Wall clock time and date at job start Mon Mar 30 2020 02:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47105 * 2 1 4 4 C 1.53005 * 109.47594 * 119.99621 * 2 1 3 5 5 C 1.50697 * 109.47415 * 295.00819 * 4 2 1 6 6 H 1.08001 * 119.99890 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00335 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99738 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47369 * 60.00115 * 9 7 5 11 11 H 1.48506 * 109.47012 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47392 * 299.99574 * 9 7 5 13 13 C 1.53001 * 109.47335 * 240.00347 * 2 1 3 14 14 N 1.46897 * 109.47361 * 64.99597 * 13 2 1 15 15 C 1.46854 * 110.99665 * 66.05014 * 14 13 2 16 16 C 1.53037 * 109.51886 * 185.84309 * 15 14 13 17 17 C 1.53126 * 109.27801 * 300.81620 * 16 15 14 18 18 C 1.53124 * 109.15878 * 57.65645 * 17 16 15 19 19 H 1.08999 * 109.50059 * 62.28737 * 18 17 16 20 20 C 1.50696 * 109.50007 * 182.40592 * 18 17 16 21 21 C 1.39865 * 125.90085 * 34.71829 * 20 18 17 22 22 C 1.35320 * 107.92050 * 179.86463 * 21 20 18 23 23 N 1.34949 * 107.74238 * 0.39288 * 22 21 20 24 24 H 0.97004 * 126.03364 * 179.75987 * 23 22 21 25 25 N 1.30844 * 125.89624 * 215.02360 * 20 18 17 26 26 C 1.46844 * 111.00090 * 190.25690 * 14 13 2 27 27 H 1.08999 * 109.46498 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47123 * 300.00055 * 1 2 3 29 29 H 1.08998 * 109.47215 * 59.99886 * 1 2 3 30 30 H 1.09003 * 109.46358 * 55.00346 * 4 2 1 31 31 H 1.08998 * 109.47331 * 174.99941 * 4 2 1 32 32 H 0.96999 * 119.99947 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46892 * 304.99515 * 13 2 1 34 34 H 1.09000 * 109.47046 * 184.99893 * 13 2 1 35 35 H 1.08994 * 109.46310 * 65.82535 * 15 14 13 36 36 H 1.09004 * 109.45281 * 305.84691 * 15 14 13 37 37 H 1.09000 * 109.50480 * 180.88135 * 16 15 14 38 38 H 1.08992 * 109.50737 * 60.75564 * 16 15 14 39 39 H 1.08998 * 109.52297 * 177.56592 * 17 16 15 40 40 H 1.08999 * 109.51925 * 297.75795 * 17 16 15 41 41 H 1.07998 * 126.04119 * 359.97438 * 21 20 18 42 42 H 1.08002 * 126.12758 * 180.14753 * 22 21 20 43 43 H 1.09002 * 109.46133 * 294.17882 * 26 14 13 44 44 H 1.09002 * 109.46165 * 54.15521 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6749 -1.5197 3.8512 9 14 1.4987 0.5629 5.2496 10 1 0.0189 0.6703 5.3090 11 1 1.9927 -0.1378 6.4622 12 1 2.0917 1.9228 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.3339 1.3370 -2.4894 16 6 1.7980 2.1567 -3.6654 17 6 2.0386 1.3887 -4.9682 18 6 1.3582 0.0199 -4.8776 19 1 0.2824 0.1550 -4.7656 20 6 1.6397 -0.7658 -6.1323 21 6 2.8240 -0.7279 -6.8754 22 6 2.6854 -1.5728 -7.9232 23 7 1.4536 -2.1192 -7.8507 24 1 1.0762 -2.7604 -8.4731 25 7 0.8162 -1.5970 -6.7179 26 6 1.9068 -0.7378 -3.6664 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6055 -1.7198 1.2951 31 1 3.1264 -0.7994 1.2056 32 1 2.9223 -1.8425 4.7318 33 1 1.6055 -1.7197 -1.2952 34 1 3.1263 -0.7993 -1.2056 35 1 3.4053 1.1805 -2.6140 36 1 2.1511 1.8746 -1.5589 37 1 2.3158 3.1149 -3.7071 38 1 0.7292 2.3253 -3.5345 39 1 1.6197 1.9491 -5.8040 40 1 3.1096 1.2538 -5.1190 41 1 3.6959 -0.1311 -6.6514 42 1 3.4262 -1.7711 -8.6837 43 1 2.9803 -0.8845 -3.7854 44 1 1.4139 -1.7070 -3.5908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602450577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:40 Heat of formation + Delta-G solvation = 52.563507 kcal Electronic energy + Delta-G solvation = -21577.713752 eV Core-core repulsion = 18530.500581 eV Total energy + Delta-G solvation = -3047.213171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.39712 -38.93210 -35.69125 -33.34949 -32.23682 -31.45409 -30.14810 -29.59536 -26.88459 -25.90806 -23.91451 -23.42163 -22.08708 -21.62246 -20.25531 -19.12026 -18.64134 -18.22410 -16.36690 -15.53559 -15.16167 -14.71019 -14.63934 -14.44092 -14.19111 -13.85426 -13.66407 -13.33967 -13.11524 -12.77780 -12.44535 -12.19444 -12.07461 -11.43094 -11.34506 -11.18793 -10.94450 -10.80111 -10.75195 -10.58652 -10.55416 -10.33814 -10.22572 -10.13092 -9.52591 -9.49169 -9.05540 -8.92517 -8.87083 -8.27529 -7.91031 -5.92745 -3.93597 1.70850 2.60520 2.68808 3.37848 3.41978 3.44657 4.13022 4.51000 4.56548 4.59847 4.87497 4.94495 5.13112 5.33628 5.37600 5.42977 5.45177 5.55747 5.64114 5.69078 5.73447 5.78639 5.88908 5.96525 6.01806 6.14628 6.16687 6.23941 6.30291 6.42518 6.46282 6.50411 6.64800 6.79426 7.06916 7.10001 7.24068 7.28982 7.49395 7.52441 7.54061 7.75526 7.92398 8.08121 8.52379 9.12783 9.69458 11.18859 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036507 B = 0.003137 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.788529 B = 8924.120357 C = 9235.172209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.062 3.938 14 N -0.533 5.533 15 C 0.050 3.950 16 C -0.115 4.115 17 C -0.108 4.108 18 C -0.005 4.005 19 H 0.093 0.907 20 C 0.091 3.909 21 C -0.266 4.266 22 C 0.053 3.947 23 N -0.482 5.482 24 H 0.437 0.563 25 N -0.292 5.292 26 C 0.070 3.930 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.146 0.854 42 H 0.174 0.826 43 H 0.032 0.968 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 2.548 -24.225 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.257 5.257 15 C -0.078 4.078 16 C -0.153 4.153 17 C -0.146 4.146 18 C -0.026 4.026 19 H 0.111 0.889 20 C -0.077 4.077 21 C -0.295 4.295 22 C -0.094 4.094 23 N -0.190 5.190 24 H 0.281 0.719 25 N -0.115 5.115 26 C -0.059 4.059 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.164 0.836 42 H 0.191 0.809 43 H 0.050 0.950 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.838 1.974 -24.037 24.133 hybrid contribution 1.434 0.153 0.379 1.491 sum 0.596 2.127 -23.658 23.761 Atomic orbital electron populations 1.21575 0.95761 1.00494 1.00120 1.21229 0.95971 0.99048 0.93687 0.92529 1.19123 0.95851 0.95572 0.90491 1.21206 1.34513 1.08237 0.90997 0.92622 1.25017 0.95391 0.95097 0.99056 1.69960 1.39177 1.21231 1.23411 0.86699 0.78906 0.80098 0.82538 1.20279 1.21426 1.20331 1.22296 0.97555 0.97196 0.89437 1.61909 1.58421 1.03714 1.01685 1.22162 0.95344 0.90958 0.99300 1.21589 1.02257 0.97777 0.93706 1.21589 1.00442 0.94529 0.98025 1.19579 1.02083 0.92987 0.87921 0.88890 1.22352 0.92316 0.95962 0.97033 1.21448 1.01111 1.07990 0.98980 1.22576 0.89218 0.96965 1.00671 1.46361 1.11963 1.37580 1.23076 0.71945 1.77351 1.20888 1.15208 0.98041 1.21963 0.98344 0.96641 0.88977 0.94276 0.92896 0.93837 0.96631 0.97006 0.93095 0.91371 0.95387 0.95269 0.89761 0.91515 0.90973 0.91842 0.91841 0.83610 0.80854 0.95009 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.67 2.26 -90.62 -0.21 -1.88 16 3 H 0.06 1.18 6.23 -51.93 -0.32 0.86 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.12 4.35 -3.82 -0.02 1.10 16 14 N -0.53 -8.12 4.11 -234.67 -0.96 -9.09 16 15 C 0.05 0.69 5.30 -3.83 -0.02 0.67 16 16 C -0.12 -1.28 6.09 -26.65 -0.16 -1.44 16 17 C -0.11 -1.11 4.92 -26.60 -0.13 -1.24 16 18 C 0.00 -0.06 2.81 -91.69 -0.26 -0.32 16 19 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 20 C 0.09 1.09 6.13 -82.41 -0.51 0.58 16 21 C -0.27 -2.62 9.97 -40.01 -0.40 -3.02 16 22 C 0.05 0.41 11.99 -17.22 -0.21 0.20 16 23 N -0.48 -4.26 7.36 30.45 0.22 -4.03 16 24 H 0.44 2.38 8.96 -182.61 -1.64 0.74 16 25 N -0.29 -3.70 12.70 33.67 0.43 -3.27 16 26 C 0.07 0.96 4.72 -3.84 -0.02 0.94 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 29 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 34 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 1.27 6.13 -51.93 -0.32 0.95 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.62 7.19 -51.93 -0.37 0.25 16 41 H 0.15 1.23 7.36 -52.49 -0.39 0.84 16 42 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 1.06 8.01 -51.93 -0.42 0.65 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -32.34 345.46 -10.28 -42.62 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.79 Total: -2.57 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -2.10 Total: -19.18 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.42 Total: -42.98 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.34 -10.28 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.183 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds