Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.50709 * 109.47130 * 179.97438 * 15 14 13 17 17 C 1.38879 * 120.33354 * 90.00026 * 16 15 14 18 18 C 1.38293 * 118.50831 * 179.97438 * 17 16 15 19 19 C 1.39142 * 119.09292 * 359.97438 * 18 17 16 20 20 N 1.39002 * 119.70140 * 180.02562 * 19 18 17 21 21 C 1.46500 * 120.00387 * 5.00457 * 20 19 18 22 22 C 1.46505 * 119.99587 * 184.99984 * 20 19 18 23 23 N 1.32391 * 120.58808 * 0.02589 * 19 18 17 24 24 C 1.31972 * 121.62368 * 359.68299 * 23 19 18 25 25 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 26 26 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 28 28 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 29 29 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 32 32 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 33 33 H 1.00907 * 110.99905 * 303.95595 * 14 13 2 34 34 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 35 35 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 36 36 H 1.08006 * 120.74593 * 359.95068 * 17 16 15 37 37 H 1.07998 * 120.45774 * 179.97438 * 18 17 16 38 38 H 1.08991 * 109.47315 * 89.99873 * 21 20 19 39 39 H 1.08998 * 109.47171 * 209.99947 * 21 20 19 40 40 H 1.09005 * 109.46933 * 329.99315 * 21 20 19 41 41 H 1.08997 * 109.46969 * 60.00497 * 22 20 19 42 42 H 1.09004 * 109.46627 * 179.97438 * 22 20 19 43 43 H 1.08994 * 109.47342 * 299.99922 * 22 20 19 44 44 H 1.08005 * 119.57091 * 180.28931 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7098 0.1791 4.8708 17 6 0.4920 -0.0656 5.4919 18 6 0.1484 0.6959 6.5940 19 6 1.0298 1.6754 7.0410 20 7 0.6974 2.4477 8.1479 21 6 -0.5231 2.1570 8.9042 22 6 1.5678 3.5525 8.5582 23 7 2.1820 1.8783 6.4214 24 6 2.5383 1.1631 5.3711 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6053 -1.7198 -1.2952 29 1 3.1262 -0.7995 -1.2056 30 1 2.9362 -2.0177 -3.0611 31 1 1.6053 -1.7199 1.2950 32 1 3.1263 -0.7996 1.2055 33 1 1.9883 0.9872 2.3967 34 1 1.6921 -1.6248 3.7300 35 1 3.2127 -0.7039 3.6399 36 1 -0.1720 -0.8331 5.1223 37 1 -0.7911 0.5325 7.1009 38 1 -0.2979 1.4441 9.6974 39 1 -0.9073 3.0782 9.3421 40 1 -1.2722 1.7323 8.2359 41 1 1.6445 4.2754 7.7461 42 1 1.1472 4.0387 9.4384 43 1 2.5588 3.1656 8.7950 44 1 3.4882 1.3536 4.8938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602507956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = 27.480278 kcal Electronic energy + Delta-G solvation = -20639.937649 eV Core-core repulsion = 17591.636787 eV Total energy + Delta-G solvation = -3048.300862 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45496 -37.41235 -36.48819 -34.35445 -32.66939 -31.99181 -30.42297 -28.52688 -26.91150 -26.29949 -24.88202 -23.72052 -23.06562 -22.15909 -21.07922 -19.32404 -17.65518 -16.89016 -16.66663 -15.65105 -15.55513 -15.07788 -14.72350 -14.53003 -14.41895 -13.86985 -13.69541 -13.44837 -13.11472 -13.05770 -12.90935 -12.56732 -12.35470 -12.25379 -11.97892 -11.63035 -11.44455 -11.32828 -10.93708 -10.66375 -10.24074 -10.08250 -10.03156 -9.81013 -9.78174 -9.49368 -9.39212 -8.43795 -8.26439 -8.17063 -7.67956 -6.29413 -3.97191 1.17603 1.35903 2.68366 3.46965 3.50665 3.66230 3.76897 4.33573 4.54924 4.62178 4.65263 4.81518 4.83195 4.96268 5.03856 5.06941 5.14228 5.24604 5.35874 5.43550 5.46925 5.56244 5.61322 5.68630 5.76411 5.84345 5.91430 6.08841 6.30895 6.35211 6.46089 6.48065 6.62811 6.68172 6.92400 7.09965 7.14301 7.15400 7.30794 7.45279 7.59082 7.66093 8.02623 8.30736 8.54280 8.96158 9.74159 11.11106 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037615 B = 0.002521 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.200096 B =11105.288969 C =11234.173829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.014 3.986 5 C -0.592 4.592 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.683 5.683 15 C 0.109 3.891 16 C -0.186 4.186 17 C -0.012 4.012 18 C -0.240 4.240 19 C 0.395 3.605 20 N -0.623 5.623 21 C 0.096 3.904 22 C 0.108 3.892 23 N -0.541 5.541 24 C 0.152 3.848 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.007 0.993 29 H 0.003 0.997 30 H 0.268 0.732 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.338 0.662 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 5.790 26.516 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.554 5.554 9 Si 0.899 3.101 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.066 4.066 14 N -0.314 5.314 15 C -0.021 4.021 16 C -0.191 4.191 17 C -0.039 4.039 18 C -0.265 4.265 19 C 0.161 3.839 20 N -0.338 5.338 21 C -0.047 4.047 22 C -0.035 4.035 23 N -0.257 5.257 24 C -0.006 4.006 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.156 0.844 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.497 6.278 25.366 26.516 hybrid contribution 0.297 -0.468 1.352 1.461 sum -4.200 5.811 26.718 27.664 Atomic orbital electron populations 1.21571 0.95540 1.00491 1.00289 1.21055 0.96131 0.98844 0.93392 0.92716 1.19258 0.95133 0.95618 0.92382 1.22062 1.38543 1.10221 0.92252 0.93191 1.25824 0.94746 0.97204 1.01391 1.70749 1.36038 1.15094 1.33505 0.83532 0.76315 0.74955 0.75338 1.21527 1.21540 1.21107 1.22177 0.97119 0.97735 0.89564 1.60594 1.64015 1.05754 1.01005 1.20667 0.97250 0.96921 0.87239 1.20525 0.96937 1.01542 1.00079 1.21212 0.94584 0.96212 0.91859 1.21421 1.01719 1.01379 1.01959 1.18308 0.89551 0.88859 0.87185 1.46147 1.25394 1.33575 1.28698 1.21709 0.85949 1.01402 0.95628 1.21464 0.94203 0.88452 0.99420 1.67157 1.16896 1.29964 1.11731 1.22291 0.98363 0.89652 0.90295 0.92705 0.94286 0.93803 0.97493 0.97857 0.92170 0.91575 0.95804 0.84450 0.90523 0.94716 0.84886 0.85197 0.93160 0.91139 0.91044 0.92683 0.91497 0.92526 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.57 2.48 -90.62 -0.22 -1.79 16 3 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -16.99 8.41 -34.44 -0.29 -17.28 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.54 13.65 55.43 0.76 -27.79 16 9 Si 1.07 25.83 29.90 -169.99 -5.08 20.74 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.06 1.08 5.07 -3.83 -0.02 1.06 16 14 N -0.68 -9.97 5.94 -115.06 -0.68 -10.65 16 15 C 0.11 1.33 5.83 -4.97 -0.03 1.30 16 16 C -0.19 -2.20 5.41 -104.46 -0.57 -2.76 16 17 C -0.01 -0.14 9.85 -39.32 -0.39 -0.52 16 18 C -0.24 -2.55 9.27 -39.23 -0.36 -2.91 16 19 C 0.39 4.64 7.37 -155.03 -1.14 3.49 16 20 N -0.62 -5.83 3.39 -189.67 -0.64 -6.47 16 21 C 0.10 0.57 10.25 59.85 0.61 1.18 16 22 C 0.11 0.85 10.19 59.85 0.61 1.46 16 23 N -0.54 -6.98 9.57 -12.44 -0.12 -7.10 16 24 C 0.15 1.82 10.84 -17.57 -0.19 1.63 16 25 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 28 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 29 H 0.00 0.09 8.00 -51.93 -0.42 -0.33 16 30 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.34 4.86 8.72 -39.29 -0.34 4.52 16 34 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 35 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 36 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.13 1.07 6.02 -52.49 -0.32 0.75 16 38 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.29 7.92 -51.93 -0.41 -0.12 16 40 H 0.07 0.39 5.98 -51.93 -0.31 0.08 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.35 7.79 -51.93 -0.40 -0.06 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -32.76 357.59 -9.73 -42.49 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.49 Total: 0.15 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -1.86 Total: -16.75 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.69 Total: -52.01 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.76 -9.73 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602507956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.969 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds