Wall clock time and date at job start Mon Mar 30 2020 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47282 * 2 1 4 4 C 1.53007 * 109.46928 * 119.99542 * 2 1 3 5 5 C 1.50705 * 109.47021 * 294.99884 * 4 2 1 6 6 H 1.07991 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99656 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00277 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99766 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46879 * 269.99901 * 9 7 5 11 11 H 1.48503 * 109.47342 * 29.99742 * 9 7 5 12 12 H 1.48507 * 109.47162 * 150.00073 * 9 7 5 13 13 C 1.52997 * 109.47489 * 239.99556 * 2 1 3 14 14 N 1.46896 * 109.47090 * 61.96190 * 13 2 1 15 15 C 1.46840 * 111.00261 * 176.21954 * 14 13 2 16 16 C 1.53046 * 109.52654 * 174.16207 * 15 14 13 17 17 C 1.53119 * 109.27413 * 59.17990 * 16 15 14 18 18 C 1.53126 * 109.16118 * 302.34277 * 17 16 15 19 19 H 1.08998 * 109.50281 * 297.67949 * 18 17 16 20 20 C 1.50703 * 109.50177 * 177.59857 * 18 17 16 21 21 C 1.39864 * 125.89952 * 325.00341 * 20 18 17 22 22 C 1.35314 * 107.91958 * 180.02562 * 21 20 18 23 23 N 1.34949 * 107.74877 * 359.97438 * 22 21 20 24 24 H 0.96992 * 126.03918 * 179.97438 * 23 22 21 25 25 N 1.30832 * 125.89472 * 144.69504 * 20 18 17 26 26 C 1.46853 * 111.00150 * 52.00678 * 14 13 2 27 27 H 1.09001 * 109.47163 * 185.02997 * 1 2 3 28 28 H 1.09007 * 109.47249 * 305.03190 * 1 2 3 29 29 H 1.09003 * 109.47137 * 65.02831 * 1 2 3 30 30 H 1.08997 * 109.46718 * 175.00463 * 4 2 1 31 31 H 1.08994 * 109.46867 * 55.00104 * 4 2 1 32 32 H 0.97003 * 119.99418 * 0.02562 * 8 7 5 33 33 H 1.08996 * 109.47508 * 181.96662 * 13 2 1 34 34 H 1.08998 * 109.46731 * 301.96797 * 13 2 1 35 35 H 1.09002 * 109.46288 * 294.17564 * 15 14 13 36 36 H 1.08998 * 109.46486 * 54.15783 * 15 14 13 37 37 H 1.08994 * 109.49973 * 179.11673 * 16 15 14 38 38 H 1.08994 * 109.50125 * 299.23990 * 16 15 14 39 39 H 1.08996 * 109.52704 * 62.25303 * 17 16 15 40 40 H 1.09007 * 109.52057 * 182.38208 * 17 16 15 41 41 H 1.08000 * 126.04425 * 0.02562 * 21 20 18 42 42 H 1.08007 * 126.12995 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.46061 * 305.86290 * 26 14 13 44 44 H 1.09003 * 109.45709 * 65.82469 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0573 2.4767 6 1 1.0800 0.9743 2.3757 7 6 1.9932 -0.4014 3.7284 8 7 2.6763 -1.5185 3.8513 9 14 1.4984 0.5631 5.2496 10 1 2.5631 1.5434 5.5821 11 1 0.2267 1.2835 4.9871 12 1 1.3121 -0.3709 6.3891 13 6 2.0401 -0.7213 -1.2491 14 7 1.5896 -0.0021 -2.4481 15 6 2.1354 -0.6151 -3.6657 16 6 1.5320 0.0662 -4.8962 17 6 1.8653 1.5603 -4.8610 18 6 1.3280 2.1646 -3.5607 19 1 0.2428 2.0665 -3.5350 20 6 1.7033 3.6225 -3.4907 21 6 2.8885 4.1883 -3.9718 22 6 2.8475 5.5172 -3.7202 23 7 1.6776 5.7830 -3.1023 24 1 1.3758 6.6547 -2.8025 25 7 0.9741 4.5783 -2.9746 26 6 1.9373 1.4225 -2.3691 27 1 -0.3633 -1.0237 0.0901 28 1 -0.3634 0.5899 0.8415 29 1 -0.3633 0.4339 -0.9316 30 1 3.1263 -0.7993 1.2057 31 1 1.6054 -1.7197 1.2953 32 1 2.9329 -2.0195 3.0613 33 1 3.1295 -0.7520 -1.2317 34 1 1.6482 -1.7383 -1.2668 35 1 3.2187 -0.4948 -3.6787 36 1 1.8876 -1.6765 -3.6805 37 1 1.9492 -0.3785 -5.7996 38 1 0.4501 -0.0655 -4.8911 39 1 2.9462 1.6935 -4.9053 40 1 1.4018 2.0571 -5.7134 41 1 3.6940 3.6582 -4.4581 42 1 3.6139 6.2364 -3.9692 43 1 1.5459 1.8409 -1.4418 44 1 3.0215 1.5332 -2.3881 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602450578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:42 Heat of formation + Delta-G solvation = 51.167780 kcal Electronic energy + Delta-G solvation = -21955.462206 eV Core-core repulsion = 18908.188511 eV Total energy + Delta-G solvation = -3047.273695 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31662 -39.04099 -35.79751 -33.55861 -32.46644 -31.13788 -30.05685 -29.64118 -26.45939 -26.06964 -23.75620 -23.58653 -22.13937 -21.58366 -20.17121 -19.17607 -18.80233 -18.19384 -16.74551 -15.58837 -15.12084 -14.70620 -14.66332 -14.47759 -13.86788 -13.69023 -13.64402 -13.44747 -13.14605 -12.94716 -12.78259 -12.16219 -11.71252 -11.63450 -11.38955 -11.30346 -10.96221 -10.88593 -10.74755 -10.61892 -10.50073 -10.39751 -10.10526 -10.02152 -9.60114 -9.39815 -9.35020 -8.82629 -8.40449 -8.24062 -7.98368 -6.27333 -3.94720 1.80541 2.68845 2.78214 3.47779 3.51831 3.67510 4.11201 4.54747 4.62061 4.66392 4.89174 4.92129 5.08113 5.29768 5.42140 5.45002 5.49200 5.58626 5.61580 5.66546 5.68757 5.73076 5.87417 5.91031 5.92591 6.06571 6.11600 6.13485 6.26475 6.37172 6.43067 6.52038 6.54636 6.66560 6.98129 7.13162 7.16482 7.18508 7.40485 7.43085 7.49515 7.61786 7.66541 8.33465 8.56804 8.98599 9.76476 11.13295 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.004461 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.542211 B = 6275.776263 C = 7524.422477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.058 0.942 4 C 0.014 3.986 5 C -0.591 4.591 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.062 3.938 14 N -0.533 5.533 15 C 0.052 3.948 16 C -0.114 4.114 17 C -0.108 4.108 18 C -0.005 4.005 19 H 0.092 0.908 20 C 0.090 3.910 21 C -0.267 4.267 22 C 0.053 3.947 23 N -0.481 5.481 24 H 0.437 0.563 25 N -0.288 5.288 26 C 0.064 3.936 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.002 0.998 31 H 0.007 0.993 32 H 0.268 0.732 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.145 0.855 42 H 0.174 0.826 43 H 0.089 0.911 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 10.396 -20.196 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.023 4.023 5 C -0.630 4.630 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.555 5.555 9 Si 0.898 3.102 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.257 5.257 15 C -0.076 4.076 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.025 4.025 19 H 0.110 0.890 20 C -0.078 4.078 21 C -0.296 4.296 22 C -0.094 4.094 23 N -0.189 5.189 24 H 0.281 0.719 25 N -0.111 5.111 26 C -0.065 4.065 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.020 0.980 31 H 0.026 0.974 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.163 0.837 42 H 0.191 0.809 43 H 0.107 0.893 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.165 10.660 -17.991 20.944 hybrid contribution 1.633 0.450 -1.849 2.508 sum 0.468 11.110 -19.840 22.744 Atomic orbital electron populations 1.21576 0.95400 1.00811 1.00156 1.21184 0.96266 0.98983 0.93413 0.92346 1.19256 0.95065 0.95615 0.92374 1.22057 1.38432 1.10205 0.92259 0.93255 1.25797 0.94793 0.97155 1.01315 1.70749 1.36315 1.14904 1.33484 0.83550 0.75967 0.75254 0.75469 1.21637 1.21501 1.21071 1.22284 0.96960 0.97930 0.89357 1.61925 1.59743 1.01873 1.02177 1.22093 0.96492 0.98782 0.90210 1.21572 1.01907 0.94735 0.97022 1.21587 1.00984 0.95646 0.96417 1.19571 1.01846 0.85448 0.95670 0.88964 1.22298 0.93095 0.95637 0.96769 1.21413 1.01422 0.93513 1.13283 1.22563 0.90828 0.97953 0.98051 1.46361 1.14696 1.09612 1.48186 0.71902 1.77366 1.19731 0.89986 1.24014 1.22103 0.97703 0.88441 0.98238 0.94069 0.92961 0.93526 0.97959 0.97445 0.92170 0.95587 0.91103 0.95244 0.90917 0.91576 0.90984 0.91824 0.91778 0.83721 0.80870 0.89292 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.77 37.16 0.33 -2.18 16 2 C -0.08 -1.70 1.85 -90.62 -0.17 -1.87 16 3 H 0.06 1.30 6.07 -51.93 -0.32 0.98 16 4 C 0.01 0.38 3.76 -27.88 -0.10 0.27 16 5 C -0.59 -17.16 8.47 -34.44 -0.29 -17.45 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -28.76 13.65 55.43 0.76 -28.00 16 9 Si 1.07 26.12 29.90 -169.99 -5.08 21.04 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.06 1.11 4.55 -3.83 -0.02 1.09 16 14 N -0.53 -8.15 4.00 -234.67 -0.94 -9.09 16 15 C 0.05 0.65 5.46 -3.83 -0.02 0.63 16 16 C -0.11 -1.18 6.09 -26.65 -0.16 -1.34 16 17 C -0.11 -1.13 4.92 -26.61 -0.13 -1.26 16 18 C 0.00 -0.06 2.81 -91.69 -0.26 -0.32 16 19 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.09 1.19 6.13 -82.41 -0.51 0.69 16 21 C -0.27 -2.94 9.97 -40.02 -0.40 -3.34 16 22 C 0.05 0.48 11.99 -17.22 -0.21 0.28 16 23 N -0.48 -4.96 7.36 30.45 0.22 -4.74 16 24 H 0.44 3.05 8.96 -182.61 -1.64 1.41 16 25 N -0.29 -4.10 12.70 33.67 0.43 -3.67 16 26 C 0.06 0.97 4.26 -3.83 -0.02 0.95 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 1.15 7.10 -51.93 -0.37 0.78 16 29 H 0.05 0.86 7.47 -51.93 -0.39 0.48 16 30 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 31 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 32 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.63 7.19 -51.93 -0.37 0.26 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.15 1.35 7.37 -52.49 -0.39 0.97 16 42 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.09 1.57 5.74 -51.93 -0.30 1.28 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -33.49 343.08 -10.20 -43.69 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.71 Total: -0.83 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -2.05 Total: -23.57 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.47 Total: -45.50 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -5.08 Total: 21.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.49 -10.20 -43.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.862 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds