6 3.7725 -2.2725 -4.6423 14 6 2.5125 -1.4032 -4.6054 15 1 1.8276 -1.7872 -3.8493 16 6 1.8416 -1.4322 -5.9545 17 1 1.7058 -0.5159 -6.5098 18 6 1.4010 -2.6285 -6.4798 19 7 1.5667 -3.7443 -5.8038 20 14 0.5700 -2.6644 -8.1524 21 1 0.5063 -1.2868 -8.7031 22 1 1.3487 -3.5307 -9.0734 23 1 -0.8061 -3.2042 -8.0099 24 6 2.9015 0.0357 -4.2589 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 6.4449 1.4437 1.3728 33 1 6.4616 1.4428 -1.2945 34 1 2.9256 2.0307 -2.6137 35 1 4.6138 1.8759 -3.1560 36 1 5.4770 -0.3363 -3.7485 37 1 5.3032 -0.6639 -2.0078 38 1 3.8262 -2.5860 -2.5102 39 1 5.4006 -2.7725 -3.3208 40 1 3.4956 -3.3070 -4.8461 41 1 4.4401 -1.9132 -5.4254 42 1 1.2565 -4.5858 -6.1731 43 1 2.0049 0.6543 -4.2177 44 1 3.5755 0.4237 -5.0226 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = 45.980087 kcal Electronic energy + Delta-G solvation = -22529.718090 eV Core-core repulsion = 19482.219440 eV Total energy + Delta-G solvation = -3047.498650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.19190 -39.66956 -36.24347 -35.74388 -33.83161 -32.22470 -31.80469 -30.96773 -27.28641 -26.92240 -26.88160 -23.63937 -23.20901 -22.82090 -21.90961 -20.40847 -20.29460 -18.43235 -17.62815 -16.87048 -16.45666 -16.24044 -15.70629 -15.50228 -15.37332 -14.91698 -14.86159 -14.56994 -14.30402 -14.03305 -13.87030 -13.55186 -13.23184 -13.01166 -12.88272 -12.85481 -12.68539 -12.53081 -12.32873 -12.22310 -11.83705 -11.70374 -11.69933 -11.49950 -11.36737 -10.89488 -10.64308 -10.36531 -10.18634 -9.42739 -9.12553 -8.06055 -6.19730 0.93860 1.41338 1.43949 1.54301 1.68182 1.95261 2.44598 3.16317 3.21865 3.65218 3.70668 3.98607 4.10142 4.17279 4.20879 4.29395 4.34340 4.40150 4.50410 4.57428 4.64641 4.65495 4.74482 4.81645 4.86311 4.88620 4.92143 4.99889 5.11631 5.14150 5.19328 5.27254 5.29307 5.39845 5.40349 5.54136 5.66198 5.84164 5.96258 6.11018 6.17279 6.23636 6.27579 6.47371 6.86125 6.93979 7.48594 8.98725 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.004845 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.057875 B = 5777.907777 C = 6379.098842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.136 3.864 4 N -0.363 5.363 5 N -0.333 5.333 6 C 0.042 3.958 7 C -0.281 4.281 8 C 0.097 3.903 9 C 0.115 3.885 10 N -0.537 5.537 11 C 0.069 3.931 12 C -0.108 4.108 13 C -0.103 4.103 14 C 0.056 3.944 15 H -0.004 1.004 16 C -0.531 4.531 17 H 0.054 0.946 18 C 0.015 3.985 19 N -0.917 5.917 20 Si 0.951 3.049 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.084 3.916 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.208 0.792 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.025 0.975 42 H 0.259 0.741 43 H 0.063 0.937 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 10.941 10.050 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.015 3.985 4 N -0.145 5.145 5 N -0.154 5.154 6 C -0.143 4.143 7 C -0.311 4.311 8 C -0.032 4.032 9 C -0.014 4.014 10 N -0.262 5.262 11 C -0.058 4.058 12 C -0.146 4.146 13 C -0.141 4.141 14 C 0.037 3.963 15 H 0.014 0.986 16 C -0.570 4.570 17 H 0.072 0.928 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.777 3.223 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.043 4.043 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.225 0.775 33 H 0.176 0.824 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.497 10.572 11.392 15.930 hybrid contribution 0.539 -0.312 -2.210 2.296 sum 4.036 10.260 9.182 14.348 Atomic orbital electron populations 1.21624 0.93310 1.02330 1.02642 1.21806 0.97489 0.95778 1.02154 1.21838 0.73471 0.98439 1.04724 1.48783 1.06881 1.55861 1.03005 1.77263 1.02761 1.26209 1.09203 1.24265 0.95487 0.99119 0.95436 1.21492 0.96424 1.17790 0.95425 1.21102 0.91512 1.00328 0.90304 1.20646 1.01628 0.90706 0.88412 1.61881 1.24447 1.10483 1.29387 1.22003 0.90185 0.93222 1.00438 1.21548 0.99423 0.96014 0.97616 1.21462 0.96498 1.02035 0.94153 1.18548 0.92883 0.90688 0.94160 0.98579 1.21550 1.37900 0.93355 1.04146 0.92759 1.25686 0.96556 0.95461 1.00673 1.70050 1.47714 0.98638 1.39243 0.85614 0.78109 0.78248 0.80315 1.18945 1.20917 1.20872 1.21992 0.96670 0.98651 0.87011 0.92097 0.90942 0.92815 0.93025 0.92066 0.88071 0.88138 0.77506 0.82415 0.89054 0.91255 0.94888 0.90325 0.93966 0.91691 0.92710 0.95642 0.93221 0.91804 0.95993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.91 71.98 0.71 -2.40 16 2 C -0.13 -3.51 6.26 30.59 0.19 -3.32 16 3 C 0.14 3.19 6.24 86.38 0.54 3.73 16 4 N -0.36 -10.00 3.61 -334.70 -1.21 -11.21 16 5 N -0.33 -9.54 12.58 -57.02 -0.72 -10.26 16 6 C 0.04 1.00 12.03 85.24 1.02 2.02 16 7 C -0.28 -6.85 9.53 21.99 0.21 -6.64 16 8 C 0.10 2.58 5.67 41.41 0.23 2.82 16 9 C 0.11 3.04 5.14 85.56 0.44 3.48 16 10 N -0.54 -17.84 4.53 -900.96 -4.08 -21.92 16 11 C 0.07 2.28 5.29 86.33 0.46 2.73 16 12 C -0.11 -4.18 6.09 30.65 0.19 -3.99 16 13 C -0.10 -4.87 5.03 30.67 0.15 -4.72 16 14 C 0.06 2.75 2.26 -11.49 -0.03 2.72 16 15 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 16 C -0.53 -28.52 8.56 25.60 0.22 -28.30 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 18 C 0.01 0.81 5.31 84.65 0.45 1.26 16 19 N -0.92 -52.83 11.36 21.45 0.24 -52.59 16 20 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 C 0.08 3.28 4.68 86.33 0.40 3.68 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.02 8.03 -2.39 -0.02 2.00 16 30 H 0.10 2.11 7.15 -2.39 -0.02 2.09 16 31 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.21 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.09 2.22 7.09 -2.39 -0.02 2.20 16 35 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.03 16 37 H 0.08 2.41 6.22 -2.39 -0.01 2.39 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 2.97 6.16 -2.38 -0.01 2.95 16 41 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.06 2.41 8.02 -2.38 -0.02 2.39 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -62.50 347.46 2.40 -60.10 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.95 Total: 17.78 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 5.20 Total: -26.93 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -5.77 Total: -95.99 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -62.50 2.40 -60.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.078 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds