Wall clock time and date at job start Mon Mar 30 2020 01:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 N 1.46502 * 109.46755 * 175.01915 * 3 2 1 5 5 N 1.40081 * 126.03605 * 275.01500 * 4 3 2 6 6 C 1.30841 * 108.20508 * 180.02562 * 5 4 3 7 7 C 1.39865 * 108.20183 * 0.02562 * 6 5 4 8 8 C 1.34949 * 126.03597 * 95.02481 * 4 3 2 9 9 C 1.50697 * 126.12941 * 359.95350 * 8 4 3 10 10 N 1.46897 * 109.47056 * 84.54656 * 9 8 4 11 11 C 1.46852 * 110.99703 * 51.82579 * 10 9 8 12 12 C 1.53038 * 109.52172 * 185.83930 * 11 10 9 13 13 C 1.53117 * 109.28084 * 300.81720 * 12 11 10 14 14 C 1.53115 * 109.15785 * 57.65514 * 13 12 11 15 15 H 1.08993 * 109.53970 * 62.30761 * 14 13 12 16 16 C 1.50701 * 109.50184 * 182.40864 * 14 13 12 17 17 H 1.08005 * 120.00181 * 119.80881 * 16 14 13 18 18 C 1.37876 * 119.99910 * 299.79989 * 16 14 13 19 19 N 1.31513 * 120.00168 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99983 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47166 * 90.00585 * 20 18 16 22 22 H 1.48499 * 109.47227 * 210.00027 * 20 18 16 23 23 H 1.48495 * 109.47319 * 330.00353 * 20 18 16 24 24 C 1.46844 * 111.00423 * 176.02882 * 10 9 8 25 25 H 1.09001 * 109.47028 * 60.00167 * 1 2 3 26 26 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47357 * 300.00095 * 1 2 3 28 28 H 1.08999 * 109.47301 * 239.99444 * 2 1 3 29 29 H 1.09001 * 109.47028 * 119.99832 * 2 1 3 30 30 H 1.08997 * 109.46926 * 55.01746 * 3 2 1 31 31 H 1.08998 * 109.46888 * 295.01730 * 3 2 1 32 32 H 1.07998 * 125.90052 * 180.26612 * 6 5 4 33 33 H 1.08002 * 126.04253 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47355 * 204.54754 * 9 8 4 35 35 H 1.08996 * 109.47253 * 324.55037 * 9 8 4 36 36 H 1.09003 * 109.45990 * 305.85016 * 11 10 9 37 37 H 1.08998 * 109.46926 * 65.82202 * 11 10 9 38 38 H 1.09001 * 109.50550 * 180.87645 * 12 11 10 39 39 H 1.08997 * 109.50353 * 60.76215 * 12 11 10 40 40 H 1.09002 * 109.52309 * 297.75615 * 13 12 11 41 41 H 1.08999 * 109.57788 * 177.59321 * 13 12 11 42 42 H 0.96992 * 120.00412 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.46376 * 294.18787 * 24 10 9 44 44 H 1.09010 * 109.45782 * 54.14745 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4442 0.1199 5 7 4.2289 1.3788 1.3144 6 6 5.5030 1.4042 1.0178 7 6 5.6262 1.4871 -0.3730 8 6 4.3804 1.5092 -0.9008 9 6 4.0376 1.5919 -2.3659 10 7 3.7889 2.9926 -2.7323 11 6 4.8978 3.8538 -2.3018 12 6 4.5410 5.3181 -2.5679 13 6 4.2725 5.5093 -4.0632 14 6 3.1465 4.5664 -4.4961 15 1 2.2321 4.8202 -3.9601 16 6 2.9159 4.7056 -5.9788 17 1 3.0399 3.8509 -6.6273 18 6 2.5463 5.9242 -6.5075 19 7 2.3956 6.9651 -5.7180 20 14 2.2597 6.0967 -8.3453 21 1 0.8352 5.8113 -8.6531 22 1 2.5902 7.4807 -8.7701 23 1 3.1257 5.1352 -9.0738 24 6 3.5437 3.1239 -4.1741 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6056 1.9814 0.8420 31 1 1.7513 1.9299 -0.9312 32 1 6.3187 1.3639 1.7245 33 1 6.5521 1.5260 -0.9277 34 1 4.8679 1.2039 -2.9559 35 1 3.1436 1.0005 -2.5639 36 1 5.0756 3.7113 -1.2359 37 1 5.7979 3.5925 -2.8582 38 1 5.3705 5.9560 -2.2627 39 1 3.6489 5.5841 -2.0010 40 1 5.1764 5.2807 -4.6278 41 1 3.9763 6.5412 -4.2520 42 1 2.1360 7.8224 -6.0899 43 1 4.4501 2.8658 -4.7217 44 1 2.7379 2.4511 -4.4682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:28 Heat of formation + Delta-G solvation = 62.396975 kcal Electronic energy + Delta-G solvation = -22211.796991 eV Core-core repulsion = 19165.010231 eV Total energy + Delta-G solvation = -3046.786760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20679 -38.12907 -35.40437 -34.06485 -32.13902 -31.25074 -30.30399 -29.46751 -26.30029 -25.80385 -24.93352 -22.26463 -21.94559 -21.43250 -20.88982 -19.35506 -18.60361 -16.70372 -16.28586 -15.47508 -15.40315 -14.75530 -14.42443 -14.30867 -14.10609 -13.75826 -13.45635 -13.21143 -13.06774 -12.58129 -12.32714 -12.27311 -12.10482 -11.92487 -11.70664 -11.51049 -11.31290 -10.97159 -10.96326 -10.71023 -10.67960 -10.47885 -10.12872 -9.85484 -9.49607 -9.22227 -9.02854 -8.72937 -8.40250 -8.29944 -7.75407 -5.99287 -4.05832 1.97934 2.62800 2.94215 3.29411 3.36540 3.39096 4.37166 4.54267 4.60390 4.68392 4.79057 4.94972 5.07183 5.24019 5.31030 5.40130 5.43451 5.57347 5.62167 5.73882 5.76795 5.81049 5.82470 5.86704 5.95842 6.07998 6.09604 6.25243 6.26951 6.37616 6.48674 6.72064 6.73364 6.78334 6.92035 7.13230 7.20428 7.35317 7.59643 7.69290 7.75502 7.86589 8.04982 8.15315 8.45133 8.98168 9.58745 11.06689 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.004408 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.876799 B = 6350.759084 C = 7092.456042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.129 3.871 4 N -0.355 5.355 5 N -0.304 5.304 6 C 0.042 3.958 7 C -0.279 4.279 8 C 0.108 3.892 9 C 0.110 3.890 10 N -0.533 5.533 11 C 0.061 3.939 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.057 3.943 15 H 0.034 0.966 16 C -0.516 4.516 17 H 0.053 0.947 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.068 3.932 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.178 0.822 33 H 0.142 0.858 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.030 0.970 41 H 0.090 0.910 42 H 0.260 0.740 43 H 0.022 0.978 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -11.448 10.584 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.008 3.992 4 N -0.137 5.137 5 N -0.126 5.126 6 C -0.143 4.143 7 C -0.309 4.309 8 C -0.021 4.021 9 C -0.019 4.019 10 N -0.259 5.259 11 C -0.067 4.067 12 C -0.154 4.154 13 C -0.149 4.149 14 C 0.038 3.962 15 H 0.052 0.948 16 C -0.554 4.554 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.059 4.059 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.195 0.805 33 H 0.159 0.841 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.538 -11.157 11.748 16.211 hybrid contribution 1.294 -0.058 -2.056 2.430 sum 1.833 -11.215 9.693 14.936 Atomic orbital electron populations 1.21695 0.94340 1.02210 1.02499 1.21904 0.96719 0.96093 1.02915 1.21842 0.74462 0.98012 1.04885 1.48576 1.06228 1.55615 1.03233 1.77292 1.04750 1.25059 1.05456 1.23714 0.94373 1.00452 0.95770 1.21214 0.96991 1.18322 0.94359 1.21010 0.89981 0.99595 0.91541 1.20705 1.00990 0.92678 0.87555 1.62157 1.41504 1.03592 1.18620 1.22115 0.91118 0.94278 0.99212 1.21663 1.00039 0.93510 1.00188 1.21655 0.98188 1.04431 0.90591 1.18648 0.94704 0.87408 0.95461 0.94834 1.21131 1.46440 0.95440 0.92429 0.92829 1.24926 0.95262 0.95939 0.97633 1.69888 1.47559 1.00696 1.34505 0.86634 0.78477 0.77280 0.85818 1.20712 1.21274 1.20004 1.22352 0.98601 1.01682 0.83264 0.91937 0.92215 0.92352 0.91535 0.91341 0.89201 0.87604 0.80472 0.84062 0.92751 0.90024 0.91717 0.95739 0.93544 0.92360 0.95116 0.89148 0.93034 0.95944 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.14 -1.39 6.26 -26.73 -0.17 -1.56 16 3 C 0.13 1.56 6.20 -4.04 -0.03 1.54 16 4 N -0.35 -5.10 3.61 -57.14 -0.21 -5.31 16 5 N -0.30 -4.56 12.58 30.62 0.39 -4.18 16 6 C 0.04 0.55 12.03 -17.36 -0.21 0.34 16 7 C -0.28 -3.79 9.47 -40.01 -0.38 -4.17 16 8 C 0.11 1.56 5.11 -82.26 -0.42 1.13 16 9 C 0.11 1.61 5.01 -4.98 -0.02 1.58 16 10 N -0.53 -9.42 4.76 -236.11 -1.12 -10.54 16 11 C 0.06 1.08 5.02 -3.83 -0.02 1.06 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16 14 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 15 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.52 -13.80 8.56 -34.44 -0.29 -14.10 16 17 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.03 11.36 55.43 0.63 -24.40 16 20 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.07 1.37 4.68 -3.84 -0.02 1.35 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.11 1.34 7.55 -51.93 -0.39 0.95 16 32 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16 36 H 0.06 1.12 5.88 -51.93 -0.31 0.81 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.17 8.12 -51.92 -0.42 0.75 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -28.99 347.70 -9.61 -38.60 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.73 Total: 0.75 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.79 Total: -16.07 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.31 Total: -44.43 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.99 -9.61 -38.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.999 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds