Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.50709 * 109.47130 * 179.97438 * 15 14 13 17 17 C 1.38879 * 120.33354 * 90.00026 * 16 15 14 18 18 C 1.38293 * 118.50831 * 179.97438 * 17 16 15 19 19 C 1.39142 * 119.09292 * 359.97438 * 18 17 16 20 20 N 1.39002 * 119.70140 * 180.02562 * 19 18 17 21 21 C 1.46500 * 120.00387 * 5.00457 * 20 19 18 22 22 C 1.46505 * 119.99587 * 184.99984 * 20 19 18 23 23 N 1.32391 * 120.58808 * 0.02589 * 19 18 17 24 24 C 1.31972 * 121.62368 * 359.68299 * 23 19 18 25 25 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 26 26 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 28 28 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 29 29 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 32 32 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 33 33 H 1.00907 * 110.99905 * 303.95595 * 14 13 2 34 34 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 35 35 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 36 36 H 1.08006 * 120.74593 * 359.95068 * 17 16 15 37 37 H 1.07998 * 120.45774 * 179.97438 * 18 17 16 38 38 H 1.08991 * 109.47315 * 89.99873 * 21 20 19 39 39 H 1.08998 * 109.47171 * 209.99947 * 21 20 19 40 40 H 1.09005 * 109.46933 * 329.99315 * 21 20 19 41 41 H 1.08997 * 109.46969 * 60.00497 * 22 20 19 42 42 H 1.09004 * 109.46627 * 179.97438 * 22 20 19 43 43 H 1.08994 * 109.47342 * 299.99922 * 22 20 19 44 44 H 1.08005 * 119.57091 * 180.28931 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7098 0.1791 4.8708 17 6 0.4920 -0.0656 5.4919 18 6 0.1484 0.6959 6.5940 19 6 1.0298 1.6754 7.0410 20 7 0.6974 2.4477 8.1479 21 6 -0.5231 2.1570 8.9042 22 6 1.5678 3.5525 8.5582 23 7 2.1820 1.8783 6.4214 24 6 2.5383 1.1631 5.3711 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6053 -1.7198 -1.2952 29 1 3.1262 -0.7995 -1.2056 30 1 2.9362 -2.0177 -3.0611 31 1 1.6053 -1.7199 1.2950 32 1 3.1263 -0.7996 1.2055 33 1 1.9883 0.9872 2.3967 34 1 1.6921 -1.6248 3.7300 35 1 3.2127 -0.7039 3.6399 36 1 -0.1720 -0.8331 5.1223 37 1 -0.7911 0.5325 7.1009 38 1 -0.2979 1.4441 9.6974 39 1 -0.9073 3.0782 9.3421 40 1 -1.2722 1.7323 8.2359 41 1 1.6445 4.2754 7.7461 42 1 1.1472 4.0387 9.4384 43 1 2.5588 3.1656 8.7950 44 1 3.4882 1.3536 4.8938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602507956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = 7.764352 kcal Electronic energy + Delta-G solvation = -20640.792596 eV Core-core repulsion = 17591.636787 eV Total energy + Delta-G solvation = -3049.155808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.27891 -38.61108 -37.54007 -35.90564 -34.21894 -33.17349 -31.49308 -29.07939 -28.53717 -27.72150 -26.20555 -24.88767 -24.23245 -23.55119 -21.93861 -20.99820 -18.84498 -18.38267 -17.72984 -16.71069 -16.35096 -16.17494 -15.87661 -15.68617 -15.55627 -15.26779 -15.10039 -14.97957 -14.17840 -13.95407 -13.77838 -13.64948 -13.45877 -13.20097 -13.10634 -13.00522 -12.86083 -12.82342 -12.49859 -12.38177 -11.94089 -11.82559 -11.57076 -11.33891 -10.86036 -10.64341 -10.54024 -10.51292 -10.33090 -9.35920 -8.64636 -8.44430 -6.33266 0.33071 0.50423 1.52504 1.61873 1.79259 2.04451 2.58065 2.87556 3.19453 3.42940 3.59024 3.90758 4.01494 4.08954 4.11638 4.20561 4.26200 4.39546 4.43518 4.45935 4.51935 4.59735 4.70765 4.78734 4.82021 4.85066 4.88665 4.90775 4.94059 4.95074 5.09306 5.11083 5.33501 5.37713 5.47201 5.50022 5.65252 5.66226 5.99915 6.03462 6.12375 6.23720 6.38742 6.43304 6.63943 7.20131 7.47289 8.76270 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037615 B = 0.002521 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.200096 B =11105.288969 C =11234.173829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 H 0.050 0.950 4 C 0.015 3.985 5 C -0.604 4.604 6 H 0.051 0.949 7 C -0.044 4.044 8 N -0.942 5.942 9 Si 1.118 2.882 10 H -0.273 1.273 11 H -0.270 1.270 12 H -0.284 1.284 13 C 0.077 3.923 14 N -0.681 5.681 15 C 0.114 3.886 16 C -0.194 4.194 17 C -0.018 4.018 18 C -0.241 4.241 19 C 0.379 3.621 20 N -0.627 5.627 21 C 0.090 3.910 22 C 0.107 3.893 23 N -0.565 5.565 24 C 0.142 3.858 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.067 0.933 28 H -0.012 1.012 29 H -0.017 1.017 30 H 0.254 0.746 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.340 0.660 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.097 0.903 43 H 0.045 0.955 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 6.757 27.896 29.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.022 4.022 5 C -0.642 4.642 6 H 0.069 0.931 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.939 3.061 10 H -0.198 1.198 11 H -0.195 1.195 12 H -0.209 1.209 13 C -0.052 4.052 14 N -0.312 5.312 15 C -0.015 4.015 16 C -0.200 4.200 17 C -0.044 4.044 18 C -0.266 4.266 19 C 0.144 3.856 20 N -0.341 5.341 21 C -0.052 4.052 22 C -0.036 4.036 23 N -0.283 5.283 24 C -0.015 4.015 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.006 0.994 29 H 0.001 0.999 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.158 0.842 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.115 0.885 43 H 0.064 0.936 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.939 7.254 26.800 28.393 hybrid contribution 0.731 -0.745 1.050 1.480 sum -5.208 6.509 27.850 29.071 Atomic orbital electron populations 1.21464 0.94606 1.00399 1.00417 1.20897 0.96773 0.98190 0.92867 0.93176 1.19199 0.93778 0.94947 0.94280 1.22457 1.37951 1.10323 0.93448 0.93106 1.27394 0.94103 0.97348 1.05206 1.70887 1.37934 1.16361 1.32857 0.82923 0.76629 0.74663 0.71840 1.19833 1.19466 1.20947 1.21864 0.96693 0.97435 0.89216 1.60541 1.64124 1.05724 1.00770 1.20642 0.97642 0.96958 0.86218 1.20453 0.97519 1.01855 1.00142 1.21446 0.94486 0.96511 0.91979 1.21671 1.02398 1.00722 1.01783 1.18705 0.89509 0.89492 0.87856 1.46485 1.26326 1.33210 1.28122 1.21939 0.84787 1.02831 0.95644 1.21514 0.93988 0.87981 1.00116 1.67175 1.17907 1.30767 1.12427 1.22479 0.98891 0.89749 0.90378 0.94637 0.94462 0.91455 0.99380 0.99853 0.93619 0.91580 0.96152 0.84221 0.90019 0.94109 0.83595 0.82880 0.92261 0.89086 0.90538 0.93935 0.88478 0.93628 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 8.89 71.98 0.64 -3.72 16 2 C -0.07 -2.83 2.48 -10.79 -0.03 -2.85 16 3 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.02 0.82 3.76 29.85 0.11 0.93 16 5 C -0.60 -34.93 8.41 25.60 0.22 -34.72 16 6 H 0.05 2.88 7.06 -2.91 -0.02 2.86 16 7 C -0.04 -2.59 5.46 84.65 0.46 -2.13 16 8 N -0.94 -59.66 13.65 21.45 0.29 -59.37 16 9 Si 1.12 51.47 29.90 68.60 2.05 53.52 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.08 2.60 5.07 86.30 0.44 3.04 16 14 N -0.68 -18.90 5.94 -517.93 -3.08 -21.98 16 15 C 0.11 2.64 5.83 85.56 0.50 3.14 16 16 C -0.19 -4.36 5.41 -19.76 -0.11 -4.47 16 17 C -0.02 -0.37 9.85 22.44 0.22 -0.15 16 18 C -0.24 -4.67 9.27 22.50 0.21 -4.46 16 19 C 0.38 8.43 7.37 133.07 0.98 9.41 16 20 N -0.63 -10.65 3.39 -753.98 -2.56 -13.21 16 21 C 0.09 0.83 10.25 127.77 1.31 2.14 16 22 C 0.11 1.56 10.19 127.77 1.30 2.86 16 23 N -0.57 -14.28 9.57 -193.27 -1.85 -16.13 16 24 C 0.14 3.34 10.84 84.62 0.92 4.25 16 25 H 0.03 1.49 6.95 -2.39 -0.02 1.48 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 2.30 7.75 -2.39 -0.02 2.28 16 28 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 29 H -0.02 -0.95 8.00 -2.39 -0.02 -0.96 16 30 H 0.25 16.30 7.22 -92.71 -0.67 15.63 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.34 9.34 8.72 -89.69 -0.78 8.55 16 34 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 35 H 0.04 0.90 8.09 -2.39 -0.02 0.88 16 36 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.15 2.11 6.02 -2.91 -0.02 2.09 16 38 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.09 0.47 7.92 -2.39 -0.02 0.45 16 40 H 0.08 0.63 5.98 -2.38 -0.01 0.61 16 41 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.10 0.78 7.79 -2.38 -0.02 0.76 16 43 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -70.59 357.59 2.31 -68.28 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.28 Total: 15.63 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 7.17 Total: -26.73 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -7.19 Total: -110.69 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.05 Total: 53.52 kcal Total: -70.59 2.31 -68.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602507956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.041 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds