Wall clock time and date at job start Mon Mar 30 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46849 * 2 1 4 4 C 1.52992 * 109.47526 * 239.99747 * 2 1 3 5 5 C 1.50701 * 109.47164 * 64.99941 * 4 2 1 6 6 H 1.08008 * 119.99868 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00359 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99469 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47224 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47023 * 120.00583 * 9 7 5 12 12 H 1.48500 * 109.47007 * 240.00163 * 9 7 5 13 13 C 1.53001 * 109.46926 * 119.99712 * 2 1 3 14 14 N 1.46898 * 109.47190 * 295.00457 * 13 2 1 15 15 C 1.46905 * 111.00171 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.70841 * 324.45960 * 15 14 13 17 17 C 1.53332 * 109.70311 * 203.93030 * 15 14 13 18 18 C 1.53112 * 109.52705 * 190.31960 * 17 15 14 19 19 C 1.53360 * 109.50559 * 70.26206 * 18 17 15 20 20 C 1.50830 * 108.38568 * 310.07148 * 19 18 17 21 21 C 1.35747 * 124.11983 * 16.57013 * 20 19 18 22 22 C 1.39294 * 107.98764 * 180.11028 * 21 20 19 23 23 N 1.31070 * 108.08258 * 359.95160 * 22 21 20 24 24 N 1.34327 * 128.03389 * 196.61090 * 20 19 18 25 25 C 1.46498 * 126.09180 * 359.88920 * 24 20 19 26 26 H 1.08993 * 109.47595 * 299.99947 * 1 2 3 27 27 H 1.09004 * 109.47069 * 60.00374 * 1 2 3 28 28 H 1.09000 * 109.46849 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47592 * 185.00231 * 4 2 1 30 30 H 1.09004 * 109.47243 * 305.00393 * 4 2 1 31 31 H 0.97000 * 119.99373 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47106 * 175.00473 * 13 2 1 33 33 H 1.09005 * 109.47127 * 55.00280 * 13 2 1 34 34 H 1.00898 * 111.00381 * 56.04473 * 14 13 2 35 35 H 1.08998 * 109.45797 * 70.30439 * 17 15 14 36 36 H 1.08997 * 109.45948 * 310.33251 * 17 15 14 37 37 H 1.09002 * 109.46468 * 310.25130 * 18 17 15 38 38 H 1.08998 * 109.46064 * 190.26814 * 18 17 15 39 39 H 1.08995 * 109.68672 * 69.79882 * 19 18 17 40 40 H 1.09004 * 109.67874 * 190.31264 * 19 18 17 41 41 H 1.08004 * 125.95985 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47415 * 90.00174 * 25 24 20 43 43 H 1.08997 * 109.46728 * 210.00231 * 25 24 20 44 44 H 1.08998 * 109.46938 * 329.99773 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6415 0.0570 -2.4765 6 1 1.0807 0.9746 -2.3757 7 6 1.9935 -0.4018 -3.7282 8 7 2.6767 -1.5188 -3.8510 9 14 1.4999 0.5633 -5.2496 10 1 0.7423 1.7742 -4.8434 11 1 2.7183 0.9681 -5.9958 12 1 0.6462 -0.2856 -6.1189 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1246 -0.6271 3.6673 16 1 2.0732 -1.7085 3.5410 17 6 1.2535 -0.2044 4.8563 18 6 1.8967 -0.6873 6.1592 19 6 3.1705 0.1220 6.4321 20 6 4.0130 0.1192 5.1811 21 6 3.5479 -0.2157 3.9505 22 6 4.6027 -0.1058 3.0474 23 7 5.6657 0.2824 3.7087 24 7 5.3139 0.4308 5.0587 25 6 6.2063 0.8509 6.1419 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.1264 -0.7995 -1.2054 30 1 1.6055 -1.7198 -1.2951 31 1 2.9240 -1.8417 -4.7316 32 1 3.1263 -0.7994 1.2057 33 1 1.6054 -1.7198 1.2952 34 1 0.6527 0.1793 2.4753 35 1 0.2621 -0.6461 4.7552 36 1 1.1669 0.8819 4.8750 37 1 2.1498 -1.7438 6.0695 38 1 1.1959 -0.5503 6.9827 39 1 2.9056 1.1463 6.6940 40 1 3.7267 -0.3341 7.2510 41 1 4.5532 -0.3052 1.9871 42 1 6.6791 -0.0262 6.5840 43 1 6.9732 1.5152 5.7438 44 1 5.6305 1.3762 6.9039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:20 Heat of formation + Delta-G solvation = 56.119990 kcal Electronic energy + Delta-G solvation = -21722.699216 eV Core-core repulsion = 18675.640265 eV Total energy + Delta-G solvation = -3047.058951 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45119 -37.61150 -35.95179 -34.00522 -32.89270 -31.71546 -29.54047 -28.55702 -26.77601 -26.61293 -25.16054 -23.04482 -21.98164 -21.76650 -20.70430 -18.92082 -18.57127 -16.71166 -16.33762 -15.96469 -15.22523 -14.72060 -14.65041 -14.35548 -14.08985 -13.95756 -13.45236 -13.36851 -12.99085 -12.84490 -12.56790 -12.45400 -12.19767 -12.03162 -11.62411 -11.29499 -11.22061 -11.02417 -10.84716 -10.79107 -10.64901 -10.38915 -10.25836 -10.04906 -9.64845 -9.14332 -9.07972 -8.88102 -8.27962 -8.19531 -7.96941 -5.92547 -3.93218 1.93208 2.55054 2.98994 3.35865 3.43416 3.47596 4.35404 4.44458 4.45890 4.54352 4.67095 4.93903 4.96312 5.00056 5.15300 5.20061 5.28805 5.35247 5.43451 5.49368 5.57442 5.64017 5.71920 5.82226 5.85842 5.92043 6.08996 6.12757 6.15884 6.35034 6.37728 6.55221 6.65202 6.85242 7.03370 7.09654 7.17615 7.24675 7.49205 7.75359 7.77882 7.87929 7.93262 8.08363 8.52487 9.13455 9.69995 11.19028 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025946 B = 0.003631 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.901091 B = 7708.496560 C = 8459.072622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.681 5.681 15 C 0.163 3.837 16 H 0.047 0.953 17 C -0.122 4.122 18 C -0.109 4.109 19 C -0.052 4.052 20 C 0.075 3.925 21 C -0.211 4.211 22 C 0.072 3.928 23 N -0.306 5.306 24 N -0.376 5.376 25 C 0.104 3.896 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.258 0.742 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.339 0.661 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.185 0.815 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.180 2.116 24.363 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.065 4.065 14 N -0.313 5.313 15 C 0.052 3.948 16 H 0.065 0.935 17 C -0.160 4.160 18 C -0.147 4.147 19 C -0.091 4.091 20 C -0.054 4.054 21 C -0.223 4.223 22 C -0.113 4.113 23 N -0.127 5.127 24 N -0.158 5.158 25 C -0.038 4.038 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.158 0.842 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.202 0.798 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.144 2.783 24.227 24.480 hybrid contribution -1.474 -0.477 -0.935 1.810 sum 0.670 2.306 23.292 23.415 Atomic orbital electron populations 1.21733 0.96752 1.00352 1.00220 1.21223 0.94828 1.00115 0.94168 0.91660 1.19115 0.96145 0.95348 0.90406 1.21286 1.34425 1.08205 0.90993 0.92543 1.25019 0.95387 0.95098 0.99073 1.69978 1.39207 1.21280 1.23195 0.86592 0.78238 0.80141 0.83371 1.19762 1.21112 1.21178 1.22268 1.00382 0.94330 0.89567 1.60529 1.19157 1.50671 1.00963 1.19789 0.89577 0.95501 0.89888 0.93517 1.21778 0.98241 1.02247 0.93719 1.21492 0.95539 0.99924 0.97780 1.20289 0.94830 1.01529 0.92444 1.20784 0.85497 1.01699 0.97398 1.19778 0.96968 1.14069 0.91515 1.23795 0.89702 0.97408 1.00361 1.77574 1.23543 1.24946 0.86650 1.48157 1.07272 1.53145 1.07187 1.21744 0.94054 1.00831 0.87156 0.94952 0.91965 0.94075 0.96657 0.96772 0.93208 0.91381 0.95839 0.84160 0.91558 0.90734 0.91392 0.90907 0.90039 0.90689 0.79791 0.91149 0.89428 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.77 37.16 0.33 -2.16 16 2 C -0.08 -1.74 2.54 -90.62 -0.23 -1.97 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.06 1.10 4.86 -3.82 -0.02 1.08 16 14 N -0.68 -10.14 6.25 -107.69 -0.67 -10.81 16 15 C 0.16 2.13 2.85 -68.62 -0.20 1.94 16 16 H 0.05 0.64 7.82 -51.93 -0.41 0.23 16 17 C -0.12 -1.20 5.19 -26.50 -0.14 -1.33 16 18 C -0.11 -0.85 5.90 -26.49 -0.16 -1.01 16 19 C -0.05 -0.43 5.83 -27.63 -0.16 -0.59 16 20 C 0.07 0.93 6.73 -82.33 -0.55 0.37 16 21 C -0.21 -3.05 5.60 -105.05 -0.59 -3.64 16 22 C 0.07 1.18 11.25 -17.48 -0.20 0.98 16 23 N -0.31 -5.02 12.59 30.54 0.38 -4.64 16 24 N -0.38 -4.89 4.00 -63.88 -0.26 -5.14 16 25 C 0.10 0.83 11.32 59.85 0.68 1.51 16 26 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 27 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.07 1.23 5.28 -51.93 -0.27 0.96 16 33 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 34 H 0.34 4.65 6.64 -39.29 -0.26 4.39 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 37 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.19 3.07 5.85 -52.48 -0.31 2.76 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.44 7.90 -51.93 -0.41 0.03 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -33.00 344.32 -8.75 -41.74 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.36 Total: 0.71 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -1.75 Total: -17.48 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.19 Total: -47.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.00 -8.75 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.864 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds