Wall clock time and date at job start Mon Mar 30 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47518 * 2 1 4 4 C 1.53006 * 109.47021 * 239.99913 * 2 1 3 5 5 C 1.50699 * 109.46866 * 65.00201 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47141 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47494 * 119.99680 * 9 7 5 12 12 H 1.48505 * 109.47047 * 239.99860 * 9 7 5 13 13 C 1.52999 * 109.47148 * 120.00339 * 2 1 3 14 14 N 1.46899 * 109.46893 * 294.99781 * 13 2 1 15 15 C 1.46844 * 110.99945 * 294.20946 * 14 13 2 16 16 C 1.53034 * 109.52481 * 174.16576 * 15 14 13 17 17 C 1.53115 * 109.28216 * 59.17642 * 16 15 14 18 18 C 1.53121 * 109.16264 * 302.34926 * 17 16 15 19 19 H 1.08999 * 109.50119 * 297.71576 * 18 17 16 20 20 N 1.46501 * 109.50493 * 177.59354 * 18 17 16 21 21 C 1.36877 * 126.39409 * 120.19881 * 20 18 17 22 22 C 1.34672 * 106.81595 * 179.97438 * 21 20 18 23 23 N 1.34125 * 108.02111 * 359.97438 * 22 21 20 24 24 C 1.30500 * 109.25278 * 359.72689 * 23 22 21 25 25 C 1.46849 * 110.99883 * 170.00192 * 14 13 2 26 26 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46905 * 300.00035 * 1 2 3 28 28 H 1.09004 * 109.47446 * 59.99546 * 1 2 3 29 29 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 30 30 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 31 31 H 0.96992 * 120.00032 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46920 * 54.99692 * 13 2 1 33 33 H 1.08995 * 109.47278 * 174.99625 * 13 2 1 34 34 H 1.09002 * 109.46183 * 294.17943 * 15 14 13 35 35 H 1.08997 * 109.46304 * 54.14593 * 15 14 13 36 36 H 1.09008 * 109.50021 * 299.23685 * 16 15 14 37 37 H 1.09001 * 109.50512 * 179.12115 * 16 15 14 38 38 H 1.08996 * 109.52750 * 182.44616 * 17 16 15 39 39 H 1.08999 * 109.57342 * 62.28255 * 17 16 15 40 40 H 1.08003 * 126.59523 * 0.03786 * 21 20 18 41 41 H 1.07997 * 125.98955 * 180.02562 * 22 21 20 42 42 H 1.08006 * 125.64947 * 180.28739 * 24 23 22 43 43 H 1.09006 * 109.46013 * 305.85344 * 25 14 13 44 44 H 1.09004 * 109.46423 * 65.82991 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9922 -0.4022 -3.7283 8 7 2.6754 -1.5193 -3.8513 9 14 1.4987 0.5629 -5.2496 10 1 0.7422 1.7746 -4.8433 11 1 2.7170 0.9668 -5.9965 12 1 0.6439 -0.2855 -6.1184 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.3292 1.3393 2.4863 16 6 1.7934 2.1584 3.6626 17 6 2.0396 1.3929 4.9656 18 6 1.3640 0.0216 4.8783 19 1 0.2875 0.1527 4.7687 20 7 1.6432 -0.7399 6.0983 21 6 0.7177 -1.2263 6.9817 22 6 1.4019 -1.8599 7.9533 23 7 2.7094 -1.7636 7.6705 24 6 2.8611 -1.0993 6.5575 25 6 1.9124 -0.7356 3.6666 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 3.1262 -0.7996 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.9226 -1.8422 -4.7319 32 1 1.6053 -1.7199 1.2950 33 1 3.1262 -0.7996 1.2055 34 1 3.4016 1.1868 2.6086 35 1 2.1426 1.8752 1.5556 36 1 0.7235 2.3231 3.5340 37 1 2.3078 3.1186 3.7019 38 1 1.6207 1.9526 5.8018 39 1 3.1113 1.2620 5.1153 40 1 -0.3552 -1.1228 6.9124 41 1 0.9729 -2.3590 8.8096 42 1 3.8047 -0.8718 6.0838 43 1 1.4229 -1.7068 3.5932 44 1 2.9867 -0.8782 3.7835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602458926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:58 Heat of formation + Delta-G solvation = 31.795532 kcal Electronic energy + Delta-G solvation = -21719.457580 eV Core-core repulsion = 18671.343841 eV Total energy + Delta-G solvation = -3048.113738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.04098 -40.21391 -37.35128 -35.23225 -34.05835 -33.01370 -30.80367 -29.85865 -28.89600 -27.45358 -25.44310 -24.61246 -23.62058 -22.50825 -21.94645 -20.53140 -20.34936 -18.64823 -18.19779 -16.85408 -16.44026 -16.27906 -16.10616 -15.75175 -15.39366 -14.92956 -14.83168 -14.68499 -14.49115 -14.30024 -14.18709 -13.89332 -13.55444 -13.28003 -12.95462 -12.77127 -12.63887 -12.53411 -12.24264 -12.08524 -11.95208 -11.74084 -11.66528 -11.31991 -11.05620 -10.93617 -10.91121 -10.53565 -10.49192 -9.42631 -9.33121 -8.17640 -6.26517 1.15756 1.39828 1.40754 1.53224 1.77271 2.24160 2.41885 2.92534 3.16301 3.53126 3.62445 3.82982 3.86062 3.97789 4.08221 4.14908 4.23382 4.34957 4.44470 4.50755 4.56519 4.58450 4.63767 4.70326 4.80932 4.83421 4.88331 4.95418 4.97994 5.03378 5.15843 5.28318 5.30504 5.43494 5.48535 5.52463 5.55777 5.80414 5.85984 5.89314 5.99634 6.10656 6.29951 6.31095 6.90189 7.15831 7.42070 8.94661 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037094 B = 0.003178 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.647867 B = 8807.932023 C = 9096.073255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 H 0.059 0.941 4 C 0.032 3.968 5 C -0.525 4.525 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.074 3.926 14 N -0.527 5.527 15 C 0.043 3.957 16 C -0.102 4.102 17 C -0.120 4.120 18 C 0.147 3.853 19 H 0.118 0.882 20 N -0.449 5.449 21 C -0.048 4.048 22 C -0.058 4.058 23 N -0.536 5.536 24 C 0.172 3.828 25 C 0.052 3.948 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.037 0.963 29 H -0.016 1.016 30 H -0.012 1.012 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.201 0.799 41 H 0.182 0.818 42 H 0.213 0.787 43 H 0.072 0.928 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 6.437 20.375 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 H 0.077 0.923 4 C -0.006 4.006 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.207 1.207 13 C -0.054 4.054 14 N -0.251 5.251 15 C -0.085 4.085 16 C -0.141 4.141 17 C -0.158 4.158 18 C 0.044 3.956 19 H 0.136 0.864 20 N -0.131 5.131 21 C -0.181 4.181 22 C -0.205 4.205 23 N -0.255 5.255 24 C -0.110 4.110 25 C -0.077 4.077 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.002 0.998 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.218 0.782 41 H 0.199 0.801 42 H 0.229 0.771 43 H 0.090 0.910 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.037 6.176 20.587 21.869 hybrid contribution 0.429 -0.069 -1.663 1.719 sum -3.607 6.107 18.924 20.210 Atomic orbital electron populations 1.21474 0.94557 1.00320 1.00601 1.21025 0.96767 0.98592 0.92527 0.92266 1.19025 0.94003 0.94686 0.92888 1.21661 1.34164 1.08523 0.91961 0.91951 1.25949 0.95331 0.96081 1.02677 1.70109 1.40454 1.23015 1.24178 0.85476 0.78032 0.78962 0.79064 1.18386 1.20656 1.20703 1.22019 0.96968 0.96946 0.89421 1.61837 1.58622 1.03910 1.00772 1.22306 0.95693 0.90102 1.00379 1.21501 1.02890 0.98188 0.91494 1.21913 1.01081 0.93551 0.99274 1.21479 1.02981 0.90791 0.80372 0.86384 1.45771 1.07100 1.40632 1.19616 1.23233 0.97403 1.04267 0.93222 1.22685 0.89225 1.06208 1.02397 1.70267 1.20409 1.19872 1.14928 1.25149 0.91022 1.00699 0.94128 1.22295 0.99090 0.96947 0.89350 0.94753 0.91218 0.94427 0.99751 0.99330 0.93007 0.91634 0.96105 0.95063 0.90573 0.90253 0.89069 0.89933 0.91230 0.78230 0.80075 0.77097 0.90960 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.02 8.89 71.98 0.64 -3.38 16 2 C -0.07 -2.71 2.26 -10.79 -0.02 -2.74 16 3 H 0.06 2.27 6.22 -2.39 -0.01 2.26 16 4 C 0.03 1.62 4.45 29.85 0.13 1.75 16 5 C -0.52 -29.06 8.41 25.60 0.22 -28.85 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -56.87 13.29 21.45 0.28 -56.59 16 9 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.07 2.38 4.35 86.30 0.38 2.76 16 14 N -0.53 -12.82 4.11 -896.36 -3.68 -16.50 16 15 C 0.04 0.92 5.30 86.33 0.46 1.38 16 16 C -0.10 -1.52 6.09 30.64 0.19 -1.33 16 17 C -0.12 -1.63 5.36 30.67 0.16 -1.47 16 18 C 0.15 2.33 3.02 45.04 0.14 2.46 16 19 H 0.12 1.73 8.08 -2.39 -0.02 1.71 16 20 N -0.45 -8.05 2.62 -506.26 -1.33 -9.38 16 21 C -0.05 -0.82 11.54 83.09 0.96 0.14 16 22 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 23 N -0.54 -13.57 11.25 -200.31 -2.25 -15.83 16 24 C 0.17 3.60 11.49 180.26 2.07 5.67 16 25 C 0.05 1.07 4.80 86.33 0.41 1.49 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 2.10 7.75 -2.39 -0.02 2.08 16 28 H 0.04 1.45 6.95 -2.38 -0.02 1.44 16 29 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.07 2.16 7.99 -2.39 -0.02 2.14 16 33 H 0.02 0.70 8.12 -2.39 -0.02 0.69 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 1.88 6.12 -2.39 -0.01 1.87 16 36 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.96 7.89 -2.39 -0.02 0.94 16 40 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.21 3.48 8.06 -2.91 -0.02 3.45 16 43 H 0.07 1.62 8.02 -2.38 -0.02 1.61 16 44 H 0.04 0.79 7.92 -2.39 -0.02 0.77 16 Total: -1.00 -67.08 347.00 3.17 -63.90 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.94 Total: 10.52 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 7.18 Total: -22.05 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -6.98 Total: -98.30 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -67.08 3.17 -63.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602458926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.699 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds