Wall clock time and date at job start Mon Mar 30 2020 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47282 * 2 1 4 4 C 1.53007 * 109.46928 * 119.99542 * 2 1 3 5 5 C 1.50705 * 109.47021 * 294.99884 * 4 2 1 6 6 H 1.07991 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99656 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00277 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99766 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46879 * 269.99901 * 9 7 5 11 11 H 1.48503 * 109.47342 * 29.99742 * 9 7 5 12 12 H 1.48507 * 109.47162 * 150.00073 * 9 7 5 13 13 C 1.52997 * 109.47489 * 239.99556 * 2 1 3 14 14 N 1.46896 * 109.47090 * 61.96190 * 13 2 1 15 15 C 1.46840 * 111.00261 * 176.21954 * 14 13 2 16 16 C 1.53046 * 109.52654 * 174.16207 * 15 14 13 17 17 C 1.53119 * 109.27413 * 59.17990 * 16 15 14 18 18 C 1.53126 * 109.16118 * 302.34277 * 17 16 15 19 19 H 1.08998 * 109.50281 * 297.67949 * 18 17 16 20 20 C 1.50703 * 109.50177 * 177.59857 * 18 17 16 21 21 C 1.39864 * 125.89952 * 325.00341 * 20 18 17 22 22 C 1.35314 * 107.91958 * 180.02562 * 21 20 18 23 23 N 1.34949 * 107.74877 * 359.97438 * 22 21 20 24 24 H 0.96992 * 126.03918 * 179.97438 * 23 22 21 25 25 N 1.30832 * 125.89472 * 144.69504 * 20 18 17 26 26 C 1.46853 * 111.00150 * 52.00678 * 14 13 2 27 27 H 1.09001 * 109.47163 * 185.02997 * 1 2 3 28 28 H 1.09007 * 109.47249 * 305.03190 * 1 2 3 29 29 H 1.09003 * 109.47137 * 65.02831 * 1 2 3 30 30 H 1.08997 * 109.46718 * 175.00463 * 4 2 1 31 31 H 1.08994 * 109.46867 * 55.00104 * 4 2 1 32 32 H 0.97003 * 119.99418 * 0.02562 * 8 7 5 33 33 H 1.08996 * 109.47508 * 181.96662 * 13 2 1 34 34 H 1.08998 * 109.46731 * 301.96797 * 13 2 1 35 35 H 1.09002 * 109.46288 * 294.17564 * 15 14 13 36 36 H 1.08998 * 109.46486 * 54.15783 * 15 14 13 37 37 H 1.08994 * 109.49973 * 179.11673 * 16 15 14 38 38 H 1.08994 * 109.50125 * 299.23990 * 16 15 14 39 39 H 1.08996 * 109.52704 * 62.25303 * 17 16 15 40 40 H 1.09007 * 109.52057 * 182.38208 * 17 16 15 41 41 H 1.08000 * 126.04425 * 0.02562 * 21 20 18 42 42 H 1.08007 * 126.12995 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.46061 * 305.86290 * 26 14 13 44 44 H 1.09003 * 109.45709 * 65.82469 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0573 2.4767 6 1 1.0800 0.9743 2.3757 7 6 1.9932 -0.4014 3.7284 8 7 2.6763 -1.5185 3.8513 9 14 1.4984 0.5631 5.2496 10 1 2.5631 1.5434 5.5821 11 1 0.2267 1.2835 4.9871 12 1 1.3121 -0.3709 6.3891 13 6 2.0401 -0.7213 -1.2491 14 7 1.5896 -0.0021 -2.4481 15 6 2.1354 -0.6151 -3.6657 16 6 1.5320 0.0662 -4.8962 17 6 1.8653 1.5603 -4.8610 18 6 1.3280 2.1646 -3.5607 19 1 0.2428 2.0665 -3.5350 20 6 1.7033 3.6225 -3.4907 21 6 2.8885 4.1883 -3.9718 22 6 2.8475 5.5172 -3.7202 23 7 1.6776 5.7830 -3.1023 24 1 1.3758 6.6547 -2.8025 25 7 0.9741 4.5783 -2.9746 26 6 1.9373 1.4225 -2.3691 27 1 -0.3633 -1.0237 0.0901 28 1 -0.3634 0.5899 0.8415 29 1 -0.3633 0.4339 -0.9316 30 1 3.1263 -0.7993 1.2057 31 1 1.6054 -1.7197 1.2953 32 1 2.9329 -2.0195 3.0613 33 1 3.1295 -0.7520 -1.2317 34 1 1.6482 -1.7383 -1.2668 35 1 3.2187 -0.4948 -3.6787 36 1 1.8876 -1.6765 -3.6805 37 1 1.9492 -0.3785 -5.7996 38 1 0.4501 -0.0655 -4.8911 39 1 2.9462 1.6935 -4.9053 40 1 1.4018 2.0571 -5.7134 41 1 3.6940 3.6582 -4.4581 42 1 3.6139 6.2364 -3.9692 43 1 1.5459 1.8409 -1.4418 44 1 3.0215 1.5332 -2.3881 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602450578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:42 Heat of formation + Delta-G solvation = 29.779006 kcal Electronic energy + Delta-G solvation = -21956.389692 eV Core-core repulsion = 18908.188511 eV Total energy + Delta-G solvation = -3048.201181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.16470 -40.22666 -37.40661 -35.18611 -33.89729 -32.50877 -30.91108 -30.58243 -28.50397 -27.53437 -25.35763 -24.77711 -23.71528 -22.40986 -21.17954 -20.61650 -20.00477 -19.03047 -18.85013 -16.86763 -16.27957 -16.18079 -15.67093 -15.61371 -15.48311 -15.26843 -14.80896 -14.52065 -14.44588 -14.24217 -13.75711 -13.54973 -13.40712 -13.24192 -13.01374 -12.85807 -12.52091 -12.30273 -12.03453 -11.96318 -11.83423 -11.64402 -11.50832 -11.43595 -11.28294 -11.14914 -10.55763 -10.53023 -10.32514 -9.63246 -9.24853 -8.66936 -6.35388 1.00034 1.49585 1.59092 1.77095 1.82086 2.05571 2.55477 2.94642 3.17264 3.64238 3.78571 3.94406 4.01054 4.14578 4.16350 4.23361 4.36321 4.37987 4.41491 4.60359 4.63321 4.71168 4.72953 4.78732 4.85485 4.87816 4.88755 4.98696 5.03082 5.06339 5.13207 5.23227 5.26651 5.29965 5.37191 5.44820 5.51004 5.62347 5.69335 6.01497 6.10355 6.20403 6.25044 6.51285 6.61733 6.76579 7.44870 8.74003 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.004461 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.542211 B = 6275.776263 C = 7524.422477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 H 0.048 0.952 4 C 0.018 3.982 5 C -0.605 4.605 6 H 0.046 0.954 7 C -0.040 4.040 8 N -0.940 5.940 9 Si 1.116 2.884 10 H -0.273 1.273 11 H -0.272 1.272 12 H -0.281 1.281 13 C 0.073 3.927 14 N -0.535 5.535 15 C 0.048 3.952 16 C -0.108 4.108 17 C -0.101 4.101 18 C 0.002 3.998 19 H 0.076 0.924 20 C 0.073 3.927 21 C -0.288 4.288 22 C 0.072 3.928 23 N -0.476 5.476 24 H 0.450 0.550 25 N -0.339 5.339 26 C 0.071 3.929 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.066 0.934 30 H -0.018 1.018 31 H -0.010 1.010 32 H 0.255 0.745 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.160 0.840 42 H 0.220 0.780 43 H 0.057 0.943 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 11.837 -21.898 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.019 4.019 5 C -0.643 4.643 6 H 0.065 0.935 7 C -0.237 4.237 8 N -0.578 5.578 9 Si 0.938 3.062 10 H -0.199 1.199 11 H -0.197 1.197 12 H -0.206 1.206 13 C -0.054 4.054 14 N -0.259 5.259 15 C -0.079 4.079 16 C -0.145 4.145 17 C -0.139 4.139 18 C -0.019 4.019 19 H 0.095 0.905 20 C -0.094 4.094 21 C -0.317 4.317 22 C -0.076 4.076 23 N -0.186 5.186 24 H 0.296 0.704 25 N -0.163 5.163 26 C -0.058 4.058 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.000 1.000 31 H 0.009 0.991 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.178 0.822 42 H 0.237 0.763 43 H 0.075 0.925 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.866 12.107 -19.725 23.161 hybrid contribution 1.570 0.051 -1.357 2.075 sum 0.703 12.159 -21.082 24.347 Atomic orbital electron populations 1.21449 0.94578 1.00427 1.00297 1.21002 0.96795 0.98087 0.93075 0.93396 1.19179 0.93658 0.94977 0.94123 1.22419 1.38053 1.10252 0.93541 0.93537 1.27358 0.94044 0.97273 1.05018 1.70885 1.38028 1.16068 1.32844 0.82945 0.76830 0.74463 0.71962 1.19889 1.19652 1.20600 1.22015 0.96412 0.97791 0.89221 1.61921 1.59948 1.01858 1.02177 1.22246 0.96810 0.99294 0.89546 1.21564 1.01707 0.94448 0.96806 1.21562 1.01496 0.95600 0.95219 1.19473 1.00735 0.85739 0.95911 0.90529 1.22435 0.94165 0.95514 0.97265 1.21708 1.01254 0.94543 1.14237 1.23274 0.90597 0.98203 0.95556 1.46417 1.14919 1.09345 1.47874 0.70415 1.77270 1.21697 0.91537 1.25784 1.21971 0.97308 0.88431 0.98060 0.94201 0.94918 0.91549 0.99991 0.99143 0.93583 0.96179 0.90833 0.94916 0.90226 0.88771 0.91307 0.90929 0.90411 0.82215 0.76347 0.92500 0.95472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.60 8.77 71.98 0.63 -3.97 16 2 C -0.07 -3.12 1.85 -10.79 -0.02 -3.14 16 3 H 0.05 2.21 6.07 -2.39 -0.01 2.19 16 4 C 0.02 0.99 3.76 29.85 0.11 1.10 16 5 C -0.60 -35.93 8.47 25.60 0.22 -35.71 16 6 H 0.05 2.74 7.06 -2.92 -0.02 2.72 16 7 C -0.04 -2.41 5.46 84.65 0.46 -1.94 16 8 N -0.94 -60.14 13.65 21.45 0.29 -59.85 16 9 Si 1.12 52.45 29.90 68.60 2.05 54.50 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.07 2.66 4.55 86.30 0.39 3.06 16 14 N -0.53 -16.13 4.00 -896.37 -3.58 -19.71 16 15 C 0.05 1.12 5.46 86.33 0.47 1.60 16 16 C -0.11 -1.93 6.09 30.65 0.19 -1.74 16 17 C -0.10 -1.88 4.92 30.68 0.15 -1.73 16 18 C 0.00 0.06 2.81 -11.49 -0.03 0.03 16 19 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 20 C 0.07 1.89 6.13 43.10 0.26 2.16 16 21 C -0.29 -5.79 9.97 21.99 0.22 -5.57 16 22 C 0.07 1.09 11.99 83.54 1.00 2.09 16 23 N -0.48 -9.12 7.36 -57.59 -0.42 -9.54 16 24 H 0.45 5.58 8.96 -213.34 -1.91 3.67 16 25 N -0.34 -9.58 12.70 -47.39 -0.60 -10.18 16 26 C 0.07 2.18 4.26 86.32 0.37 2.54 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.03 1.45 7.10 -2.38 -0.02 1.44 16 29 H 0.07 2.48 7.47 -2.39 -0.02 2.46 16 30 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 31 H -0.01 -0.56 8.01 -2.39 -0.02 -0.58 16 32 H 0.25 16.49 7.22 -92.71 -0.67 15.82 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.25 7.19 -2.39 -0.02 1.23 16 40 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.16 2.58 7.37 -2.91 -0.02 2.56 16 42 H 0.22 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.06 2.09 5.74 -2.38 -0.01 2.07 16 44 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -74.34 343.08 1.32 -73.02 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.84 Total: 12.97 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 4.42 Total: -41.22 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -4.32 Total: -99.27 kcal Atomic # 14 Polarization: 52.45 SS G_CDS: 2.05 Total: 54.50 kcal Total: -74.34 1.32 -73.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602450578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.801 kcal (2) G-P(sol) polarization free energy of solvation -74.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds